RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 KRTAP3-2Q9BYR7 98 aa9.08□□□□□ -0.96
VPS50-218ENST00000485994 ZBTB3Q9H5J0 574 aa9.08□□□□□ -0.96
VPS50-218ENST00000485994 NFKBIEO00221 500 aa9.07□□□□□ -0.96
VPS50-218ENST00000485994 KIF3CO14782 793 aa9.07□□□□□ -0.96
VPS50-218ENST00000485994 C21orf2O43822 256 aa9.07□□□□□ -0.96
VPS50-218ENST00000485994 NTSR2O95665 410 aa9.07□□□□□ -0.96
VPS50-218ENST00000485994 CCDC24Q8N4L8 307 aa9.07□□□□□ -0.96
VPS50-218ENST00000485994 PDCD7Q8N8D1 485 aaKnown RBP9.07□□□□□ -0.96
VPS50-218ENST00000485994 CRAMP1Q96RY5 1269 aa9.07□□□□□ -0.96
VPS50-218ENST00000485994 UTP14AQ9BVJ6 771 aaKnown RBP9.07□□□□□ -0.96
VPS50-218ENST00000485994 CHPF2Q9P2E5 772 aa9.07□□□□□ -0.96
VPS50-218ENST00000485994 ARFGEF2Q9Y6D5 1785 aa9.07□□□□□ -0.96
VPS50-218ENST00000485994 GLTPD2A6NH11 291 aa9.06□□□□□ -0.96
VPS50-218ENST00000485994 ANXA1P04083 346 aa9.06□□□□□ -0.96
VPS50-218ENST00000485994 PRELPP51888 382 aa9.06□□□□□ -0.96
VPS50-218ENST00000485994 AIMP1Q12904 312 aaKnown RBP9.06□□□□□ -0.96
VPS50-218ENST00000485994 ERFEQ4G0M1 354 aa9.06□□□□□ -0.96
VPS50-218ENST00000485994 CCDC30Q5VVM6 783 aa9.06□□□□□ -0.96
VPS50-218ENST00000485994 PRPF40BQ6NWY9 871 aaKnown RBP9.06□□□□□ -0.96
VPS50-218ENST00000485994 NLRP10Q86W26 655 aa9.06□□□□□ -0.96
VPS50-218ENST00000485994 RTKN2Q8IZC4 609 aa9.06□□□□□ -0.96
VPS50-218ENST00000485994 C8orf58Q8NAV2 365 aa9.06□□□□□ -0.96
VPS50-218ENST00000485994 NLRP3Q96P20 1036 aa9.06□□□□□ -0.96
VPS50-218ENST00000485994 ISCA1Q9BUE6 129 aa9.06□□□□□ -0.96
VPS50-218ENST00000485994 RNF181Q9P0P0 153 aa9.06□□□□□ -0.96
VPS50-218ENST00000485994 KDM2BQ8NHM5 1336 aa9.05□□□□□ -0.96
VPS50-218ENST00000485994 GPTP24298 496 aa9.05□□□□□ -0.96
VPS50-218ENST00000485994 EMP3P54852 163 aa9.05□□□□□ -0.96
VPS50-218ENST00000485994 NUTM1Q86Y26 1132 aa9.05□□□□□ -0.96
VPS50-218ENST00000485994 NECTIN2Q92692 538 aa9.05□□□□□ -0.96
VPS50-218ENST00000485994 PSMD1Q99460 953 aa9.05□□□□□ -0.96
VPS50-218ENST00000485994 VPS33BQ9H267 617 aa9.05□□□□□ -0.96
VPS50-218ENST00000485994 COL11A2P13942 1736 aaPredicted RBP9.05□□□□□ -0.96
VPS50-218ENST00000485994 FAM177BA6PVY3 158 aa9.04□□□□□ -0.96
VPS50-218ENST00000485994 BBOX1O75936 387 aa9.04□□□□□ -0.96
VPS50-218ENST00000485994 TOMM70O94826 608 aa9.04□□□□□ -0.96
VPS50-218ENST00000485994 FKBP4Q02790 459 aaKnown RBP eCLIP9.04□□□□□ -0.96
VPS50-218ENST00000485994 RASSF7Q02833 373 aa9.04□□□□□ -0.96
VPS50-218ENST00000485994 CCDC93Q567U6 631 aa9.04□□□□□ -0.96
VPS50-218ENST00000485994 DPY19L2Q6NUT2 758 aa9.04□□□□□ -0.96
VPS50-218ENST00000485994 RBM17Q96I25 401 aaKnown RBP9.04□□□□□ -0.96
VPS50-218ENST00000485994 TAOK3Q9H2K8 898 aa9.04□□□□□ -0.96
VPS50-218ENST00000485994 SH3TC1Q8TE82 1336 aa9.04□□□□□ -0.96
VPS50-218ENST00000485994 FAM205CA6NFA0 338 aa9.03□□□□□ -0.96
VPS50-218ENST00000485994 ELL2O00472 640 aaPredicted RBP9.03□□□□□ -0.96
VPS50-218ENST00000485994 HSP90B1P14625 803 aaKnown RBP9.03□□□□□ -0.96
VPS50-218ENST00000485994 SF3B3Q15393 1217 aaKnown RBP9.03□□□□□ -0.96
VPS50-218ENST00000485994 TSPYL6Q8N831 410 aa9.03□□□□□ -0.96
VPS50-218ENST00000485994 CCDC191Q8NCU4 936 aa9.03□□□□□ -0.96
VPS50-218ENST00000485994 RPGRQ92834 1020 aaKnown RBP9.03□□□□□ -0.96
VPS50-218ENST00000485994 HS3ST6Q96QI5 342 aa9.03□□□□□ -0.96
VPS50-218ENST00000485994 PHAXQ9H814 394 aaKnown RBP9.03□□□□□ -0.96
VPS50-218ENST00000485994 ZBTB47Q9UFB7 747 aaPredicted RBP9.03□□□□□ -0.96
VPS50-218ENST00000485994 TRMT112Q9UI30 125 aaKnown RBP9.03□□□□□ -0.96
VPS50-218ENST00000485994 ANKRD36CQ5JPF3 1778 aa9.03□□□□□ -0.96
VPS50-218ENST00000485994 ABCC12Q96J65 1359 aa9.02□□□□□ -0.97
VPS50-218ENST00000485994 SNPHO15079 494 aa9.02□□□□□ -0.97
VPS50-218ENST00000485994 VAMP4O75379 141 aa9.02□□□□□ -0.97
VPS50-218ENST00000485994 DDX58O95786 925 aaKnown RBP9.02□□□□□ -0.97
VPS50-218ENST00000485994 VEGFAP15692 232 aaPredicted RBP9.02□□□□□ -0.97
VPS50-218ENST00000485994 GOLGA2Q08379 1002 aa9.02□□□□□ -0.97
VPS50-218ENST00000485994 TWISTNBQ3B726 338 aaPredicted RBP9.02□□□□□ -0.97
VPS50-218ENST00000485994 KSR2Q6VAB6 950 aa9.02□□□□□ -0.97
VPS50-218ENST00000485994 TMC4Q7Z404 712 aa9.02□□□□□ -0.97
VPS50-218ENST00000485994 RIC3Q7Z5B4 369 aa9.02□□□□□ -0.97
VPS50-218ENST00000485994 SP8Q8IXZ3 490 aa9.02□□□□□ -0.97
VPS50-218ENST00000485994 RBM46Q8TBY0 533 aaKnown RBP9.02□□□□□ -0.97
VPS50-218ENST00000485994 ZNF526Q8TF50 670 aaPredicted RBP9.02□□□□□ -0.97
VPS50-218ENST00000485994 METTL22Q9BUU2 404 aaPredicted RBP9.02□□□□□ -0.97
VPS50-218ENST00000485994 SNED1Q8TER0 1413 aa9.02□□□□□ -0.97
VPS50-218ENST00000485994 CACNA1SQ13698 1873 aa9.02□□□□□ -0.97
VPS50-218ENST00000485994 POTECB2RU33 542 aa9.01□□□□□ -0.97
VPS50-218ENST00000485994 CCER2I3L3R5 266 aa9.01□□□□□ -0.97
VPS50-218ENST00000485994 FZD9O00144 591 aa9.01□□□□□ -0.97
VPS50-218ENST00000485994 FSTL1Q12841 308 aa9.01□□□□□ -0.97
VPS50-218ENST00000485994 FAM9BQ8IZU0 186 aa9.01□□□□□ -0.97
VPS50-218ENST00000485994 SYNE4Q8N205 404 aa9.01□□□□□ -0.97
VPS50-218ENST00000485994 ZBTB38Q8NAP3 1195 aaPredicted RBP9.01□□□□□ -0.97
VPS50-218ENST00000485994 RTFDC1Q9BY42 306 aaPredicted RBP9.01□□□□□ -0.97
VPS50-218ENST00000485994 RRAGCQ9HB90 399 aa9.01□□□□□ -0.97
VPS50-218ENST00000485994 NMRK2Q9NPI5 230 aa9.01□□□□□ -0.97
VPS50-218ENST00000485994 ATP6V0A2Q9Y487 856 aa9.01□□□□□ -0.97
VPS50-218ENST00000485994 ZNF521Q96K83 1311 aa9.01□□□□□ -0.97
VPS50-218ENST00000485994 PCCAP05165 728 aaPredicted RBP9□□□□□ -0.97
VPS50-218ENST00000485994 HSPA6P17066 643 aa9□□□□□ -0.97
VPS50-218ENST00000485994 C3orf67Q6ZVT6 689 aa9□□□□□ -0.97
VPS50-218ENST00000485994 DDX46Q7L014 1031 aaKnown RBP9□□□□□ -0.97
VPS50-218ENST00000485994 TSR2Q969E8 191 aaKnown RBP9□□□□□ -0.97
VPS50-218ENST00000485994 FAM89AQ96GI7 184 aa9□□□□□ -0.97
VPS50-218ENST00000485994 L3MBTL3Q96JM7 780 aaPredicted RBP9□□□□□ -0.97
VPS50-218ENST00000485994 STK31Q9BXU1 1019 aa9□□□□□ -0.97
VPS50-218ENST00000485994 TMX4Q9H1E5 349 aaPredicted RBP9□□□□□ -0.97
VPS50-218ENST00000485994 MYH16Q9H6N6 1097 aa9□□□□□ -0.97
VPS50-218ENST00000485994 PI4KAP2A4QPH2 592 aa8.99□□□□□ -0.97
VPS50-218ENST00000485994 ATP5J2-PTCD1G3V325 749 aa8.99□□□□□ -0.97
VPS50-218ENST00000485994 HCLS1P14317 486 aaPredicted RBP8.99□□□□□ -0.97
VPS50-218ENST00000485994 IARSP41252 1262 aaKnown RBP8.99□□□□□ -0.97
VPS50-218ENST00000485994 GRAPQ13588 217 aa8.99□□□□□ -0.97
VPS50-218ENST00000485994 PI4KAP1Q8N8J0 262 aa8.99□□□□□ -0.97
VPS50-218ENST00000485994 SUPT20HQ8NEM7 779 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms