RNA–Protein interactions for RNA: ENST00000485746.1

PTCD1-205, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 3

Gene PTCD1, Length 721 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-205ENST00000485746 NMRK2Q9NPI5 230 aa15.9■□□□□ 0.14
PTCD1-205ENST00000485746 ANKRD36CQ5JPF3 1778 aa15.9■□□□□ 0.14
PTCD1-205ENST00000485746 UTRNP46939 3433 aa15.9■□□□□ 0.14
PTCD1-205ENST00000485746 C1QTNF8P60827 252 aa15.89■□□□□ 0.13
PTCD1-205ENST00000485746 GCKRQ14397 625 aa15.89■□□□□ 0.13
PTCD1-205ENST00000485746 DPP8Q6V1X1 898 aaPredicted RBP15.89■□□□□ 0.13
PTCD1-205ENST00000485746 UBE3BQ7Z3V4 1068 aa15.89■□□□□ 0.13
PTCD1-205ENST00000485746 LARGE2Q8N3Y3 721 aa15.89■□□□□ 0.13
PTCD1-205ENST00000485746 MPNDQ8N594 471 aa15.89■□□□□ 0.13
PTCD1-205ENST00000485746 CDHR2Q9BYE9 1310 aa15.89■□□□□ 0.13
PTCD1-205ENST00000485746 ARFGEF2Q9Y6D5 1785 aa15.88■□□□□ 0.13
PTCD1-205ENST00000485746 RPS8P62241 208 aaKnown RBP15.88■□□□□ 0.13
PTCD1-205ENST00000485746 MRPL50Q8N5N7 158 aaKnown RBP15.88■□□□□ 0.13
PTCD1-205ENST00000485746 CELF1Q92879 486 aaKnown RBP15.88■□□□□ 0.13
PTCD1-205ENST00000485746 BCL2L13Q9BXK5 485 aa15.88■□□□□ 0.13
PTCD1-205ENST00000485746 SMC4Q9NTJ3 1288 aa15.88■□□□□ 0.13
PTCD1-205ENST00000485746 H7C1W4 665 aa15.87■□□□□ 0.13
PTCD1-205ENST00000485746 PPIP5K2O43314 1243 aa15.87■□□□□ 0.13
PTCD1-205ENST00000485746 CT47B1P0C2W7 299 aaPredicted RBP15.87■□□□□ 0.13
PTCD1-205ENST00000485746 CTSWP56202 376 aa15.87■□□□□ 0.13
PTCD1-205ENST00000485746 SSH1Q8WYL5 1049 aa15.87■□□□□ 0.13
PTCD1-205ENST00000485746 SEC31BQ9NQW1 1179 aa15.87■□□□□ 0.13
PTCD1-205ENST00000485746 C9orf78Q9NZ63 289 aaPredicted RBP15.87■□□□□ 0.13
PTCD1-205ENST00000485746 KIF3CO14782 793 aa15.86■□□□□ 0.13
PTCD1-205ENST00000485746 EIF6P56537 245 aaKnown RBP15.86■□□□□ 0.13
PTCD1-205ENST00000485746 ALDH1L2Q3SY69 923 aa15.86■□□□□ 0.13
PTCD1-205ENST00000485746 BEND3Q5T5X7 828 aa15.86■□□□□ 0.13
PTCD1-205ENST00000485746 SLC51AQ86UW1 340 aa15.86■□□□□ 0.13
PTCD1-205ENST00000485746 ANKRD18AQ8IVF6 992 aa15.86■□□□□ 0.13
PTCD1-205ENST00000485746 NIM1KQ8IY84 436 aa15.86■□□□□ 0.13
PTCD1-205ENST00000485746 TRMT2AQ8IZ69 625 aaKnown RBP15.86■□□□□ 0.13
PTCD1-205ENST00000485746 CDC5LQ99459 802 aaKnown RBP15.86■□□□□ 0.13
PTCD1-205ENST00000485746 SRCIN1Q9C0H9 1055 aa15.86■□□□□ 0.13
PTCD1-205ENST00000485746 NSFL1CQ9UNZ2 370 aaKnown RBP15.86■□□□□ 0.13
PTCD1-205ENST00000485746 CACNA1SQ13698 1873 aa15.86■□□□□ 0.13
PTCD1-205ENST00000485746 C6orf229H3BNL8 230 aa15.85■□□□□ 0.13
PTCD1-205ENST00000485746 DDNO94850 711 aaPredicted RBP15.85■□□□□ 0.13
PTCD1-205ENST00000485746 VEGFAP15692 232 aaPredicted RBP15.85■□□□□ 0.13
PTCD1-205ENST00000485746 AOC3Q16853 763 aa15.85■□□□□ 0.13
PTCD1-205ENST00000485746 ALDH1L1O75891 902 aa15.84■□□□□ 0.13
PTCD1-205ENST00000485746 TTLL11Q8NHH1 800 aa15.84■□□□□ 0.13
PTCD1-205ENST00000485746 VPS33BQ9H267 617 aa15.84■□□□□ 0.13
PTCD1-205ENST00000485746 ANKIB1Q9P2G1 1089 aa15.84■□□□□ 0.13
PTCD1-205ENST00000485746 CHMP3Q9Y3E7 222 aa15.84■□□□□ 0.13
PTCD1-205ENST00000485746 PTPRCP08575 1304 aa15.84■□□□□ 0.13
PTCD1-205ENST00000485746 TOMM70O94826 608 aa15.83■□□□□ 0.12
PTCD1-205ENST00000485746 GREM2Q9H772 168 aa15.83■□□□□ 0.12
PTCD1-205ENST00000485746 GJA3Q9Y6H8 435 aa15.83■□□□□ 0.12
PTCD1-205ENST00000485746 G3V3G9 751 aa15.82■□□□□ 0.12
PTCD1-205ENST00000485746 GRM8O00222 908 aa15.82■□□□□ 0.12
PTCD1-205ENST00000485746 IGHMBP2P38935 993 aaKnown RBP15.82■□□□□ 0.12
PTCD1-205ENST00000485746 GPSM2P81274 684 aa15.82■□□□□ 0.12
PTCD1-205ENST00000485746 DCAF8Q5TAQ9 597 aa15.82■□□□□ 0.12
PTCD1-205ENST00000485746 EYA3Q99504 573 aa15.82■□□□□ 0.12
PTCD1-205ENST00000485746 PLA2G12BQ9BX93 195 aa15.82■□□□□ 0.12
PTCD1-205ENST00000485746 RTFDC1Q9BY42 306 aaPredicted RBP15.82■□□□□ 0.12
PTCD1-205ENST00000485746 FER1L6Q2WGJ9 1857 aa15.82■□□□□ 0.12
PTCD1-205ENST00000485746 FZD9O00144 591 aa15.81■□□□□ 0.12
PTCD1-205ENST00000485746 RIMBP2O15034 1052 aa15.81■□□□□ 0.12
PTCD1-205ENST00000485746 SBF1O95248 1867 aa15.81■□□□□ 0.12
PTCD1-205ENST00000485746 WASHC4Q2M389 1173 aa15.81■□□□□ 0.12
PTCD1-205ENST00000485746 NOB1Q9ULX3 412 aaKnown RBP15.81■□□□□ 0.12
PTCD1-205ENST00000485746 ZNF541Q9H0D2 1346 aa15.8■□□□□ 0.12
PTCD1-205ENST00000485746 ANKRD18BA2A2Z9 1011 aa15.8■□□□□ 0.12
PTCD1-205ENST00000485746 IQCA1LA6NCM1 817 aa15.8■□□□□ 0.12
PTCD1-205ENST00000485746 ITGA6P23229 1130 aa15.8■□□□□ 0.12
PTCD1-205ENST00000485746 CASP7P55210 303 aa15.8■□□□□ 0.12
PTCD1-205ENST00000485746 MPHOSPH8Q99549 860 aa15.8■□□□□ 0.12
PTCD1-205ENST00000485746 GGA1Q9UJY5 639 aa15.8■□□□□ 0.12
PTCD1-205ENST00000485746 UFL1O94874 794 aa15.79■□□□□ 0.12
PTCD1-205ENST00000485746 RARSP54136 660 aaKnown RBP15.79■□□□□ 0.12
PTCD1-205ENST00000485746 KIAA2012Q0VF49 1180 aa15.79■□□□□ 0.12
PTCD1-205ENST00000485746 FAM161AQ3B820 660 aa15.79■□□□□ 0.12
PTCD1-205ENST00000485746 TAF7LQ5H9L4 462 aa15.79■□□□□ 0.12
PTCD1-205ENST00000485746 RBM46Q8TBY0 533 aaKnown RBP15.79■□□□□ 0.12
PTCD1-205ENST00000485746 ZC3H12CQ9C0D7 883 aaKnown RBP15.79■□□□□ 0.12
PTCD1-205ENST00000485746 BSDC1Q9NW68 430 aaPredicted RBP15.79■□□□□ 0.12
PTCD1-205ENST00000485746 ZNRF3Q9ULT6 936 aa15.79■□□□□ 0.12
PTCD1-205ENST00000485746 DDX60Q8IY21 1712 aaKnown RBP15.79■□□□□ 0.12
PTCD1-205ENST00000485746 SNED1Q8TER0 1413 aa15.78■□□□□ 0.12
PTCD1-205ENST00000485746 CSF1RP07333 972 aa15.78■□□□□ 0.12
PTCD1-205ENST00000485746 LMOD1P29536 600 aaPredicted RBP15.78■□□□□ 0.12
PTCD1-205ENST00000485746 IFIT5Q13325 482 aaKnown RBP15.78■□□□□ 0.12
PTCD1-205ENST00000485746 LMBR1LQ6UX01 489 aa15.78■□□□□ 0.12
PTCD1-205ENST00000485746 GPC2Q8N158 579 aa15.78■□□□□ 0.12
PTCD1-205ENST00000485746 API5Q9BZZ5 524 aaKnown RBP15.78■□□□□ 0.12
PTCD1-205ENST00000485746 POLLQ9UGP5 575 aa15.78■□□□□ 0.12
PTCD1-205ENST00000485746 HACL1Q9UJ83 578 aa15.78■□□□□ 0.12
PTCD1-205ENST00000485746 LAMB2P55268 1798 aa15.77■□□□□ 0.12
PTCD1-205ENST00000485746 ATP2B4P23634 1241 aa15.77■□□□□ 0.12
PTCD1-205ENST00000485746 CCDC57Q2TAC2 916 aa15.77■□□□□ 0.12
PTCD1-205ENST00000485746 SMC1BQ8NDV3 1235 aa15.77■□□□□ 0.12
PTCD1-205ENST00000485746 TBC1D16Q8TBP0 767 aa15.77■□□□□ 0.12
PTCD1-205ENST00000485746 PODXL2Q9NZ53 605 aa15.77■□□□□ 0.12
PTCD1-205ENST00000485746 RTL9Q8NET4 1388 aa15.76■□□□□ 0.11
PTCD1-205ENST00000485746 CCDC88AQ3V6T2 1871 aa15.76■□□□□ 0.11
PTCD1-205ENST00000485746 XDHP47989 1333 aa15.76■□□□□ 0.11
PTCD1-205ENST00000485746 POTECB2RU33 542 aa15.76■□□□□ 0.11
PTCD1-205ENST00000485746 IPO8O15397 1037 aaKnown RBP15.76■□□□□ 0.11
PTCD1-205ENST00000485746 RAD17O75943 681 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms