RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 SF3B3Q15393 1217 aaKnown RBP21.26■□□□□ 0.99
TRIM54-203ENST00000485306 RTL5Q5HYW3 569 aaPredicted RBP21.26■□□□□ 0.99
TRIM54-203ENST00000485306 KSR2Q6VAB6 950 aa21.26■□□□□ 0.99
TRIM54-203ENST00000485306 L3MBTL3Q96JM7 780 aaPredicted RBP21.26■□□□□ 0.99
TRIM54-203ENST00000485306 METTL22Q9BUU2 404 aaPredicted RBP21.26■□□□□ 0.99
TRIM54-203ENST00000485306 SLC4A2P04920 1241 aa21.25■□□□□ 0.99
TRIM54-203ENST00000485306 DPP8Q6V1X1 898 aaPredicted RBP21.25■□□□□ 0.99
TRIM54-203ENST00000485306 MPNDQ8N594 471 aa21.25■□□□□ 0.99
TRIM54-203ENST00000485306 CWC25Q9NXE8 425 aaPredicted RBP21.25■□□□□ 0.99
TRIM54-203ENST00000485306 DDX60Q8IY21 1712 aaKnown RBP21.24■□□□□ 0.99
TRIM54-203ENST00000485306 EXOSC9Q06265 439 aaKnown RBP21.24■□□□□ 0.99
TRIM54-203ENST00000485306 NEXNQ0ZGT2 675 aa21.24■□□□□ 0.99
TRIM54-203ENST00000485306 GPC2Q8N158 579 aa21.24■□□□□ 0.99
TRIM54-203ENST00000485306 MYH16Q9H6N6 1097 aa21.24■□□□□ 0.99
TRIM54-203ENST00000485306 MAP3K2Q9Y2U5 619 aa21.24■□□□□ 0.99
TRIM54-203ENST00000485306 SCN4AP35499 1836 aa21.24■□□□□ 0.99
TRIM54-203ENST00000485306 ZNF541Q9H0D2 1346 aa21.24■□□□□ 0.99
TRIM54-203ENST00000485306 PI4KAP2A4QPH2 592 aa21.23■□□□□ 0.99
TRIM54-203ENST00000485306 PPIP5K2O43314 1243 aa21.23■□□□□ 0.99
TRIM54-203ENST00000485306 PCCAP05165 728 aaPredicted RBP21.23■□□□□ 0.99
TRIM54-203ENST00000485306 NIM1KQ8IY84 436 aa21.23■□□□□ 0.99
TRIM54-203ENST00000485306 PI4KAP1Q8N8J0 262 aa21.23■□□□□ 0.99
TRIM54-203ENST00000485306 YTHDC1Q96MU7 727 aaKnown RBP21.23■□□□□ 0.99
TRIM54-203ENST00000485306 RTFDC1Q9BY42 306 aaPredicted RBP21.22■□□□□ 0.99
TRIM54-203ENST00000485306 HACL1Q9UJ83 578 aa21.22■□□□□ 0.99
TRIM54-203ENST00000485306 CEP350Q5VT06 3117 aa21.21■□□□□ 0.99
TRIM54-203ENST00000485306 VAMP4O75379 141 aa21.21■□□□□ 0.99
TRIM54-203ENST00000485306 CHADLQ6NUI6 762 aa21.21■□□□□ 0.99
TRIM54-203ENST00000485306 TAF1P21675 1872 aa21.2■□□□□ 0.98
TRIM54-203ENST00000485306 CACNA1FO60840 1977 aa21.2■□□□□ 0.98
TRIM54-203ENST00000485306 PDE8AO60658 829 aa21.2■□□□□ 0.98
TRIM54-203ENST00000485306 AOC3Q16853 763 aa21.2■□□□□ 0.98
TRIM54-203ENST00000485306 TAF1DQ9H5J8 278 aaPredicted RBP21.2■□□□□ 0.98
TRIM54-203ENST00000485306 GJA3Q9Y6H8 435 aa21.2■□□□□ 0.98
TRIM54-203ENST00000485306 E9PSI1 815 aa21.19■□□□□ 0.98
TRIM54-203ENST00000485306 RPS8P62241 208 aaKnown RBP21.19■□□□□ 0.98
TRIM54-203ENST00000485306 CCDC152Q4G0S7 254 aa21.19■□□□□ 0.98
TRIM54-203ENST00000485306 SLC51AQ86UW1 340 aa21.19■□□□□ 0.98
TRIM54-203ENST00000485306 PNMA8AQ86V59 439 aaPredicted RBP21.19■□□□□ 0.98
TRIM54-203ENST00000485306 CELF1Q92879 486 aaKnown RBP21.19■□□□□ 0.98
TRIM54-203ENST00000485306 LMOD1P29536 600 aaPredicted RBP21.18■□□□□ 0.98
TRIM54-203ENST00000485306 EPHX2P34913 555 aa21.18■□□□□ 0.98
TRIM54-203ENST00000485306 G2E3Q7L622 706 aa21.18■□□□□ 0.98
TRIM54-203ENST00000485306 LDHDQ86WU2 507 aa21.18■□□□□ 0.98
TRIM54-203ENST00000485306 DNAJC5GQ8N7S2 189 aa21.18■□□□□ 0.98
TRIM54-203ENST00000485306 ZNRF3Q9ULT6 936 aa21.18■□□□□ 0.98
TRIM54-203ENST00000485306 KIAA2012Q0VF49 1180 aa21.17■□□□□ 0.98
TRIM54-203ENST00000485306 FLIIQ13045 1269 aa21.17■□□□□ 0.98
TRIM54-203ENST00000485306 EAPPQ56P03 285 aaPredicted RBP21.17■□□□□ 0.98
TRIM54-203ENST00000485306 NSFL1CQ9UNZ2 370 aaKnown RBP21.17■□□□□ 0.98
TRIM54-203ENST00000485306 CLEC11AQ9Y240 323 aa21.17■□□□□ 0.98
TRIM54-203ENST00000485306 CDHR2Q9BYE9 1310 aa21.16■□□□□ 0.98
TRIM54-203ENST00000485306 IGKV5-2P06315 115 aa21.16■□□□□ 0.98
TRIM54-203ENST00000485306 FKBP5Q13451 457 aaPredicted RBP21.16■□□□□ 0.98
TRIM54-203ENST00000485306 JARID2Q92833 1246 aaPredicted RBP21.16■□□□□ 0.98
TRIM54-203ENST00000485306 COL4A5P29400 1685 aa21.15■□□□□ 0.98
TRIM54-203ENST00000485306 POTEIP0CG38 1075 aa21.15■□□□□ 0.98
TRIM54-203ENST00000485306 POTEJP0CG39 1038 aa21.15■□□□□ 0.98
TRIM54-203ENST00000485306 NEURL1BA8MQ27 555 aa21.14■□□□□ 0.97
TRIM54-203ENST00000485306 HTRA3P83110 453 aa21.14■□□□□ 0.97
TRIM54-203ENST00000485306 SLFN5Q08AF3 891 aa21.14■□□□□ 0.97
TRIM54-203ENST00000485306 WASHC4Q2M389 1173 aa21.14■□□□□ 0.97
TRIM54-203ENST00000485306 DNAAF4Q8WXU2 420 aa21.14■□□□□ 0.97
TRIM54-203ENST00000485306 SEC31BQ9NQW1 1179 aa21.14■□□□□ 0.97
TRIM54-203ENST00000485306 C6orf229H3BNL8 230 aa21.13■□□□□ 0.97
TRIM54-203ENST00000485306 TNIP1Q15025 636 aa21.13■□□□□ 0.97
TRIM54-203ENST00000485306 CWF19L2Q2TBE0 894 aaKnown RBP21.13■□□□□ 0.97
TRIM54-203ENST00000485306 KLRG1Q96E93 195 aa21.13■□□□□ 0.97
TRIM54-203ENST00000485306 EYA3Q99504 573 aa21.13■□□□□ 0.97
TRIM54-203ENST00000485306 LRRC37AA6NMS7 1700 aa21.12■□□□□ 0.97
TRIM54-203ENST00000485306 GPSM2P81274 684 aa21.12■□□□□ 0.97
TRIM54-203ENST00000485306 CXCL9Q07325 125 aa21.12■□□□□ 0.97
TRIM54-203ENST00000485306 CIAPIN1Q6FI81 312 aa21.11■□□□□ 0.97
TRIM54-203ENST00000485306 ANKRD18AQ8IVF6 992 aa21.11■□□□□ 0.97
TRIM54-203ENST00000485306 TRMT2AQ8IZ69 625 aaKnown RBP21.11■□□□□ 0.97
TRIM54-203ENST00000485306 LINS1Q8NG48 757 aa21.11■□□□□ 0.97
TRIM54-203ENST00000485306 CCDC85AQ96PX6 553 aaPredicted RBP21.11■□□□□ 0.97
TRIM54-203ENST00000485306 CDC5LQ99459 802 aaKnown RBP21.11■□□□□ 0.97
TRIM54-203ENST00000485306 ANKIB1Q9P2G1 1089 aa21.11■□□□□ 0.97
TRIM54-203ENST00000485306 H7C1W4 665 aa21.1■□□□□ 0.97
TRIM54-203ENST00000485306 CTSWP56202 376 aa21.1■□□□□ 0.97
TRIM54-203ENST00000485306 GCKRQ14397 625 aa21.1■□□□□ 0.97
TRIM54-203ENST00000485306 RIMBP2O15034 1052 aa21.09■□□□□ 0.97
TRIM54-203ENST00000485306 EPS15P42566 896 aa21.09■□□□□ 0.97
TRIM54-203ENST00000485306 SCNN1DP51172 638 aa21.09■□□□□ 0.97
TRIM54-203ENST00000485306 USP50Q70EL3 339 aaPredicted RBP21.09■□□□□ 0.97
TRIM54-203ENST00000485306 UBE3BQ7Z3V4 1068 aa21.09■□□□□ 0.97
TRIM54-203ENST00000485306 CDCA7LQ96GN5 454 aa21.09■□□□□ 0.97
TRIM54-203ENST00000485306 BCL2L13Q9BXK5 485 aa21.09■□□□□ 0.97
TRIM54-203ENST00000485306 PODXL2Q9NZ53 605 aa21.09■□□□□ 0.97
TRIM54-203ENST00000485306 POLLQ9UGP5 575 aa21.09■□□□□ 0.97
TRIM54-203ENST00000485306 MYH3P11055 1940 aa21.08■□□□□ 0.97
TRIM54-203ENST00000485306 G3V3G9 751 aa21.08■□□□□ 0.97
TRIM54-203ENST00000485306 RAD17O75943 681 aa21.08■□□□□ 0.97
TRIM54-203ENST00000485306 DCAF8Q5TAQ9 597 aa21.08■□□□□ 0.97
TRIM54-203ENST00000485306 TTLL11Q8NHH1 800 aa21.08■□□□□ 0.97
TRIM54-203ENST00000485306 TBC1D16Q8TBP0 767 aa21.08■□□□□ 0.97
TRIM54-203ENST00000485306 ZC3H12CQ9C0D7 883 aaKnown RBP21.08■□□□□ 0.97
TRIM54-203ENST00000485306 CREBZFQ9NS37 354 aa21.08■□□□□ 0.97
TRIM54-203ENST00000485306 GPRC5DQ9NZD1 345 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms