RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 CHD1LQ86WJ1 897 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 TTC5Q8N0Z6 440 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 HHIPL1Q96JK4 782 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 SNX27Q96L92 541 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 FMNL2Q96PY5 1086 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 ZIC5Q96T25 663 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 TRAF5O00463 557 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 EIF5BO60841 1220 aaKnown RBP6.74□□□□□ -1.33
COL17A1-206ENST00000483876 TRPA1O75762 1119 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 EIF2S2P20042 333 aaKnown RBP6.74□□□□□ -1.33
COL17A1-206ENST00000483876 ATP6V1AP38606 617 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 ATP8B2P98198 1209 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 ITPK1Q13572 414 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 PDIA6Q15084 440 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 BEND3Q5T5X7 828 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 CEP85Q6P2H3 762 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 VSIG10Q8N0Z9 540 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 DNAAF4Q8WXU2 420 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 TEX13AQ9BXU3 409 aaPredicted RBP6.74□□□□□ -1.33
COL17A1-206ENST00000483876 SRCIN1Q9C0H9 1055 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 USP44Q9H0E7 712 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 PHAXQ9H814 394 aaKnown RBP6.74□□□□□ -1.33
COL17A1-206ENST00000483876 CHPF2Q9P2E5 772 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 RBM27Q9P2N5 1060 aaKnown RBP6.74□□□□□ -1.33
COL17A1-206ENST00000483876 RAPGEFL1Q9UHV5 662 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 HDAC9Q9UKV0 1011 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 SIPA1L3O60292 1781 aaPredicted RBP6.74□□□□□ -1.33
COL17A1-206ENST00000483876 ADAMTSL1Q8N6G6 1762 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 SCN11AQ9UI33 1791 aa6.74□□□□□ -1.33
COL17A1-206ENST00000483876 PI4KAP2A4QPH2 592 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 POTEFA5A3E0 1075 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 F6X3S4 739 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 RGS3P49796 1198 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 DDR1Q08345 913 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 C8orf34Q49A92 452 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 SLC4A10Q6U841 1118 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 CCDC24Q8N4L8 307 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 PI4KAP1Q8N8J0 262 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 LINS1Q8NG48 757 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 ZNF496Q96IT1 587 aaPredicted RBP6.73□□□□□ -1.33
COL17A1-206ENST00000483876 MEIS3Q99687 375 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 TAOK3Q9H2K8 898 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 RNF186Q9NXI6 227 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 SCN4AP35499 1836 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 UTYO14607 1347 aa6.73□□□□□ -1.33
COL17A1-206ENST00000483876 H0YGN5 161 aa6.72□□□□□ -1.33
COL17A1-206ENST00000483876 C21orf2O43822 256 aa6.72□□□□□ -1.33
COL17A1-206ENST00000483876 CELF2O95319 508 aaKnown RBP6.72□□□□□ -1.33
COL17A1-206ENST00000483876 ANKRD45Q5TZF3 282 aa6.72□□□□□ -1.33
COL17A1-206ENST00000483876 BICDL1Q6ZP65 573 aa6.72□□□□□ -1.33
COL17A1-206ENST00000483876 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.72□□□□□ -1.33
COL17A1-206ENST00000483876 USP16Q9Y5T5 823 aa6.72□□□□□ -1.33
COL17A1-206ENST00000483876 LTBP3Q9NS15 1303 aa6.72□□□□□ -1.33
COL17A1-206ENST00000483876 UBTFL1P0CB47 393 aaPredicted RBP6.71□□□□□ -1.34
COL17A1-206ENST00000483876 ANP32AP39687 249 aaKnown RBP6.71□□□□□ -1.34
COL17A1-206ENST00000483876 SLC39A6Q13433 755 aa6.71□□□□□ -1.34
COL17A1-206ENST00000483876 MTX1Q13505 466 aa6.71□□□□□ -1.34
COL17A1-206ENST00000483876 POLA2Q14181 598 aa6.71□□□□□ -1.34
COL17A1-206ENST00000483876 BMP2KLQ5H9B9 411 aa6.71□□□□□ -1.34
COL17A1-206ENST00000483876 FBXO46Q6PJ61 603 aaPredicted RBP6.71□□□□□ -1.34
COL17A1-206ENST00000483876 ANKRD13DQ6ZTN6 518 aa6.71□□□□□ -1.34
COL17A1-206ENST00000483876 LRP10Q7Z4F1 713 aa6.71□□□□□ -1.34
COL17A1-206ENST00000483876 C2CD5Q86YS7 1000 aa6.71□□□□□ -1.34
COL17A1-206ENST00000483876 SYNE4Q8N205 404 aa6.71□□□□□ -1.34
COL17A1-206ENST00000483876 SSH3Q8TE77 659 aa6.71□□□□□ -1.34
COL17A1-206ENST00000483876 NECTIN2Q92692 538 aa6.71□□□□□ -1.34
COL17A1-206ENST00000483876 OSBPL3Q9H4L5 887 aa6.71□□□□□ -1.34
COL17A1-206ENST00000483876 ZBTB47Q9UFB7 747 aaPredicted RBP6.71□□□□□ -1.34
COL17A1-206ENST00000483876 H0YIN7 160 aa6.7□□□□□ -1.34
COL17A1-206ENST00000483876 POLRMTO00411 1230 aaKnown RBP6.7□□□□□ -1.34
COL17A1-206ENST00000483876 RAB11FIP3O75154 756 aa6.7□□□□□ -1.34
COL17A1-206ENST00000483876 NEXNQ0ZGT2 675 aa6.7□□□□□ -1.34
COL17A1-206ENST00000483876 HSP90AB4PQ58FF6 505 aa6.7□□□□□ -1.34
COL17A1-206ENST00000483876 SKAP1Q86WV1 359 aa6.7□□□□□ -1.34
COL17A1-206ENST00000483876 PLBD2Q8NHP8 589 aa6.7□□□□□ -1.34
COL17A1-206ENST00000483876 PIGBQ92521 554 aa6.7□□□□□ -1.34
COL17A1-206ENST00000483876 IPO9Q96P70 1041 aaKnown RBP6.7□□□□□ -1.34
COL17A1-206ENST00000483876 METTL22Q9BUU2 404 aaPredicted RBP6.7□□□□□ -1.34
COL17A1-206ENST00000483876 C1orf115Q9H7X2 142 aa6.7□□□□□ -1.34
COL17A1-206ENST00000483876 TMOD3Q9NYL9 352 aa6.7□□□□□ -1.34
COL17A1-206ENST00000483876 MAP3K2Q9Y2U5 619 aa6.7□□□□□ -1.34
COL17A1-206ENST00000483876 TRIOBPQ9H2D6 2365 aa6.7□□□□□ -1.34
COL17A1-206ENST00000483876 CCDC88AQ3V6T2 1871 aa6.7□□□□□ -1.34
COL17A1-206ENST00000483876 ZNF541Q9H0D2 1346 aa6.7□□□□□ -1.34
COL17A1-206ENST00000483876 PRAMEF22A3QJZ6 481 aa6.69□□□□□ -1.34
COL17A1-206ENST00000483876 RPS6KA4O75676 772 aa6.69□□□□□ -1.34
COL17A1-206ENST00000483876 KIF23Q02241 960 aaPredicted RBP6.69□□□□□ -1.34
COL17A1-206ENST00000483876 PROSER3Q2NL68 480 aa6.69□□□□□ -1.34
COL17A1-206ENST00000483876 COPS6Q7L5N1 327 aa6.69□□□□□ -1.34
COL17A1-206ENST00000483876 RIC3Q7Z5B4 369 aa6.69□□□□□ -1.34
COL17A1-206ENST00000483876 PLEKHM2Q8IWE5 1019 aa6.69□□□□□ -1.34
COL17A1-206ENST00000483876 DDRGK1Q96HY6 314 aa6.69□□□□□ -1.34
COL17A1-206ENST00000483876 LNPKQ9C0E8 428 aa6.69□□□□□ -1.34
COL17A1-206ENST00000483876 C9orf78Q9NZ63 289 aaPredicted RBP6.69□□□□□ -1.34
COL17A1-206ENST00000483876 SRP68Q9UHB9 627 aaKnown RBP6.69□□□□□ -1.34
COL17A1-206ENST00000483876 STXBP5LQ9Y2K9 1186 aa6.69□□□□□ -1.34
COL17A1-206ENST00000483876 NOP58Q9Y2X3 529 aaKnown RBP6.69□□□□□ -1.34
COL17A1-206ENST00000483876 LRRFIP2Q9Y608 721 aaKnown RBP6.69□□□□□ -1.34
COL17A1-206ENST00000483876 COL15A1P39059 1388 aa6.69□□□□□ -1.34
COL17A1-206ENST00000483876 GRM8O00222 908 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms