RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 DDR1Q08345 913 aa10.27□□□□□ -0.77
USP4-210ENST00000483212 SLC10A5Q5PT55 438 aa10.27□□□□□ -0.77
USP4-210ENST00000483212 LMBR1LQ6UX01 489 aa10.27□□□□□ -0.77
USP4-210ENST00000483212 BICDL1Q6ZP65 573 aa10.27□□□□□ -0.77
USP4-210ENST00000483212 TNRC6CQ9HCJ0 1690 aaKnown RBP10.27□□□□□ -0.77
USP4-210ENST00000483212 COL4A1P02462 1669 aa10.26□□□□□ -0.77
USP4-210ENST00000483212 FAM177BA6PVY3 158 aa10.26□□□□□ -0.77
USP4-210ENST00000483212 POLRMTO00411 1230 aaKnown RBP10.26□□□□□ -0.77
USP4-210ENST00000483212 PDE8AO60658 829 aa10.26□□□□□ -0.77
USP4-210ENST00000483212 PDE4AP27815 886 aa10.26□□□□□ -0.77
USP4-210ENST00000483212 CTSWP56202 376 aa10.26□□□□□ -0.77
USP4-210ENST00000483212 PTPN12Q05209 780 aaKnown RBP10.26□□□□□ -0.77
USP4-210ENST00000483212 ERFEQ4G0M1 354 aa10.26□□□□□ -0.77
USP4-210ENST00000483212 NUTM1Q86Y26 1132 aa10.26□□□□□ -0.77
USP4-210ENST00000483212 TTLL11Q8NHH1 800 aa10.26□□□□□ -0.77
USP4-210ENST00000483212 SETDB2Q96T68 719 aa10.26□□□□□ -0.77
USP4-210ENST00000483212 COPRSQ9NQ92 184 aa10.26□□□□□ -0.77
USP4-210ENST00000483212 EXOC6BQ9Y2D4 811 aa10.26□□□□□ -0.77
USP4-210ENST00000483212 RTL9Q8NET4 1388 aa10.26□□□□□ -0.77
USP4-210ENST00000483212 CASZ1Q86V15 1759 aa10.25□□□□□ -0.77
USP4-210ENST00000483212 HCLS1P14317 486 aaPredicted RBP10.25□□□□□ -0.77
USP4-210ENST00000483212 FAM161AQ3B820 660 aa10.25□□□□□ -0.77
USP4-210ENST00000483212 C3orf67Q6ZVT6 689 aa10.25□□□□□ -0.77
USP4-210ENST00000483212 KLHDC4Q8TBB5 520 aa10.25□□□□□ -0.77
USP4-210ENST00000483212 NYXQ9GZU5 481 aa10.25□□□□□ -0.77
USP4-210ENST00000483212 PA2G4Q9UQ80 394 aaKnown RBP10.25□□□□□ -0.77
USP4-210ENST00000483212 MYH3P11055 1940 aa10.25□□□□□ -0.77
USP4-210ENST00000483212 SURF6O75683 361 aaKnown RBP10.24□□□□□ -0.77
USP4-210ENST00000483212 SF3B3Q15393 1217 aaKnown RBP10.24□□□□□ -0.77
USP4-210ENST00000483212 PRR5LQ6MZQ0 368 aa10.24□□□□□ -0.77
USP4-210ENST00000483212 TPTE2Q6XPS3 522 aa10.24□□□□□ -0.77
USP4-210ENST00000483212 CHD1LQ86WJ1 897 aa10.24□□□□□ -0.77
USP4-210ENST00000483212 NBPF5PQ86XG9 351 aaPredicted RBP10.24□□□□□ -0.77
USP4-210ENST00000483212 NLGN1Q8N2Q7 840 aa10.24□□□□□ -0.77
USP4-210ENST00000483212 PDGFDQ9GZP0 370 aaPredicted RBP10.24□□□□□ -0.77
USP4-210ENST00000483212 GREM2Q9H772 168 aa10.24□□□□□ -0.77
USP4-210ENST00000483212 RAB11FIP3O75154 756 aa10.23□□□□□ -0.77
USP4-210ENST00000483212 SASH1O94885 1247 aa10.23□□□□□ -0.77
USP4-210ENST00000483212 SERPINB2P05120 415 aa10.23□□□□□ -0.77
USP4-210ENST00000483212 ANKRD45Q5TZF3 282 aa10.23□□□□□ -0.77
USP4-210ENST00000483212 ILDR2Q71H61 639 aa10.23□□□□□ -0.77
USP4-210ENST00000483212 LNPKQ9C0E8 428 aa10.23□□□□□ -0.77
USP4-210ENST00000483212 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.23□□□□□ -0.77
USP4-210ENST00000483212 SALL3Q9BXA9 1300 aa10.23□□□□□ -0.77
USP4-210ENST00000483212 SMARCA5O60264 1052 aaPredicted RBP10.22□□□□□ -0.77
USP4-210ENST00000483212 HSP90B1P14625 803 aaKnown RBP10.22□□□□□ -0.77
USP4-210ENST00000483212 HSP90AB4PQ58FF6 505 aa10.22□□□□□ -0.77
USP4-210ENST00000483212 ATG9AQ7Z3C6 839 aa10.22□□□□□ -0.77
USP4-210ENST00000483212 CCDC24Q8N4L8 307 aa10.22□□□□□ -0.77
USP4-210ENST00000483212 CNBD1Q8NA66 436 aa10.22□□□□□ -0.77
USP4-210ENST00000483212 RHPN1Q8TCX5 695 aa10.22□□□□□ -0.77
USP4-210ENST00000483212 ZNF594Q96JF6 807 aaPredicted RBP10.22□□□□□ -0.77
USP4-210ENST00000483212 CCDC85AQ96PX6 553 aaPredicted RBP10.22□□□□□ -0.77
USP4-210ENST00000483212 ZNF219Q9P2Y4 722 aaPredicted RBP10.22□□□□□ -0.77
USP4-210ENST00000483212 ANKRD31Q8N7Z5 1873 aa10.21□□□□□ -0.77
USP4-210ENST00000483212 EYA2O00167 538 aa10.21□□□□□ -0.77
USP4-210ENST00000483212 CIAO1O76071 339 aa10.21□□□□□ -0.77
USP4-210ENST00000483212 MMP10P09238 476 aa10.21□□□□□ -0.77
USP4-210ENST00000483212 ITGA6P23229 1130 aa10.21□□□□□ -0.77
USP4-210ENST00000483212 IFIT5Q13325 482 aaKnown RBP10.21□□□□□ -0.77
USP4-210ENST00000483212 CCDC57Q2TAC2 916 aa10.21□□□□□ -0.77
USP4-210ENST00000483212 MSL1Q68DK7 614 aa10.21□□□□□ -0.77
USP4-210ENST00000483212 C16orf71Q8IYS4 520 aaPredicted RBP10.21□□□□□ -0.77
USP4-210ENST00000483212 KIF1BPQ96EK5 621 aa10.21□□□□□ -0.77
USP4-210ENST00000483212 PUS3Q9BZE2 481 aaKnown RBP10.21□□□□□ -0.77
USP4-210ENST00000483212 LRRCC1Q9C099 1032 aa10.21□□□□□ -0.77
USP4-210ENST00000483212 SEC31BQ9NQW1 1179 aa10.21□□□□□ -0.77
USP4-210ENST00000483212 FBXO3Q9UK99 471 aa10.21□□□□□ -0.77
USP4-210ENST00000483212 CHMP3Q9Y3E7 222 aa10.21□□□□□ -0.77
USP4-210ENST00000483212 ANKRD18BA2A2Z9 1011 aa10.2□□□□□ -0.78
USP4-210ENST00000483212 KLRG2A4D1S0 409 aaPredicted RBP10.2□□□□□ -0.78
USP4-210ENST00000483212 APBB1O00213 710 aa10.2□□□□□ -0.78
USP4-210ENST00000483212 CRY2Q49AN0 593 aa10.2□□□□□ -0.78
USP4-210ENST00000483212 CCDC152Q4G0S7 254 aa10.2□□□□□ -0.78
USP4-210ENST00000483212 LRRC24Q50LG9 513 aa10.2□□□□□ -0.78
USP4-210ENST00000483212 ERC1Q8IUD2 1116 aa10.2□□□□□ -0.78
USP4-210ENST00000483212 OTUD7AQ8TE49 926 aaPredicted RBP10.2□□□□□ -0.78
USP4-210ENST00000483212 SLC16A10Q8TF71 515 aa10.2□□□□□ -0.78
USP4-210ENST00000483212 SIL1Q9H173 461 aa10.2□□□□□ -0.78
USP4-210ENST00000483212 POTEMA6NI47 508 aa10.19□□□□□ -0.78
USP4-210ENST00000483212 GTF2E1P29083 439 aaPredicted RBP10.19□□□□□ -0.78
USP4-210ENST00000483212 RGS3P49796 1198 aa10.19□□□□□ -0.78
USP4-210ENST00000483212 FXR2P51116 673 aaKnown RBP eCLIP10.19□□□□□ -0.78
USP4-210ENST00000483212 G3BP1Q13283 466 aaKnown RBP eCLIP10.19□□□□□ -0.78
USP4-210ENST00000483212 PLEKHM2Q8IWE5 1019 aa10.19□□□□□ -0.78
USP4-210ENST00000483212 NLRP3Q96P20 1036 aa10.19□□□□□ -0.78
USP4-210ENST00000483212 IL1RAPL2Q9NP60 686 aa10.19□□□□□ -0.78
USP4-210ENST00000483212 PCDH10Q9P2E7 1040 aa10.19□□□□□ -0.78
USP4-210ENST00000483212 RIPOR2Q9Y4F9 1068 aa10.19□□□□□ -0.78
USP4-210ENST00000483212 COL11A2P13942 1736 aaPredicted RBP10.19□□□□□ -0.78
USP4-210ENST00000483212 ZNF609O15014 1411 aa10.18□□□□□ -0.78
USP4-210ENST00000483212 IL15P40933 162 aaPredicted RBP10.18□□□□□ -0.78
USP4-210ENST00000483212 ST5P78524 1137 aa10.18□□□□□ -0.78
USP4-210ENST00000483212 TFCP2Q12800 502 aa10.18□□□□□ -0.78
USP4-210ENST00000483212 OS9Q13438 667 aaPredicted RBP10.18□□□□□ -0.78
USP4-210ENST00000483212 VGLL2Q8N8G2 317 aa10.18□□□□□ -0.78
USP4-210ENST00000483212 EAF2Q96CJ1 260 aaPredicted RBP10.18□□□□□ -0.78
USP4-210ENST00000483212 BRIP1Q9BX63 1249 aa10.18□□□□□ -0.78
USP4-210ENST00000483212 OSBPL3Q9H4L5 887 aa10.18□□□□□ -0.78
USP4-210ENST00000483212 A0A1B0GUL6 1792 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms