RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 RSRC1Q96IZ7 334 aaKnown RBP10.11□□□□□ -0.79
SYNE1-224ENST00000478916 RIMS2Q9UQ26 1411 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 KIF4AO95239 1232 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 CEP57Q86XR8 500 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 SH2B1Q9NRF2 756 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-224ENST00000478916 DDX19AQ9NUU7 478 aaKnown RBP10.11□□□□□ -0.79
SYNE1-224ENST00000478916 RARSP54136 660 aaKnown RBP10.1□□□□□ -0.79
SYNE1-224ENST00000478916 CCDC121Q6ZUS5 278 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 OTUD6BQ8N6M0 293 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 CHMP4BP1P59074 171 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 ZNF526Q8TF50 670 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-224ENST00000478916 IKBKGQ9Y6K9 419 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 IFI16Q16666 785 aaKnown RBP10.1□□□□□ -0.79
SYNE1-224ENST00000478916 EVI5LQ96CN4 794 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 C8orf37Q96NL8 207 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 JADE2Q9NQC1 790 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 HDAC9Q9UKV0 1011 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 MACROD2A1Z1Q3 448 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 KIF20AO95235 890 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 UQCRFS1P1P0C7P4 283 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 ATP6V1AP38606 617 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 SSRP1Q08945 709 aaKnown RBP10.1□□□□□ -0.79
SYNE1-224ENST00000478916 CCDC8Q9H0W5 538 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-224ENST00000478916 F6X3S4 739 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 KIF3CO14782 793 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 BAG4O95429 457 aaKnown RBP10.1□□□□□ -0.79
SYNE1-224ENST00000478916 GBP6Q6ZN66 633 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 CPLX3Q8WVH0 158 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 SETDB2Q96T68 719 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 PEG3Q9GZU2 1588 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 CCDC194A0A1B0GVG4 234 aa10.1□□□□□ -0.79
SYNE1-224ENST00000478916 ZGPATQ8N5A5 531 aaKnown RBP10.1□□□□□ -0.79
SYNE1-224ENST00000478916 STMN4Q9H169 189 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-224ENST00000478916 ZFYP08048 801 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-224ENST00000478916 DDB1Q16531 1140 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 PPIP5K1Q6PFW1 1433 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 EBAG9O00559 213 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 IFIT3O14879 490 aaKnown RBP10.09□□□□□ -0.79
SYNE1-224ENST00000478916 GNG11P61952 73 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 CNNM3Q8NE01 707 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 RALGAPBQ86X10 1494 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 CAVIN2O95810 425 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 ATRIPQ8WXE1 791 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 C8orf76Q96K31 380 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 GOLGA8AA7E2F4 631 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 GOLGA8BA8MQT2 603 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 SMARCA5O60264 1052 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-224ENST00000478916 POLD1P28340 1107 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 PRPF4BQ13523 1007 aaKnown RBP10.09□□□□□ -0.79
SYNE1-224ENST00000478916 TMEM87AQ8NBN3 555 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 COMMD10Q9Y6G5 202 aa10.09□□□□□ -0.79
SYNE1-224ENST00000478916 GPATCH8Q9UKJ3 1502 aaKnown RBP10.08□□□□□ -0.8
SYNE1-224ENST00000478916 CAPN2P17655 700 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 CRNKL1Q9BZJ0 848 aaKnown RBP10.08□□□□□ -0.8
SYNE1-224ENST00000478916 SARNPP82979 210 aaKnown RBP10.08□□□□□ -0.8
SYNE1-224ENST00000478916 UBE3BQ7Z3V4 1068 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 SMC6Q96SB8 1091 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 NYXQ9GZU5 481 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 IL16Q14005 1332 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 NOP2P46087 812 aaKnown RBP10.08□□□□□ -0.8
SYNE1-224ENST00000478916 ANAPC4Q9UJX5 808 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 LIG1P18858 919 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 SWAP70Q9UH65 585 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 RPRD2Q5VT52 1461 aaKnown RBP10.08□□□□□ -0.8
SYNE1-224ENST00000478916 NLRP5P59047 1200 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 NBPF14Q5TI25 921 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 FERMT3Q86UX7 667 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 KAT14Q9H8E8 782 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 TTC14Q96N46 770 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 ECHDC1Q9NTX5 307 aa10.08□□□□□ -0.8
SYNE1-224ENST00000478916 MYCNP04198 464 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-224ENST00000478916 CLCN1P35523 988 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 MTIF2P46199 727 aaKnown RBP10.07□□□□□ -0.8
SYNE1-224ENST00000478916 KIAA0753Q2KHM9 967 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 CKAP2LQ8IYA6 745 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 MIPOL1Q8TD10 442 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 TNPO1Q92973 898 aaKnown RBP10.07□□□□□ -0.8
SYNE1-224ENST00000478916 RASSF4Q9H2L5 321 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 ATP5J2-PTCD1G3V325 749 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 TUBB4BP68371 445 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 MCM6Q14566 821 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 ANKRD13DQ6ZTN6 518 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 CCDC94Q9BW85 323 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-224ENST00000478916 FERMT1Q9BQL6 677 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 SRRTQ9BXP5 876 aaKnown RBP10.07□□□□□ -0.8
SYNE1-224ENST00000478916 A0A1B0GUA9 196 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 PAIP2Q9BPZ3 127 aaKnown RBP10.07□□□□□ -0.8
SYNE1-224ENST00000478916 TSPY2A6NKD2 308 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 GOLIM4O00461 696 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 CETN1Q12798 172 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 TRAF1Q13077 416 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 NAA25Q14CX7 972 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 ZSWIM4Q9H7M6 989 aa10.07□□□□□ -0.8
SYNE1-224ENST00000478916 SYCP2Q9BX26 1530 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 IL2RBP14784 551 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 CCDC129Q6ZRS4 1044 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 OGFOD1Q8N543 542 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 IQCGQ9H095 443 aaKnown RBP10.06□□□□□ -0.8
SYNE1-224ENST00000478916 C19orf44Q9H6X5 657 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 CTAGE15A4D2H0 777 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms