RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 UQCRHP07919 91 aa17.1■□□□□ 0.33
HDAC6-220ENST00000477528 Q6ZUG5 572 aa17.1■□□□□ 0.33
HDAC6-220ENST00000477528 SMTNL1A8MU46 457 aa17.1■□□□□ 0.33
HDAC6-220ENST00000477528 HAND2P61296 217 aa17.1■□□□□ 0.33
HDAC6-220ENST00000477528 DNM1Q05193 864 aaKnown RBP17.1■□□□□ 0.33
HDAC6-220ENST00000477528 USP16Q9Y5T5 823 aa17.1■□□□□ 0.33
HDAC6-220ENST00000477528 CCDC196A0A1B0GTZ2 297 aa17.09■□□□□ 0.33
HDAC6-220ENST00000477528 UQCRFS1P1P0C7P4 283 aa17.09■□□□□ 0.33
HDAC6-220ENST00000477528 ATP2B3Q16720 1220 aa17.09■□□□□ 0.33
HDAC6-220ENST00000477528 MNS1Q8NEH6 495 aa17.09■□□□□ 0.33
HDAC6-220ENST00000477528 MTMR7Q9Y216 660 aa17.09■□□□□ 0.33
HDAC6-220ENST00000477528 ADGRB1O14514 1584 aa17.09■□□□□ 0.33
HDAC6-220ENST00000477528 ADCY5O95622 1261 aa17.09■□□□□ 0.33
HDAC6-220ENST00000477528 HCLS1P14317 486 aaPredicted RBP17.09■□□□□ 0.33
HDAC6-220ENST00000477528 SYT1P21579 422 aa17.09■□□□□ 0.33
HDAC6-220ENST00000477528 CAVIN4Q5BKX8 364 aa17.09■□□□□ 0.33
HDAC6-220ENST00000477528 DLC1Q96QB1 1528 aa17.09■□□□□ 0.33
HDAC6-220ENST00000477528 CBFA2T2O43439 604 aa17.09■□□□□ 0.33
HDAC6-220ENST00000477528 GCKRQ14397 625 aa17.09■□□□□ 0.33
HDAC6-220ENST00000477528 KDRP35968 1356 aa17.09■□□□□ 0.33
HDAC6-220ENST00000477528 GIMAP6Q6P9H5 292 aa17.08■□□□□ 0.33
HDAC6-220ENST00000477528 ANTXR1Q9H6X2 564 aa17.08■□□□□ 0.33
HDAC6-220ENST00000477528 STAP2Q9UGK3 403 aa17.08■□□□□ 0.33
HDAC6-220ENST00000477528 IQSEC2Q5JU85 1478 aa17.08■□□□□ 0.32
HDAC6-220ENST00000477528 CAVIN2O95810 425 aa17.08■□□□□ 0.32
HDAC6-220ENST00000477528 FILIP1LQ4L180 1135 aa17.08■□□□□ 0.32
HDAC6-220ENST00000477528 BICDL1Q6ZP65 573 aa17.08■□□□□ 0.32
HDAC6-220ENST00000477528 SLC12A7Q9Y666 1083 aa17.08■□□□□ 0.32
HDAC6-220ENST00000477528 FILIP1Q7Z7B0 1213 aa17.08■□□□□ 0.32
HDAC6-220ENST00000477528 FSIP1Q8NA03 581 aa17.08■□□□□ 0.32
HDAC6-220ENST00000477528 LRRC2Q9BYS8 371 aa17.08■□□□□ 0.32
HDAC6-220ENST00000477528 RNF41Q9H4P4 317 aaPredicted RBP17.08■□□□□ 0.32
HDAC6-220ENST00000477528 TNNI3KQ59H18 835 aa17.08■□□□□ 0.32
HDAC6-220ENST00000477528 ORC3Q9UBD5 711 aaPredicted RBP17.08■□□□□ 0.32
HDAC6-220ENST00000477528 FPGT-TNNI3KV9GXZ4 949 aa17.08■□□□□ 0.32
HDAC6-220ENST00000477528 ZC3H13Q5T200 1668 aaKnown RBP17.08■□□□□ 0.32
HDAC6-220ENST00000477528 ANKARQ7Z5J8 1434 aa17.07■□□□□ 0.32
HDAC6-220ENST00000477528 PIK3C2BO00750 1634 aa17.07■□□□□ 0.32
HDAC6-220ENST00000477528 CPA1P15085 419 aa17.07■□□□□ 0.32
HDAC6-220ENST00000477528 ZNF496Q96IT1 587 aaPredicted RBP17.07■□□□□ 0.32
HDAC6-220ENST00000477528 RNF113AO15541 343 aaKnown RBP17.07■□□□□ 0.32
HDAC6-220ENST00000477528 CEP131Q9UPN4 1083 aa17.07■□□□□ 0.32
HDAC6-220ENST00000477528 IFIT3O14879 490 aaKnown RBP17.07■□□□□ 0.32
HDAC6-220ENST00000477528 GOLGA8AA7E2F4 631 aa17.06■□□□□ 0.32
HDAC6-220ENST00000477528 RBM10P98175 930 aaKnown RBP17.06■□□□□ 0.32
HDAC6-220ENST00000477528 VSIG10Q8N0Z9 540 aa17.06■□□□□ 0.32
HDAC6-220ENST00000477528 MINDY4BA8MYZ0 360 aa17.06■□□□□ 0.32
HDAC6-220ENST00000477528 ADAMTS2O95450 1211 aa17.06■□□□□ 0.32
HDAC6-220ENST00000477528 KLHDC4Q8TBB5 520 aa17.06■□□□□ 0.32
HDAC6-220ENST00000477528 ARGLU1Q9NWB6 273 aaPredicted RBP17.06■□□□□ 0.32
HDAC6-220ENST00000477528 CCAR1Q8IX12 1150 aaKnown RBP17.05■□□□□ 0.32
HDAC6-220ENST00000477528 SLC27A2O14975 620 aa17.05■□□□□ 0.32
HDAC6-220ENST00000477528 ARHGEF25Q86VW2 580 aa17.05■□□□□ 0.32
HDAC6-220ENST00000477528 GOLGA6L1Q8N7Z2 621 aa17.05■□□□□ 0.32
HDAC6-220ENST00000477528 CCDC112Q8NEF3 446 aa17.05■□□□□ 0.32
HDAC6-220ENST00000477528 ZNF165P49910 485 aa17.05■□□□□ 0.32
HDAC6-220ENST00000477528 KLF18A0A0U1RQI7 1052 aa17.05■□□□□ 0.32
HDAC6-220ENST00000477528 CLSTN1O94985 981 aa17.04■□□□□ 0.32
HDAC6-220ENST00000477528 STX1AQ16623 288 aa17.04■□□□□ 0.32
HDAC6-220ENST00000477528 HS1BP3Q53T59 392 aa17.04■□□□□ 0.32
HDAC6-220ENST00000477528 DHX32Q7L7V1 743 aaKnown RBP17.04■□□□□ 0.32
HDAC6-220ENST00000477528 FAM227BQ96M60 508 aa17.04■□□□□ 0.32
HDAC6-220ENST00000477528 CDC5LQ99459 802 aaKnown RBP17.04■□□□□ 0.32
HDAC6-220ENST00000477528 HELLSQ9NRZ9 838 aa17.04■□□□□ 0.32
HDAC6-220ENST00000477528 LMBRD1Q9NUN5 540 aa17.04■□□□□ 0.32
HDAC6-220ENST00000477528 SSRP1Q08945 709 aaKnown RBP17.04■□□□□ 0.32
HDAC6-220ENST00000477528 NEURL1BA8MQ27 555 aa17.04■□□□□ 0.32
HDAC6-220ENST00000477528 EYA2O00167 538 aa17.04■□□□□ 0.32
HDAC6-220ENST00000477528 RPS6KB1P23443 525 aa17.04■□□□□ 0.32
HDAC6-220ENST00000477528 ZNF445P59923 1031 aa17.04■□□□□ 0.32
HDAC6-220ENST00000477528 CCDC191Q8NCU4 936 aa17.04■□□□□ 0.32
HDAC6-220ENST00000477528 IARSP41252 1262 aaKnown RBP17.04■□□□□ 0.32
HDAC6-220ENST00000477528 METAP2P50579 478 aaKnown RBP eCLIP17.04■□□□□ 0.32
HDAC6-220ENST00000477528 DBNDD2Q9BQY9 259 aa17.04■□□□□ 0.32
HDAC6-220ENST00000477528 TMEM67Q5HYA8 995 aa17.03■□□□□ 0.32
HDAC6-220ENST00000477528 PHKG2P15735 406 aa17.03■□□□□ 0.32
HDAC6-220ENST00000477528 TM6SF1Q9BZW5 370 aa17.03■□□□□ 0.32
HDAC6-220ENST00000477528 BRD1O95696 1058 aa17.03■□□□□ 0.32
HDAC6-220ENST00000477528 GPS2Q13227 327 aa17.03■□□□□ 0.32
HDAC6-220ENST00000477528 CLIP2Q9UDT6 1046 aa17.03■□□□□ 0.32
HDAC6-220ENST00000477528 FAM200AQ8TCP9 573 aa17.02■□□□□ 0.32
HDAC6-220ENST00000477528 DACT1Q9NYF0 836 aa17.02■□□□□ 0.32
HDAC6-220ENST00000477528 SMARCE1Q969G3 411 aa17.02■□□□□ 0.32
HDAC6-220ENST00000477528 PALD1Q9ULE6 856 aa17.02■□□□□ 0.32
HDAC6-220ENST00000477528 CCDC152Q4G0S7 254 aa17.02■□□□□ 0.31
HDAC6-220ENST00000477528 CCDC70Q6NSX1 233 aa17.02■□□□□ 0.31
HDAC6-220ENST00000477528 A0A0U1RQG5 324 aaPredicted RBP17.02■□□□□ 0.31
HDAC6-220ENST00000477528 PPFIA3O75145 1194 aa17.02■□□□□ 0.31
HDAC6-220ENST00000477528 ZPR1O75312 459 aa17.02■□□□□ 0.31
HDAC6-220ENST00000477528 HSPA2P54652 639 aa17.02■□□□□ 0.31
HDAC6-220ENST00000477528 MICU3Q86XE3 530 aa17.02■□□□□ 0.31
HDAC6-220ENST00000477528 IQCA1Q86XH1 822 aa17.02■□□□□ 0.31
HDAC6-220ENST00000477528 AGLP35573 1532 aa17.01■□□□□ 0.31
HDAC6-220ENST00000477528 POLR3DP05423 398 aaPredicted RBP17.01■□□□□ 0.31
HDAC6-220ENST00000477528 SLC9C2Q5TAH2 1124 aa17.01■□□□□ 0.31
HDAC6-220ENST00000477528 MFSD6Q6ZSS7 791 aa17.01■□□□□ 0.31
HDAC6-220ENST00000477528 RRP9O43818 475 aaKnown RBP17.01■□□□□ 0.31
HDAC6-220ENST00000477528 MROH2AA6NES4 1674 aa17.01■□□□□ 0.31
HDAC6-220ENST00000477528 CLTCQ00610 1675 aaKnown RBP17.01■□□□□ 0.31
HDAC6-220ENST00000477528 CD2BP2O95400 341 aaKnown RBP17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms