RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 NIM1KQ8IY84 436 aa15.94■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 SUPT20HQ8NEM7 779 aa15.94■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 MKRN1Q9UHC7 482 aaKnown RBP15.94■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 ZNRF3Q9ULT6 936 aa15.94■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 DUOX1Q9NRD9 1551 aa15.94■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 COL4A1P02462 1669 aa15.93■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 TMC4Q7Z404 712 aa15.93■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 MPNDQ8N594 471 aa15.93■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 FAM89AQ96GI7 184 aa15.93■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 CLEC11AQ9Y240 323 aa15.93■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 GJA3Q9Y6H8 435 aa15.93■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 ATP5J2-PTCD1G3V325 749 aa15.92■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 GNAI1P63096 354 aa15.92■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 DPP8Q6V1X1 898 aaPredicted RBP15.92■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 USP50Q70EL3 339 aaPredicted RBP15.92■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 TRPM7Q96QT4 1865 aa15.91■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 RASSF10A6NK89 507 aa15.91■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 VEGFBP49765 207 aa15.91■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 C8orf58Q8NAV2 365 aa15.91■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 TMX4Q9H1E5 349 aaPredicted RBP15.91■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 PHAXQ9H814 394 aaKnown RBP15.91■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 GPRC5DQ9NZD1 345 aa15.91■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 PGAP2Q9UHJ9 254 aa15.91■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 YDJCA8MPS7 323 aa15.9■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 LMOD1P29536 600 aaPredicted RBP15.9■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 CALD1Q05682 793 aaKnown RBP15.9■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 CCDC184Q52MB2 194 aa15.9■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 CELF1Q92879 486 aaKnown RBP15.9■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 ZNF428Q96B54 188 aa15.9■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 ZBTB38Q8NAP3 1195 aaPredicted RBP15.89■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 ADARB2Q9NS39 739 aaKnown RBP15.89■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 CDHR2Q9BYE9 1310 aa15.89■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 IRS4O14654 1257 aaPredicted RBP15.88■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 FMR1Q06787 632 aaKnown RBP eCLIP15.88■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 CCDC27Q2M243 656 aa15.88■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 CST9Q5W186 159 aa15.88■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 CIAPIN1Q6FI81 312 aa15.88■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 ELL2O00472 640 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 GMPSP49915 693 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 HIRAP54198 1017 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 DEFB115Q30KQ5 88 aa15.87■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 NCBP3Q53F19 620 aaKnown RBP15.87■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 RIC3Q7Z5B4 369 aa15.87■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 TSPYL6Q8N831 410 aa15.87■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 CCDC191Q8NCU4 936 aa15.87■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 WBP1LQ9NX94 342 aa15.87■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 POLLQ9UGP5 575 aa15.87■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 FOXN1O15353 648 aa15.86■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 RPS8P62241 208 aaKnown RBP15.86■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 TNIP1Q15025 636 aa15.86■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 METTL22Q9BUU2 404 aaPredicted RBP15.86■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 POLR2AP24928 1970 aaKnown RBP15.86■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 RAD17O75943 681 aa15.85■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 PCCAP05165 728 aaPredicted RBP15.85■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 GPSM2P81274 684 aa15.85■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 GOLGA2Q08379 1002 aa15.85■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 WASHC4Q2M389 1173 aa15.85■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 RTL5Q5HYW3 569 aaPredicted RBP15.85■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 TNS4Q8IZW8 715 aa15.85■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 ZC3H15Q8WU90 426 aaKnown RBP15.85■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 PODXL2Q9NZ53 605 aa15.85■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 SCN9AQ15858 1988 aa15.84■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 TRAF5O00463 557 aa15.84■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 CCDC30Q5VVM6 783 aa15.84■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 WWC1Q8IX03 1113 aa15.84■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 DPF2Q92785 391 aa15.84■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 MYD88Q99836 296 aa15.84■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 CHMP4AQ9BY43 222 aa15.84■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 SEC31BQ9NQW1 1179 aa15.84■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 NSFL1CQ9UNZ2 370 aaKnown RBP15.84■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 THSD7BQ9C0I4 1608 aa15.83■□□□□ 0.13
MSH5-SAPCD1-205ENST00000476085 SHTN1A0MZ66 631 aa15.83■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 TBC1D16Q8TBP0 767 aa15.83■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 PRDM10Q9NQV6 1147 aa15.83■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 CNOT7Q9UIV1 285 aaKnown RBP15.83■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 WDR33Q9C0J8 1336 aaKnown RBP15.83■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 CACNA1FO60840 1977 aa15.82■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 PSMD14O00487 310 aa15.82■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 PDE8AO60658 829 aa15.82■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 IGKV5-2P06315 115 aa15.82■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 HSP90B1P14625 803 aaKnown RBP15.82■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 TRPM4Q8TD43 1214 aa15.82■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 KCNQ5Q9NR82 932 aa15.82■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 CWC25Q9NXE8 425 aaPredicted RBP15.82■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 TLL2Q9Y6L7 1015 aa15.82■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 IL16Q14005 1332 aa15.81■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 KSR2Q6VAB6 950 aa15.81■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 RTL9Q8NET4 1388 aa15.81■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 TSR2Q969E8 191 aaKnown RBP15.81■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 BCL2L13Q9BXK5 485 aa15.81■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 DBNDD1Q9H9R9 158 aa15.81■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 ZBTB12Q9Y330 459 aaPredicted RBP15.81■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 MYH3P11055 1940 aa15.8■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 PI4KAP2A4QPH2 592 aa15.8■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 C6orf229H3BNL8 230 aa15.8■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 DDX58O95786 925 aaKnown RBP15.8■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 CTCFP49711 727 aaPredicted RBP15.8■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 PI4KAP1Q8N8J0 262 aa15.8■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 JARID2Q92833 1246 aaPredicted RBP15.8■□□□□ 0.12
MSH5-SAPCD1-205ENST00000476085 GLIS2Q9BZE0 524 aaPredicted RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms