RNA–Protein interactions for RNA: ENST00000474455.1

SMIM11A-204, Transcript of small integral membrane protein 11A, humanhuman

TSL 1 (best)

Gene SMIM11A, Length 1,857 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM11A-204ENST00000474455 PDGFDQ9GZP0 370 aaPredicted RBP25.55■■□□□ 1.68
SMIM11A-204ENST00000474455 HMGB2P26583 209 aaKnown RBP25.55■■□□□ 1.68
SMIM11A-204ENST00000474455 TBC1D2Q9BYX2 928 aa25.55■■□□□ 1.68
SMIM11A-204ENST00000474455 RGL2O15211 777 aa25.54■■□□□ 1.68
SMIM11A-204ENST00000474455 HMMRO75330 724 aa25.54■■□□□ 1.68
SMIM11A-204ENST00000474455 STK32BQ9NY57 414 aa25.54■■□□□ 1.68
SMIM11A-204ENST00000474455 HDAC5Q9UQL6 1122 aa25.54■■□□□ 1.68
SMIM11A-204ENST00000474455 CDHR2Q9BYE9 1310 aa25.54■■□□□ 1.68
SMIM11A-204ENST00000474455 ERFEQ4G0M1 354 aa25.53■■□□□ 1.68
SMIM11A-204ENST00000474455 SH3TC1Q8TE82 1336 aa25.53■■□□□ 1.68
SMIM11A-204ENST00000474455 CHMP3Q9Y3E7 222 aa25.53■■□□□ 1.68
SMIM11A-204ENST00000474455 TAF1P21675 1872 aa25.52■■□□□ 1.68
SMIM11A-204ENST00000474455 ILDR2Q71H61 639 aa25.52■■□□□ 1.68
SMIM11A-204ENST00000474455 QSER1Q2KHR3 1735 aa25.52■■□□□ 1.68
SMIM11A-204ENST00000474455 GCC1Q96CN9 775 aa25.51■■□□□ 1.67
SMIM11A-204ENST00000474455 PLA2G12BQ9BX93 195 aa25.51■■□□□ 1.67
SMIM11A-204ENST00000474455 SLKQ9H2G2 1235 aaPredicted RBP25.51■■□□□ 1.67
SMIM11A-204ENST00000474455 RFX5P48382 616 aaPredicted RBP25.51■■□□□ 1.67
SMIM11A-204ENST00000474455 ANKRD45Q5TZF3 282 aa25.51■■□□□ 1.67
SMIM11A-204ENST00000474455 LAMB2P55268 1798 aa25.5■■□□□ 1.67
SMIM11A-204ENST00000474455 SMARCA5O60264 1052 aaPredicted RBP25.5■■□□□ 1.67
SMIM11A-204ENST00000474455 SURF6O75683 361 aaKnown RBP25.5■■□□□ 1.67
SMIM11A-204ENST00000474455 TM4SF1P30408 202 aa25.5■■□□□ 1.67
SMIM11A-204ENST00000474455 MSL1Q68DK7 614 aa25.5■■□□□ 1.67
SMIM11A-204ENST00000474455 NBPF5PQ86XG9 351 aaPredicted RBP25.5■■□□□ 1.67
SMIM11A-204ENST00000474455 TTLL11Q8NHH1 800 aa25.49■■□□□ 1.67
SMIM11A-204ENST00000474455 ABCC12Q96J65 1359 aa25.49■■□□□ 1.67
SMIM11A-204ENST00000474455 PDE8AO60658 829 aa25.49■■□□□ 1.67
SMIM11A-204ENST00000474455 CSF1RP07333 972 aa25.49■■□□□ 1.67
SMIM11A-204ENST00000474455 C3orf67Q6ZVT6 689 aa25.49■■□□□ 1.67
SMIM11A-204ENST00000474455 FLAD1Q8NFF5 587 aa25.49■■□□□ 1.67
SMIM11A-204ENST00000474455 LNPKQ9C0E8 428 aa25.49■■□□□ 1.67
SMIM11A-204ENST00000474455 NUCB1Q02818 461 aa25.48■■□□□ 1.67
SMIM11A-204ENST00000474455 DDR1Q08345 913 aa25.48■■□□□ 1.67
SMIM11A-204ENST00000474455 ZNF594Q96JF6 807 aaPredicted RBP25.48■■□□□ 1.67
SMIM11A-204ENST00000474455 SIL1Q9H173 461 aa25.48■■□□□ 1.67
SMIM11A-204ENST00000474455 CTSWP56202 376 aa25.47■■□□□ 1.67
SMIM11A-204ENST00000474455 PTPN12Q05209 780 aaKnown RBP25.47■■□□□ 1.67
SMIM11A-204ENST00000474455 GTF2E1P29083 439 aaPredicted RBP25.47■■□□□ 1.67
SMIM11A-204ENST00000474455 GREM2Q9H772 168 aa25.47■■□□□ 1.67
SMIM11A-204ENST00000474455 CARMIL3Q8ND23 1372 aa25.46■■□□□ 1.67
SMIM11A-204ENST00000474455 C22orf23Q9BZE7 217 aa25.46■■□□□ 1.67
SMIM11A-204ENST00000474455 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.46■■□□□ 1.67
SMIM11A-204ENST00000474455 TPTE2Q6XPS3 522 aa25.45■■□□□ 1.67
SMIM11A-204ENST00000474455 CHD1LQ86WJ1 897 aa25.45■■□□□ 1.67
SMIM11A-204ENST00000474455 CHMP5Q9NZZ3 219 aa25.45■■□□□ 1.67
SMIM11A-204ENST00000474455 POLRMTO00411 1230 aaKnown RBP25.45■■□□□ 1.66
SMIM11A-204ENST00000474455 SERPINB2P05120 415 aa25.45■■□□□ 1.66
SMIM11A-204ENST00000474455 C16orf71Q8IYS4 520 aaPredicted RBP25.45■■□□□ 1.66
SMIM11A-204ENST00000474455 COL4A1P02462 1669 aa25.44■■□□□ 1.66
SMIM11A-204ENST00000474455 NYXQ9GZU5 481 aa25.44■■□□□ 1.66
SMIM11A-204ENST00000474455 TNRC6CQ9HCJ0 1690 aaKnown RBP25.44■■□□□ 1.66
SMIM11A-204ENST00000474455 SPEF2Q9C093 1822 aa25.44■■□□□ 1.66
SMIM11A-204ENST00000474455 PRR5LQ6MZQ0 368 aa25.43■■□□□ 1.66
SMIM11A-204ENST00000474455 NLGN1Q8N2Q7 840 aa25.43■■□□□ 1.66
SMIM11A-204ENST00000474455 ITGA6P23229 1130 aa25.42■■□□□ 1.66
SMIM11A-204ENST00000474455 MCM4P33991 863 aa25.42■■□□□ 1.66
SMIM11A-204ENST00000474455 SLC10A5Q5PT55 438 aa25.42■■□□□ 1.66
SMIM11A-204ENST00000474455 PUS3Q9BZE2 481 aaKnown RBP25.42■■□□□ 1.66
SMIM11A-204ENST00000474455 COPRSQ9NQ92 184 aa25.42■■□□□ 1.66
SMIM11A-204ENST00000474455 SEC31BQ9NQW1 1179 aa25.42■■□□□ 1.66
SMIM11A-204ENST00000474455 NPHP1O15259 732 aa25.41■■□□□ 1.66
SMIM11A-204ENST00000474455 CCDC57Q2TAC2 916 aa25.41■■□□□ 1.66
SMIM11A-204ENST00000474455 IL1RAPL2Q9NP60 686 aa25.41■■□□□ 1.66
SMIM11A-204ENST00000474455 SASH1O94885 1247 aa25.4■■□□□ 1.66
SMIM11A-204ENST00000474455 CNBD1Q8NA66 436 aa25.4■■□□□ 1.66
SMIM11A-204ENST00000474455 OTUD7AQ8TE49 926 aaPredicted RBP25.4■■□□□ 1.66
SMIM11A-204ENST00000474455 MMP10P09238 476 aa25.4■■□□□ 1.66
SMIM11A-204ENST00000474455 IFIT5Q13325 482 aaKnown RBP25.4■■□□□ 1.66
SMIM11A-204ENST00000474455 LRRC24Q50LG9 513 aa25.4■■□□□ 1.66
SMIM11A-204ENST00000474455 RHPN1Q8TCX5 695 aa25.4■■□□□ 1.66
SMIM11A-204ENST00000474455 OS9Q13438 667 aaPredicted RBP25.39■■□□□ 1.66
SMIM11A-204ENST00000474455 LRRCC1Q9C099 1032 aa25.39■■□□□ 1.66
SMIM11A-204ENST00000474455 G3BP1Q13283 466 aaKnown RBP eCLIP25.38■■□□□ 1.65
SMIM11A-204ENST00000474455 GOLGB1Q14789 3259 aaKnown RBP25.38■■□□□ 1.65
SMIM11A-204ENST00000474455 ANKRD31Q8N7Z5 1873 aa25.38■■□□□ 1.65
SMIM11A-204ENST00000474455 FSD2A1L4K1 749 aa25.38■■□□□ 1.65
SMIM11A-204ENST00000474455 NRXN2Q9P2S2 1712 aa25.38■■□□□ 1.65
SMIM11A-204ENST00000474455 ATG9AQ7Z3C6 839 aa25.37■■□□□ 1.65
SMIM11A-204ENST00000474455 RAB11FIP3O75154 756 aa25.36■■□□□ 1.65
SMIM11A-204ENST00000474455 ANKRD18BA2A2Z9 1011 aa25.36■■□□□ 1.65
SMIM11A-204ENST00000474455 GOLGA6L3A6NEY3 463 aa25.36■■□□□ 1.65
SMIM11A-204ENST00000474455 HSCBQ8IWL3 235 aa25.36■■□□□ 1.65
SMIM11A-204ENST00000474455 NLRP3Q96P20 1036 aa25.36■■□□□ 1.65
SMIM11A-204ENST00000474455 SF3B3Q15393 1217 aaKnown RBP25.35■■□□□ 1.65
SMIM11A-204ENST00000474455 CCDC152Q4G0S7 254 aa25.35■■□□□ 1.65
SMIM11A-204ENST00000474455 R3HDM1Q15032 1099 aaKnown RBP25.34■■□□□ 1.65
SMIM11A-204ENST00000474455 SNX21Q969T3 373 aa25.34■■□□□ 1.65
SMIM11A-204ENST00000474455 KIF1BPQ96EK5 621 aa25.34■■□□□ 1.65
SMIM11A-204ENST00000474455 ISY1Q9ULR0 285 aaKnown RBP25.34■■□□□ 1.65
SMIM11A-204ENST00000474455 MFAP1P55081 439 aaKnown RBP25.34■■□□□ 1.65
SMIM11A-204ENST00000474455 HSP90AB4PQ58FF6 505 aa25.34■■□□□ 1.65
SMIM11A-204ENST00000474455 TAF7LQ5H9L4 462 aa25.34■■□□□ 1.65
SMIM11A-204ENST00000474455 DDX11L8A8MPP1 907 aa25.33■■□□□ 1.65
SMIM11A-204ENST00000474455 RBM25P49756 843 aaKnown RBP25.33■■□□□ 1.65
SMIM11A-204ENST00000474455 TFCP2Q12800 502 aa25.33■■□□□ 1.65
SMIM11A-204ENST00000474455 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.33■■□□□ 1.65
SMIM11A-204ENST00000474455 PARP3Q9Y6F1 533 aa25.33■■□□□ 1.65
SMIM11A-204ENST00000474455 EYA2O00167 538 aa25.32■■□□□ 1.64
SMIM11A-204ENST00000474455 HSP90B1P14625 803 aaKnown RBP25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms