RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 AOC3Q16853 763 aa23.97■■□□□ 1.43
COL7A1-209ENST00000474432 CELF1Q92879 486 aaKnown RBP23.97■■□□□ 1.43
COL7A1-209ENST00000474432 METTL22Q9BUU2 404 aaPredicted RBP23.97■■□□□ 1.43
COL7A1-209ENST00000474432 VPS33BQ9H267 617 aa23.97■■□□□ 1.43
COL7A1-209ENST00000474432 HACL1Q9UJ83 578 aa23.97■■□□□ 1.43
COL7A1-209ENST00000474432 PPIP5K2O43314 1243 aa23.96■■□□□ 1.43
COL7A1-209ENST00000474432 MPNDQ8N594 471 aa23.96■■□□□ 1.43
COL7A1-209ENST00000474432 ZBTB38Q8NAP3 1195 aaPredicted RBP23.96■■□□□ 1.43
COL7A1-209ENST00000474432 EPHX2P34913 555 aa23.95■■□□□ 1.42
COL7A1-209ENST00000474432 EIF6P56537 245 aaKnown RBP23.95■■□□□ 1.42
COL7A1-209ENST00000474432 TWISTNBQ3B726 338 aaPredicted RBP23.95■■□□□ 1.42
COL7A1-209ENST00000474432 G2E3Q7L622 706 aa23.95■■□□□ 1.42
COL7A1-209ENST00000474432 LDHDQ86WU2 507 aa23.95■■□□□ 1.42
COL7A1-209ENST00000474432 JMYQ8N9B5 988 aa23.95■■□□□ 1.42
COL7A1-209ENST00000474432 CCDC191Q8NCU4 936 aa23.95■■□□□ 1.42
COL7A1-209ENST00000474432 DPP8Q6V1X1 898 aaPredicted RBP23.94■■□□□ 1.42
COL7A1-209ENST00000474432 PASKQ96RG2 1323 aa23.93■■□□□ 1.42
COL7A1-209ENST00000474432 FANCIQ9NVI1 1328 aa23.93■■□□□ 1.42
COL7A1-209ENST00000474432 ITGBL1O95965 494 aaPredicted RBP23.93■■□□□ 1.42
COL7A1-209ENST00000474432 PCCAP05165 728 aaPredicted RBP23.93■■□□□ 1.42
COL7A1-209ENST00000474432 IGKV5-2P06315 115 aa23.93■■□□□ 1.42
COL7A1-209ENST00000474432 SCNN1DP51172 638 aa23.93■■□□□ 1.42
COL7A1-209ENST00000474432 KSR2Q6VAB6 950 aa23.93■■□□□ 1.42
COL7A1-209ENST00000474432 TMC4Q7Z404 712 aa23.93■■□□□ 1.42
COL7A1-209ENST00000474432 NIM1KQ8IY84 436 aa23.93■■□□□ 1.42
COL7A1-209ENST00000474432 JARID2Q92833 1246 aaPredicted RBP23.93■■□□□ 1.42
COL7A1-209ENST00000474432 CHMP4AQ9BY43 222 aa23.93■■□□□ 1.42
COL7A1-209ENST00000474432 TMX4Q9H1E5 349 aaPredicted RBP23.93■■□□□ 1.42
COL7A1-209ENST00000474432 MAP3K2Q9Y2U5 619 aa23.93■■□□□ 1.42
COL7A1-209ENST00000474432 SALL2Q9Y467 1007 aaPredicted RBP23.93■■□□□ 1.42
COL7A1-209ENST00000474432 GJA3Q9Y6H8 435 aa23.93■■□□□ 1.42
COL7A1-209ENST00000474432 PI4KAP2A4QPH2 592 aa23.92■■□□□ 1.42
COL7A1-209ENST00000474432 KIAA2012Q0VF49 1180 aa23.92■■□□□ 1.42
COL7A1-209ENST00000474432 WDR63Q8IWG1 891 aa23.92■■□□□ 1.42
COL7A1-209ENST00000474432 PI4KAP1Q8N8J0 262 aa23.92■■□□□ 1.42
COL7A1-209ENST00000474432 SUPT20HQ8NEM7 779 aa23.92■■□□□ 1.42
COL7A1-209ENST00000474432 SPINK5Q9NQ38 1064 aaPredicted RBP23.92■■□□□ 1.42
COL7A1-209ENST00000474432 DDX58O95786 925 aaKnown RBP23.91■■□□□ 1.42
COL7A1-209ENST00000474432 CXCL9Q07325 125 aa23.91■■□□□ 1.42
COL7A1-209ENST00000474432 EAPPQ56P03 285 aaPredicted RBP23.91■■□□□ 1.42
COL7A1-209ENST00000474432 CWC25Q9NXE8 425 aaPredicted RBP23.91■■□□□ 1.42
COL7A1-209ENST00000474432 EPS15P42566 896 aa23.9■■□□□ 1.42
COL7A1-209ENST00000474432 SEC31BQ9NQW1 1179 aa23.9■■□□□ 1.42
COL7A1-209ENST00000474432 ZNRF3Q9ULT6 936 aa23.9■■□□□ 1.42
COL7A1-209ENST00000474432 VAMP4O75379 141 aa23.89■■□□□ 1.41
COL7A1-209ENST00000474432 SLC4A2P04920 1241 aa23.89■■□□□ 1.41
COL7A1-209ENST00000474432 CACNA1FO60840 1977 aa23.89■■□□□ 1.41
COL7A1-209ENST00000474432 RPS8P62241 208 aaKnown RBP23.88■■□□□ 1.41
COL7A1-209ENST00000474432 GPSM2P81274 684 aa23.88■■□□□ 1.41
COL7A1-209ENST00000474432 PNMA8AQ86V59 439 aaPredicted RBP23.88■■□□□ 1.41
COL7A1-209ENST00000474432 STK31Q9BXU1 1019 aa23.88■■□□□ 1.41
COL7A1-209ENST00000474432 YDJCA8MPS7 323 aa23.87■■□□□ 1.41
COL7A1-209ENST00000474432 PDE8AO60658 829 aa23.87■■□□□ 1.41
COL7A1-209ENST00000474432 FAM9BQ8IZU0 186 aa23.87■■□□□ 1.41
COL7A1-209ENST00000474432 POLLQ9UGP5 575 aa23.87■■□□□ 1.41
COL7A1-209ENST00000474432 CDHR2Q9BYE9 1310 aa23.86■■□□□ 1.41
COL7A1-209ENST00000474432 EXOSC9Q06265 439 aaKnown RBP23.86■■□□□ 1.41
COL7A1-209ENST00000474432 CREBZFQ9NS37 354 aa23.86■■□□□ 1.41
COL7A1-209ENST00000474432 NSFL1CQ9UNZ2 370 aaKnown RBP23.86■■□□□ 1.41
COL7A1-209ENST00000474432 CWF19L2Q2TBE0 894 aaKnown RBP23.85■■□□□ 1.41
COL7A1-209ENST00000474432 MAP1SQ66K74 1059 aaPredicted RBP23.85■■□□□ 1.41
COL7A1-209ENST00000474432 GPRC5DQ9NZD1 345 aa23.85■■□□□ 1.41
COL7A1-209ENST00000474432 CLEC11AQ9Y240 323 aa23.85■■□□□ 1.41
COL7A1-209ENST00000474432 PCNTO95613 3336 aa23.84■■□□□ 1.41
COL7A1-209ENST00000474432 NEURL1BA8MQ27 555 aa23.84■■□□□ 1.41
COL7A1-209ENST00000474432 FLIIQ13045 1269 aa23.84■■□□□ 1.41
COL7A1-209ENST00000474432 CNTROBQ8N137 903 aa23.84■■□□□ 1.41
COL7A1-209ENST00000474432 MYH3P11055 1940 aa23.84■■□□□ 1.41
COL7A1-209ENST00000474432 RAD17O75943 681 aa23.83■■□□□ 1.41
COL7A1-209ENST00000474432 LMOD1P29536 600 aaPredicted RBP23.83■■□□□ 1.41
COL7A1-209ENST00000474432 CCDC85AQ96PX6 553 aaPredicted RBP23.83■■□□□ 1.41
COL7A1-209ENST00000474432 H7C1W4 665 aa23.82■■□□□ 1.4
COL7A1-209ENST00000474432 HSP90B1P14625 803 aaKnown RBP23.82■■□□□ 1.4
COL7A1-209ENST00000474432 GMPSP49915 693 aaPredicted RBP23.82■■□□□ 1.4
COL7A1-209ENST00000474432 WASHC4Q2M389 1173 aa23.82■■□□□ 1.4
COL7A1-209ENST00000474432 CCDC152Q4G0S7 254 aa23.82■■□□□ 1.4
COL7A1-209ENST00000474432 CIAPIN1Q6FI81 312 aa23.82■■□□□ 1.4
COL7A1-209ENST00000474432 TBC1D16Q8TBP0 767 aa23.82■■□□□ 1.4
COL7A1-209ENST00000474432 GPR101Q96P66 508 aaPredicted RBP23.82■■□□□ 1.4
COL7A1-209ENST00000474432 PODXL2Q9NZ53 605 aa23.82■■□□□ 1.4
COL7A1-209ENST00000474432 ZNF521Q96K83 1311 aa23.82■■□□□ 1.4
COL7A1-209ENST00000474432 USP50Q70EL3 339 aaPredicted RBP23.81■■□□□ 1.4
COL7A1-209ENST00000474432 TTLL11Q8NHH1 800 aa23.81■■□□□ 1.4
COL7A1-209ENST00000474432 SCN9AQ15858 1988 aa23.8■■□□□ 1.4
COL7A1-209ENST00000474432 RIMBP2O15034 1052 aa23.8■■□□□ 1.4
COL7A1-209ENST00000474432 CASP7P55210 303 aa23.8■■□□□ 1.4
COL7A1-209ENST00000474432 CTSWP56202 376 aa23.8■■□□□ 1.4
COL7A1-209ENST00000474432 NEXNQ0ZGT2 675 aa23.8■■□□□ 1.4
COL7A1-209ENST00000474432 C6orf229H3BNL8 230 aa23.79■■□□□ 1.4
COL7A1-209ENST00000474432 FMR1Q06787 632 aaKnown RBP eCLIP23.79■■□□□ 1.4
COL7A1-209ENST00000474432 DBNDD1Q9H9R9 158 aa23.79■■□□□ 1.4
COL7A1-209ENST00000474432 KCNQ5Q9NR82 932 aa23.79■■□□□ 1.4
COL7A1-209ENST00000474432 ADARB2Q9NS39 739 aaKnown RBP23.79■■□□□ 1.4
COL7A1-209ENST00000474432 MKRN1Q9UHC7 482 aaKnown RBP23.79■■□□□ 1.4
COL7A1-209ENST00000474432 SHTN1A0MZ66 631 aa23.78■■□□□ 1.4
COL7A1-209ENST00000474432 GCKRQ14397 625 aa23.78■■□□□ 1.4
COL7A1-209ENST00000474432 TNIP1Q15025 636 aa23.78■■□□□ 1.4
COL7A1-209ENST00000474432 DNAAF4Q8WXU2 420 aa23.78■■□□□ 1.4
COL7A1-209ENST00000474432 RTL9Q8NET4 1388 aa23.78■■□□□ 1.4
COL7A1-209ENST00000474432 SPEF2Q9C093 1822 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms