RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 RTL5Q5HYW3 569 aaPredicted RBP13.51□□□□□ -0.25
COL4A1-203ENST00000474391 TMC4Q7Z404 712 aa13.51□□□□□ -0.25
COL4A1-203ENST00000474391 C16orf71Q8IYS4 520 aaPredicted RBP13.51□□□□□ -0.25
COL4A1-203ENST00000474391 RTFDC1Q9BY42 306 aaPredicted RBP13.51□□□□□ -0.25
COL4A1-203ENST00000474391 CEP350Q5VT06 3117 aa13.5□□□□□ -0.25
COL4A1-203ENST00000474391 COL4A5P29400 1685 aa13.5□□□□□ -0.25
COL4A1-203ENST00000474391 CDHR2Q9BYE9 1310 aa13.5□□□□□ -0.25
COL4A1-203ENST00000474391 FSTL1Q12841 308 aa13.5□□□□□ -0.25
COL4A1-203ENST00000474391 L3MBTL3Q96JM7 780 aaPredicted RBP13.5□□□□□ -0.25
COL4A1-203ENST00000474391 TMX4Q9H1E5 349 aaPredicted RBP13.5□□□□□ -0.25
COL4A1-203ENST00000474391 VPS33BQ9H267 617 aa13.5□□□□□ -0.25
COL4A1-203ENST00000474391 LRRC37AA6NMS7 1700 aa13.5□□□□□ -0.25
COL4A1-203ENST00000474391 ZNF541Q9H0D2 1346 aa13.49□□□□□ -0.25
COL4A1-203ENST00000474391 NEXNQ0ZGT2 675 aa13.49□□□□□ -0.25
COL4A1-203ENST00000474391 JDP2Q8WYK2 163 aa13.49□□□□□ -0.25
COL4A1-203ENST00000474391 COL4A1P02462 1669 aa13.48□□□□□ -0.25
COL4A1-203ENST00000474391 NEURL1BA8MQ27 555 aa13.48□□□□□ -0.25
COL4A1-203ENST00000474391 PDE8AO60658 829 aa13.48□□□□□ -0.25
COL4A1-203ENST00000474391 MPNDQ8N594 471 aa13.48□□□□□ -0.25
COL4A1-203ENST00000474391 SUPT20HQ8NEM7 779 aa13.48□□□□□ -0.25
COL4A1-203ENST00000474391 CELF1Q92879 486 aaKnown RBP13.48□□□□□ -0.25
COL4A1-203ENST00000474391 CACNA1FO60840 1977 aa13.48□□□□□ -0.25
COL4A1-203ENST00000474391 DUOX1Q9NRD9 1551 aa13.47□□□□□ -0.25
COL4A1-203ENST00000474391 H7C1W4 665 aa13.47□□□□□ -0.25
COL4A1-203ENST00000474391 FKBP5Q13451 457 aaPredicted RBP13.47□□□□□ -0.25
COL4A1-203ENST00000474391 CWF19L2Q2TBE0 894 aaKnown RBP13.47□□□□□ -0.25
COL4A1-203ENST00000474391 DPP8Q6V1X1 898 aaPredicted RBP13.47□□□□□ -0.25
COL4A1-203ENST00000474391 GPC2Q8N158 579 aa13.47□□□□□ -0.25
COL4A1-203ENST00000474391 LARGE2Q8N3Y3 721 aa13.47□□□□□ -0.25
COL4A1-203ENST00000474391 SMC1BQ8NDV3 1235 aa13.47□□□□□ -0.25
COL4A1-203ENST00000474391 DNAAF4Q8WXU2 420 aa13.47□□□□□ -0.25
COL4A1-203ENST00000474391 TAF1P21675 1872 aa13.46□□□□□ -0.25
COL4A1-203ENST00000474391 IQCA1LA6NCM1 817 aa13.46□□□□□ -0.25
COL4A1-203ENST00000474391 E9PSI1 815 aa13.46□□□□□ -0.25
COL4A1-203ENST00000474391 RPS8P62241 208 aaKnown RBP13.46□□□□□ -0.25
COL4A1-203ENST00000474391 GCKRQ14397 625 aa13.46□□□□□ -0.25
COL4A1-203ENST00000474391 CCDC152Q4G0S7 254 aa13.46□□□□□ -0.25
COL4A1-203ENST00000474391 LINS1Q8NG48 757 aa13.46□□□□□ -0.25
COL4A1-203ENST00000474391 JARID2Q92833 1246 aaPredicted RBP13.46□□□□□ -0.25
COL4A1-203ENST00000474391 PPIP5K2O43314 1243 aa13.45□□□□□ -0.26
COL4A1-203ENST00000474391 APLP1P51693 650 aa13.45□□□□□ -0.26
COL4A1-203ENST00000474391 SLFN5Q08AF3 891 aa13.45□□□□□ -0.26
COL4A1-203ENST00000474391 KIAA2012Q0VF49 1180 aa13.45□□□□□ -0.26
COL4A1-203ENST00000474391 AOC3Q16853 763 aa13.45□□□□□ -0.26
COL4A1-203ENST00000474391 SEC31BQ9NQW1 1179 aa13.45□□□□□ -0.26
COL4A1-203ENST00000474391 SCN4AP35499 1836 aa13.45□□□□□ -0.26
COL4A1-203ENST00000474391 RTL9Q8NET4 1388 aa13.45□□□□□ -0.26
COL4A1-203ENST00000474391 LTBP1Q14766 1721 aa13.44□□□□□ -0.26
COL4A1-203ENST00000474391 CASP7P55210 303 aa13.44□□□□□ -0.26
COL4A1-203ENST00000474391 CTSWP56202 376 aa13.44□□□□□ -0.26
COL4A1-203ENST00000474391 EIF6P56537 245 aaKnown RBP13.44□□□□□ -0.26
COL4A1-203ENST00000474391 NIM1KQ8IY84 436 aa13.44□□□□□ -0.26
COL4A1-203ENST00000474391 TRMT2AQ8IZ69 625 aaKnown RBP13.44□□□□□ -0.26
COL4A1-203ENST00000474391 TTLL11Q8NHH1 800 aa13.44□□□□□ -0.26
COL4A1-203ENST00000474391 PLA2G12BQ9BX93 195 aa13.44□□□□□ -0.26
COL4A1-203ENST00000474391 TAF1DQ9H5J8 278 aaPredicted RBP13.44□□□□□ -0.26
COL4A1-203ENST00000474391 GPSM2P81274 684 aa13.43□□□□□ -0.26
COL4A1-203ENST00000474391 BEND3Q5T5X7 828 aa13.43□□□□□ -0.26
COL4A1-203ENST00000474391 UBE3BQ7Z3V4 1068 aa13.43□□□□□ -0.26
COL4A1-203ENST00000474391 PODXL2Q9NZ53 605 aa13.43□□□□□ -0.26
COL4A1-203ENST00000474391 HACL1Q9UJ83 578 aa13.43□□□□□ -0.26
COL4A1-203ENST00000474391 ZNRF3Q9ULT6 936 aa13.43□□□□□ -0.26
COL4A1-203ENST00000474391 NSFL1CQ9UNZ2 370 aaKnown RBP13.43□□□□□ -0.26
COL4A1-203ENST00000474391 F6X3S4 739 aa13.42□□□□□ -0.26
COL4A1-203ENST00000474391 POTEIP0CG38 1075 aa13.42□□□□□ -0.26
COL4A1-203ENST00000474391 POTEJP0CG39 1038 aa13.42□□□□□ -0.26
COL4A1-203ENST00000474391 POLLQ9UGP5 575 aa13.42□□□□□ -0.26
COL4A1-203ENST00000474391 ADAMTSL1Q8N6G6 1762 aa13.41□□□□□ -0.26
COL4A1-203ENST00000474391 CSF1RP07333 972 aa13.41□□□□□ -0.26
COL4A1-203ENST00000474391 EPHX2P34913 555 aa13.41□□□□□ -0.26
COL4A1-203ENST00000474391 SCNN1DP51172 638 aa13.41□□□□□ -0.26
COL4A1-203ENST00000474391 CXCL9Q07325 125 aa13.41□□□□□ -0.26
COL4A1-203ENST00000474391 WASHC4Q2M389 1173 aa13.41□□□□□ -0.26
COL4A1-203ENST00000474391 CHADLQ6NUI6 762 aa13.41□□□□□ -0.26
COL4A1-203ENST00000474391 LDHDQ86WU2 507 aa13.41□□□□□ -0.26
COL4A1-203ENST00000474391 TBC1D16Q8TBP0 767 aa13.41□□□□□ -0.26
COL4A1-203ENST00000474391 CDCA7LQ96GN5 454 aa13.41□□□□□ -0.26
COL4A1-203ENST00000474391 CCDC85AQ96PX6 553 aaPredicted RBP13.41□□□□□ -0.26
COL4A1-203ENST00000474391 CDC5LQ99459 802 aaKnown RBP13.41□□□□□ -0.26
COL4A1-203ENST00000474391 GREM2Q9H772 168 aa13.41□□□□□ -0.26
COL4A1-203ENST00000474391 GJA3Q9Y6H8 435 aa13.41□□□□□ -0.26
COL4A1-203ENST00000474391 PNMA8AQ86V59 439 aaPredicted RBP13.4□□□□□ -0.26
COL4A1-203ENST00000474391 ANKRD18AQ8IVF6 992 aa13.4□□□□□ -0.26
COL4A1-203ENST00000474391 MRPL50Q8N5N7 158 aaKnown RBP13.4□□□□□ -0.26
COL4A1-203ENST00000474391 DNAJC5GQ8N7S2 189 aa13.4□□□□□ -0.26
COL4A1-203ENST00000474391 MYH3P11055 1940 aa13.39□□□□□ -0.27
COL4A1-203ENST00000474391 YDJCA8MPS7 323 aa13.39□□□□□ -0.27
COL4A1-203ENST00000474391 C6orf229H3BNL8 230 aa13.39□□□□□ -0.27
COL4A1-203ENST00000474391 DIEXFQ68CQ4 756 aaKnown RBP13.39□□□□□ -0.27
COL4A1-203ENST00000474391 EYA3Q99504 573 aa13.39□□□□□ -0.27
COL4A1-203ENST00000474391 BSDC1Q9NW68 430 aaPredicted RBP13.39□□□□□ -0.27
COL4A1-203ENST00000474391 ALDH1L1O75891 902 aa13.38□□□□□ -0.27
COL4A1-203ENST00000474391 ALDH1L2Q3SY69 923 aa13.38□□□□□ -0.27
COL4A1-203ENST00000474391 CIAPIN1Q6FI81 312 aa13.38□□□□□ -0.27
COL4A1-203ENST00000474391 MIER1Q8N108 512 aa13.38□□□□□ -0.27
COL4A1-203ENST00000474391 SSH1Q8WYL5 1049 aa13.38□□□□□ -0.27
COL4A1-203ENST00000474391 GPRC5DQ9NZD1 345 aa13.38□□□□□ -0.27
COL4A1-203ENST00000474391 PTPRCP08575 1304 aa13.38□□□□□ -0.27
COL4A1-203ENST00000474391 XDHP47989 1333 aa13.38□□□□□ -0.27
COL4A1-203ENST00000474391 GRM8O00222 908 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms