RNA–Protein interactions for RNA: ENST00000474088.1

PKD1-211, Transcript of polycystin 1, transient receptor potential channel interacting, human

TSL 5

Gene PKD1, Length 923 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PKD1-211	ENST00000474088	ZNF853	P0CG23	659 aa		32.22	■■■□□ 2.75
PKD1-211	ENST00000474088	VEGFB	P49765	207 aa		32.22	■■■□□ 2.75
PKD1-211	ENST00000474088	CXCL9	Q07325	125 aa		32.22	■■■□□ 2.75
PKD1-211	ENST00000474088	USP50	Q70EL3	339 aa	Predicted RBP	32.22	■■■□□ 2.75
PKD1-211	ENST00000474088	ATP5J2-PTCD1	G3V325	749 aa		32.21	■■■□□ 2.75
PKD1-211	ENST00000474088	APAF1	O14727	1248 aa		32.2	■■■□□ 2.75
PKD1-211	ENST00000474088	KIAA2012	Q0VF49	1180 aa		32.2	■■■□□ 2.75
PKD1-211	ENST00000474088	TMC4	Q7Z404	712 aa		32.2	■■■□□ 2.75
PKD1-211	ENST00000474088	FAM89A	Q96GI7	184 aa		32.2	■■■□□ 2.75
PKD1-211	ENST00000474088	PCNT	O95613	3336 aa		32.19	■■■□□ 2.74
PKD1-211	ENST00000474088	DEFB115	Q30KQ5	88 aa		32.18	■■■□□ 2.74
PKD1-211	ENST00000474088	GPRC5D	Q9NZD1	345 aa		32.18	■■■□□ 2.74
PKD1-211	ENST00000474088	RASSF10	A6NK89	507 aa		32.17	■■■□□ 2.74
PKD1-211	ENST00000474088	TRIM28	Q13263	835 aa	Known RBP	32.17	■■■□□ 2.74
PKD1-211	ENST00000474088	SF3B3	Q15393	1217 aa	Known RBP	32.17	■■■□□ 2.74
PKD1-211	ENST00000474088	IFT57	Q9NWB7	429 aa		32.17	■■■□□ 2.74
PKD1-211	ENST00000474088	GNAI1	P63096	354 aa		32.16	■■■□□ 2.74
PKD1-211	ENST00000474088	ADARB2	Q9NS39	739 aa	Known RBP	32.16	■■■□□ 2.74
PKD1-211	ENST00000474088	CALD1	Q05682	793 aa	Known RBP	32.15	■■■□□ 2.74
PKD1-211	ENST00000474088	CIAPIN1	Q6FI81	312 aa		32.15	■■■□□ 2.74
PKD1-211	ENST00000474088	DDX60	Q8IY21	1712 aa	Known RBP	32.14	■■■□□ 2.74
PKD1-211	ENST00000474088	TAF1	P21675	1872 aa		32.14	■■■□□ 2.74
PKD1-211	ENST00000474088	ABT1	Q9ULW3	272 aa	Known RBP	32.14	■■■□□ 2.74
PKD1-211	ENST00000474088	ELL2	O00472	640 aa	Predicted RBP	32.13	■■■□□ 2.73
PKD1-211	ENST00000474088	FOXN1	O15353	648 aa		32.13	■■■□□ 2.73
PKD1-211	ENST00000474088	GMPS	P49915	693 aa	Predicted RBP	32.13	■■■□□ 2.73
PKD1-211	ENST00000474088	FMR1	Q06787	632 aa	Known RBP eCLIP	32.13	■■■□□ 2.73
PKD1-211	ENST00000474088	RTL5	Q5HYW3	569 aa	Predicted RBP	32.13	■■■□□ 2.73
PKD1-211	ENST00000474088	RIC3	Q7Z5B4	369 aa		32.13	■■■□□ 2.73
PKD1-211	ENST00000474088	CELF1	Q92879	486 aa	Known RBP	32.13	■■■□□ 2.73
PKD1-211	ENST00000474088	PHAX	Q9H814	394 aa	Known RBP	32.13	■■■□□ 2.73
PKD1-211	ENST00000474088	RAD17	O75943	681 aa		32.12	■■■□□ 2.73
PKD1-211	ENST00000474088	TNIP1	Q15025	636 aa		32.12	■■■□□ 2.73
PKD1-211	ENST00000474088	IRS4	O14654	1257 aa	Predicted RBP	32.11	■■■□□ 2.73
PKD1-211	ENST00000474088	CAPN15	O75808	1086 aa		32.11	■■■□□ 2.73
PKD1-211	ENST00000474088	GOLGA2	Q08379	1002 aa		32.1	■■■□□ 2.73
PKD1-211	ENST00000474088	NSFL1C	Q9UNZ2	370 aa	Known RBP	32.1	■■■□□ 2.73
PKD1-211	ENST00000474088	YDJC	A8MPS7	323 aa		32.09	■■■□□ 2.73
PKD1-211	ENST00000474088	AIDA	Q96BJ3	306 aa		32.09	■■■□□ 2.73
PKD1-211	ENST00000474088	BCL2L13	Q9BXK5	485 aa		32.09	■■■□□ 2.73
PKD1-211	ENST00000474088	WBP1L	Q9NX94	342 aa		32.09	■■■□□ 2.73
PKD1-211	ENST00000474088	DUOX1	Q9NRD9	1551 aa		32.09	■■■□□ 2.73
PKD1-211	ENST00000474088	CDHR2	Q9BYE9	1310 aa		32.08	■■■□□ 2.73
PKD1-211	ENST00000474088	WDR33	Q9C0J8	1336 aa	Known RBP	32.08	■■■□□ 2.73
PKD1-211	ENST00000474088	TRAF5	O00463	557 aa		32.08	■■■□□ 2.73
PKD1-211	ENST00000474088	WASHC4	Q2M389	1173 aa		32.08	■■■□□ 2.73
PKD1-211	ENST00000474088	C8orf58	Q8NAV2	365 aa		32.08	■■■□□ 2.73
PKD1-211	ENST00000474088	LRRC37A	A6NMS7	1700 aa		32.08	■■■□□ 2.73
PKD1-211	ENST00000474088	CST9	Q5W186	159 aa		32.07	■■■□□ 2.72
PKD1-211	ENST00000474088	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	32.07	■■■□□ 2.72
PKD1-211	ENST00000474088	CTCF	P49711	727 aa	Predicted RBP	32.06	■■■□□ 2.72
PKD1-211	ENST00000474088	PRDM10	Q9NQV6	1147 aa		32.06	■■■□□ 2.72
PKD1-211	ENST00000474088	PGAP2	Q9UHJ9	254 aa		32.06	■■■□□ 2.72
PKD1-211	ENST00000474088	RPS8	P62241	208 aa	Known RBP	32.05	■■■□□ 2.72
PKD1-211	ENST00000474088	GPSM2	P81274	684 aa		32.05	■■■□□ 2.72
PKD1-211	ENST00000474088	MYD88	Q99836	296 aa		32.05	■■■□□ 2.72
PKD1-211	ENST00000474088	POLL	Q9UGP5	575 aa		32.05	■■■□□ 2.72
PKD1-211	ENST00000474088	CNOT7	Q9UIV1	285 aa	Known RBP	32.05	■■■□□ 2.72
PKD1-211	ENST00000474088	C6orf229	H3BNL8	230 aa		32.03	■■■□□ 2.72
PKD1-211	ENST00000474088	HSP90B1	P14625	803 aa	Known RBP	32.03	■■■□□ 2.72
PKD1-211	ENST00000474088	HIRA	P54198	1017 aa	Predicted RBP	32.03	■■■□□ 2.72
PKD1-211	ENST00000474088	ZC3H15	Q8WU90	426 aa	Known RBP	32.03	■■■□□ 2.72
PKD1-211	ENST00000474088	CHMP4A	Q9BY43	222 aa		32.03	■■■□□ 2.72
PKD1-211	ENST00000474088	COL4A1	P02462	1669 aa		32.02	■■■□□ 2.72
PKD1-211	ENST00000474088	RIMBP2	O15034	1052 aa		32.02	■■■□□ 2.72
PKD1-211	ENST00000474088	CCDC30	Q5VVM6	783 aa		32.02	■■■□□ 2.72
PKD1-211	ENST00000474088	CCDC191	Q8NCU4	936 aa		32.02	■■■□□ 2.72
PKD1-211	ENST00000474088	DBNDD1	Q9H9R9	158 aa		32.02	■■■□□ 2.72
PKD1-211	ENST00000474088	MAP2K1	Q02750	393 aa	Predicted RBP	32.01	■■■□□ 2.71
PKD1-211	ENST00000474088	TLL2	Q9Y6L7	1015 aa		32.01	■■■□□ 2.71
PKD1-211	ENST00000474088		H7C1D1	291 aa		32	■■■□□ 2.71
PKD1-211	ENST00000474088	PCCA	P05165	728 aa	Predicted RBP	32	■■■□□ 2.71
PKD1-211	ENST00000474088	ECE1	P42892	770 aa		32	■■■□□ 2.71
PKD1-211	ENST00000474088	CAPNS2	Q96L46	248 aa		32	■■■□□ 2.71
PKD1-211	ENST00000474088	EYA3	Q99504	573 aa		32	■■■□□ 2.71
PKD1-211	ENST00000474088	GLIS2	Q9BZE0	524 aa	Predicted RBP	32	■■■□□ 2.71
PKD1-211	ENST00000474088	SEC31B	Q9NQW1	1179 aa		32	■■■□□ 2.71
PKD1-211	ENST00000474088	ZBTB12	Q9Y330	459 aa	Predicted RBP	32	■■■□□ 2.71
PKD1-211	ENST00000474088	TRPM7	Q96QT4	1865 aa		31.99	■■■□□ 2.71
PKD1-211	ENST00000474088	SHTN1	A0MZ66	631 aa		31.99	■■■□□ 2.71
PKD1-211	ENST00000474088	PSMD14	O00487	310 aa		31.99	■■■□□ 2.71
PKD1-211	ENST00000474088	DDX58	O95786	925 aa	Known RBP	31.99	■■■□□ 2.71
PKD1-211	ENST00000474088	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	31.99	■■■□□ 2.71
PKD1-211	ENST00000474088	TSPYL6	Q8N831	410 aa		31.99	■■■□□ 2.71
PKD1-211	ENST00000474088	TBC1D16	Q8TBP0	767 aa		31.99	■■■□□ 2.71
PKD1-211	ENST00000474088	TRPM4	Q8TD43	1214 aa		31.99	■■■□□ 2.71
PKD1-211	ENST00000474088	DPF2	Q92785	391 aa		31.99	■■■□□ 2.71
PKD1-211	ENST00000474088	METTL22	Q9BUU2	404 aa	Predicted RBP	31.99	■■■□□ 2.71
PKD1-211	ENST00000474088	CCDC184	Q52MB2	194 aa		31.98	■■■□□ 2.71
PKD1-211	ENST00000474088	CYP4F22	Q6NT55	531 aa		31.98	■■■□□ 2.71
PKD1-211	ENST00000474088	MICALL2	Q8IY33	904 aa		31.98	■■■□□ 2.71
PKD1-211	ENST00000474088	CWC25	Q9NXE8	425 aa	Predicted RBP	31.98	■■■□□ 2.71
PKD1-211	ENST00000474088	PDE8A	O60658	829 aa		31.97	■■■□□ 2.71
PKD1-211	ENST00000474088	CELF2	O95319	508 aa	Known RBP	31.97	■■■□□ 2.71
PKD1-211	ENST00000474088	LBX1	P52954	281 aa		31.97	■■■□□ 2.71
PKD1-211	ENST00000474088	JARID2	Q92833	1246 aa	Predicted RBP	31.97	■■■□□ 2.71
PKD1-211	ENST00000474088	ECE2	O60344	883 aa		31.96	■■■□□ 2.71
PKD1-211	ENST00000474088	DOK7	Q18PE1	504 aa		31.96	■■■□□ 2.71
PKD1-211	ENST00000474088	CCDC152	Q4G0S7	254 aa		31.96	■■■□□ 2.71
PKD1-211	ENST00000474088	CDC37L1	Q7L3B6	337 aa		31.96	■■■□□ 2.71

Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms