RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 WFDC12Q8WWY7 111 aa8.24□□□□□ -1.09
CCDC88A-212ENST00000474059 GPLD1P80108 840 aa8.23□□□□□ -1.09
CCDC88A-212ENST00000474059 MLLT1Q03111 559 aaPredicted RBP8.23□□□□□ -1.09
CCDC88A-212ENST00000474059 KRT25Q7Z3Z0 450 aa8.23□□□□□ -1.09
CCDC88A-212ENST00000474059 KRTAP19-1Q8IUB9 90 aa8.23□□□□□ -1.09
CCDC88A-212ENST00000474059 TTC9Q92623 222 aa8.23□□□□□ -1.09
CCDC88A-212ENST00000474059 PNMA5Q96PV4 448 aa8.23□□□□□ -1.09
CCDC88A-212ENST00000474059 USP21Q9UK80 565 aa8.23□□□□□ -1.09
CCDC88A-212ENST00000474059 OPLAHO14841 1288 aa8.22□□□□□ -1.09
CCDC88A-212ENST00000474059 WEE1P30291 646 aa8.22□□□□□ -1.09
CCDC88A-212ENST00000474059 DGKZQ13574 1117 aa8.22□□□□□ -1.09
CCDC88A-212ENST00000474059 DTWD1Q8N5C7 304 aa8.22□□□□□ -1.09
CCDC88A-212ENST00000474059 USP17L15C9J2P7 530 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 USP17L10C9JJH3 530 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 USP17L13C9JLJ4 530 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 USP17L12C9JPN9 530 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 USP17L11C9JVI0 530 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 USP17L21D6R901 530 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 USP17L18D6R9N7 530 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 USP17L22D6RA61 530 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 USP17L17D6RBQ6 530 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 USP17L19D6RCP7 530 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 USP17L20D6RJB6 530 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 IREB2P48200 963 aaKnown RBP8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 USP17L24Q0WX57 530 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 ANKMY2Q8IV38 441 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 PPP1R12CQ9BZL4 782 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 LRFN2Q9ULH4 789 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 USP20Q9Y2K6 914 aa8.21□□□□□ -1.1
CCDC88A-212ENST00000474059 DLL1O00548 723 aa8.2□□□□□ -1.1
CCDC88A-212ENST00000474059 SASH3O75995 380 aa8.2□□□□□ -1.1
CCDC88A-212ENST00000474059 MICAL2O94851 1124 aa8.2□□□□□ -1.1
CCDC88A-212ENST00000474059 MYO19Q96H55 970 aa8.2□□□□□ -1.1
CCDC88A-212ENST00000474059 HINFPQ9BQA5 517 aa8.2□□□□□ -1.1
CCDC88A-212ENST00000474059 RBM19Q9Y4C8 960 aaKnown RBP8.2□□□□□ -1.1
CCDC88A-212ENST00000474059 FAM196BA6NMK8 535 aa8.19□□□□□ -1.1
CCDC88A-212ENST00000474059 ARSDP51689 593 aa8.19□□□□□ -1.1
CCDC88A-212ENST00000474059 LARP1Q6PKG0 1096 aaKnown RBP8.19□□□□□ -1.1
CCDC88A-212ENST00000474059 PROSER2Q86WR7 435 aaPredicted RBP8.19□□□□□ -1.1
CCDC88A-212ENST00000474059 HFE2Q6ZVN8 426 aa8.18□□□□□ -1.1
CCDC88A-212ENST00000474059 NBPF11Q86T75 865 aa8.18□□□□□ -1.1
CCDC88A-212ENST00000474059 C11orf16Q9NQ32 467 aa8.18□□□□□ -1.1
CCDC88A-212ENST00000474059 EGFRP00533 1210 aa8.17□□□□□ -1.1
CCDC88A-212ENST00000474059 RARAP10276 462 aa8.17□□□□□ -1.1
CCDC88A-212ENST00000474059 EPB42P16452 691 aa8.17□□□□□ -1.1
CCDC88A-212ENST00000474059 NRLP54845 237 aa8.17□□□□□ -1.1
CCDC88A-212ENST00000474059 ELMSAN1Q6PJG2 1045 aa8.17□□□□□ -1.1
CCDC88A-212ENST00000474059 IGF2-ASQ6U949 168 aa8.17□□□□□ -1.1
CCDC88A-212ENST00000474059 WFDC8Q8IUA0 241 aa8.17□□□□□ -1.1
CCDC88A-212ENST00000474059 DZIP1LQ8IYY4 767 aaKnown RBP8.17□□□□□ -1.1
CCDC88A-212ENST00000474059 SMG9Q9H0W8 520 aaKnown RBP8.17□□□□□ -1.1
CCDC88A-212ENST00000474059 RNF112Q9ULX5 631 aa8.17□□□□□ -1.1
CCDC88A-212ENST00000474059 PCSK7Q16549 785 aa8.16□□□□□ -1.1
CCDC88A-212ENST00000474059 PRR23CQ6ZRP0 262 aa8.16□□□□□ -1.1
CCDC88A-212ENST00000474059 KRTAP9-9Q9BYP9 154 aa8.16□□□□□ -1.1
CCDC88A-212ENST00000474059 KRTAP9-4Q9BYQ2 154 aa8.16□□□□□ -1.1
CCDC88A-212ENST00000474059 TLR7Q9NYK1 1049 aaKnown RBP8.16□□□□□ -1.1
CCDC88A-212ENST00000474059 RTCBQ9Y3I0 505 aaKnown RBP8.16□□□□□ -1.1
CCDC88A-212ENST00000474059 KCNMB2Q9Y691 235 aa8.16□□□□□ -1.1
CCDC88A-212ENST00000474059 FOXO3O43524 673 aa8.15□□□□□ -1.1
CCDC88A-212ENST00000474059 ALX3O95076 343 aa8.15□□□□□ -1.1
CCDC88A-212ENST00000474059 C11orf91Q3C1V1 193 aa8.15□□□□□ -1.1
CCDC88A-212ENST00000474059 FAM26DQ5JW98 314 aa8.15□□□□□ -1.1
CCDC88A-212ENST00000474059 J3QW42 95 aa8.14□□□□□ -1.11
CCDC88A-212ENST00000474059 HOXD8P13378 290 aaPredicted RBP8.14□□□□□ -1.11
CCDC88A-212ENST00000474059 Q6ZS46 218 aa8.14□□□□□ -1.11
CCDC88A-212ENST00000474059 TM4SF5O14894 197 aa8.13□□□□□ -1.11
CCDC88A-212ENST00000474059 CFAP70Q5T0N1 1121 aa8.13□□□□□ -1.11
CCDC88A-212ENST00000474059 PLD4Q96BZ4 506 aa8.13□□□□□ -1.11
CCDC88A-212ENST00000474059 F8W735 103 aaPredicted RBP8.12□□□□□ -1.11
CCDC88A-212ENST00000474059 MMP20O60882 483 aa8.12□□□□□ -1.11
CCDC88A-212ENST00000474059 EIF2AK2P19525 551 aaKnown RBP8.12□□□□□ -1.11
CCDC88A-212ENST00000474059 LMOD1P29536 600 aaPredicted RBP8.12□□□□□ -1.11
CCDC88A-212ENST00000474059 TRIP4Q15650 581 aaPredicted RBP8.12□□□□□ -1.11
CCDC88A-212ENST00000474059 COX20Q5RI15 118 aa8.12□□□□□ -1.11
CCDC88A-212ENST00000474059 ADAMTSL4Q6UY14 1074 aa8.12□□□□□ -1.11
CCDC88A-212ENST00000474059 XYLBO75191 536 aa8.11□□□□□ -1.11
CCDC88A-212ENST00000474059 FKBP5Q13451 457 aaPredicted RBP8.11□□□□□ -1.11
CCDC88A-212ENST00000474059 SETDB1Q15047 1291 aa8.11□□□□□ -1.11
CCDC88A-212ENST00000474059 TREML1Q86YW5 311 aa8.11□□□□□ -1.11
CCDC88A-212ENST00000474059 ETFBKMTQ8IXQ9 262 aa8.11□□□□□ -1.11
CCDC88A-212ENST00000474059 TMEM130Q8N3G9 435 aa8.11□□□□□ -1.11
CCDC88A-212ENST00000474059 VRTNQ9H8Y1 702 aa8.11□□□□□ -1.11
CCDC88A-212ENST00000474059 LOC102724428A0A0B4J2F2 783 aa8.1□□□□□ -1.11
CCDC88A-212ENST00000474059 FSTP19883 344 aa8.1□□□□□ -1.11
CCDC88A-212ENST00000474059 SIK1P57059 783 aa8.1□□□□□ -1.11
CCDC88A-212ENST00000474059 RGL4Q8IZJ4 473 aa8.1□□□□□ -1.11
CCDC88A-212ENST00000474059 CALR3Q96L12 384 aaKnown RBP8.1□□□□□ -1.11
CCDC88A-212ENST00000474059 NSUN5Q96P11 429 aaKnown RBP8.1□□□□□ -1.11
CCDC88A-212ENST00000474059 AKTIPQ9H8T0 292 aa8.1□□□□□ -1.11
CCDC88A-212ENST00000474059 SAP130Q9H0E3 1048 aa8.09□□□□□ -1.11
CCDC88A-212ENST00000474059 TRIM33Q9UPN9 1127 aa8.09□□□□□ -1.11
CCDC88A-212ENST00000474059 MED26O95402 600 aa8.08□□□□□ -1.12
CCDC88A-212ENST00000474059 SOX18P35713 384 aa8.08□□□□□ -1.12
CCDC88A-212ENST00000474059 COL13A1Q5TAT6 717 aaPredicted RBP8.08□□□□□ -1.12
CCDC88A-212ENST00000474059 AGGF1Q8N302 714 aaeCLIP8.08□□□□□ -1.12
CCDC88A-212ENST00000474059 A6NJR5 290 aa8.07□□□□□ -1.12
CCDC88A-212ENST00000474059 WISP1O95388 367 aa8.07□□□□□ -1.12
CCDC88A-212ENST00000474059 OCLNQ16625 522 aa8.07□□□□□ -1.12
CCDC88A-212ENST00000474059 GDF6Q6KF10 455 aaPredicted RBP8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms