RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ISCA1Q9BUE6 129 aa20.31■□□□□ 0.84
CCDC88B-205ENST00000472524 ADAMTSL1Q8N6G6 1762 aa20.31■□□□□ 0.84
CCDC88B-205ENST00000472524 FOXN1O15353 648 aa20.3■□□□□ 0.84
CCDC88B-205ENST00000472524 SCNN1DP51172 638 aa20.3■□□□□ 0.84
CCDC88B-205ENST00000472524 CCDC27Q2M243 656 aa20.3■□□□□ 0.84
CCDC88B-205ENST00000472524 WWC1Q8IX03 1113 aa20.3■□□□□ 0.84
CCDC88B-205ENST00000472524 TMX4Q9H1E5 349 aaPredicted RBP20.3■□□□□ 0.84
CCDC88B-205ENST00000472524 EPS15P42566 896 aa20.29■□□□□ 0.84
CCDC88B-205ENST00000472524 RTL5Q5HYW3 569 aaPredicted RBP20.29■□□□□ 0.84
CCDC88B-205ENST00000472524 TSPYL6Q8N831 410 aa20.29■□□□□ 0.84
CCDC88B-205ENST00000472524 FAM89AQ96GI7 184 aa20.29■□□□□ 0.84
CCDC88B-205ENST00000472524 ATP6V0A2Q9Y487 856 aa20.29■□□□□ 0.84
CCDC88B-205ENST00000472524 PPIP5K2O43314 1243 aa20.28■□□□□ 0.84
CCDC88B-205ENST00000472524 LMOD1P29536 600 aaPredicted RBP20.28■□□□□ 0.84
CCDC88B-205ENST00000472524 AOC3Q16853 763 aa20.28■□□□□ 0.84
CCDC88B-205ENST00000472524 CCDC30Q5VVM6 783 aa20.28■□□□□ 0.84
CCDC88B-205ENST00000472524 DDX46Q7L014 1031 aaKnown RBP20.28■□□□□ 0.84
CCDC88B-205ENST00000472524 SALL2Q9Y467 1007 aaPredicted RBP20.28■□□□□ 0.84
CCDC88B-205ENST00000472524 CACNA1FO60840 1977 aa20.28■□□□□ 0.84
CCDC88B-205ENST00000472524 FMR1Q06787 632 aaKnown RBP eCLIP20.27■□□□□ 0.84
CCDC88B-205ENST00000472524 NIM1KQ8IY84 436 aa20.27■□□□□ 0.84
CCDC88B-205ENST00000472524 LTBP1Q14766 1721 aa20.27■□□□□ 0.83
CCDC88B-205ENST00000472524 MYD88Q99836 296 aa20.26■□□□□ 0.83
CCDC88B-205ENST00000472524 LRRC37AA6NMS7 1700 aa20.26■□□□□ 0.83
CCDC88B-205ENST00000472524 RASSF10A6NK89 507 aa20.25■□□□□ 0.83
CCDC88B-205ENST00000472524 BBOX1O75936 387 aa20.25■□□□□ 0.83
CCDC88B-205ENST00000472524 GRAPQ13588 217 aa20.25■□□□□ 0.83
CCDC88B-205ENST00000472524 GRAPLQ8TC17 118 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-205ENST00000472524 CHMP4AQ9BY43 222 aa20.25■□□□□ 0.83
CCDC88B-205ENST00000472524 MYH3P11055 1940 aa20.24■□□□□ 0.83
CCDC88B-205ENST00000472524 TRIM28Q13263 835 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-205ENST00000472524 AIDAQ96BJ3 306 aa20.24■□□□□ 0.83
CCDC88B-205ENST00000472524 RTFDC1Q9BY42 306 aaPredicted RBP20.24■□□□□ 0.83
CCDC88B-205ENST00000472524 ABT1Q9ULW3 272 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-205ENST00000472524 IL16Q14005 1332 aa20.24■□□□□ 0.83
CCDC88B-205ENST00000472524 COL4A1P02462 1669 aa20.23■□□□□ 0.83
CCDC88B-205ENST00000472524 IRS4O14654 1257 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-205ENST00000472524 DDX58O95786 925 aaKnown RBP20.23■□□□□ 0.83
CCDC88B-205ENST00000472524 DEFB115Q30KQ5 88 aa20.23■□□□□ 0.83
CCDC88B-205ENST00000472524 TWISTNBQ3B726 338 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-205ENST00000472524 DPP8Q6V1X1 898 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-205ENST00000472524 SP8Q8IXZ3 490 aa20.23■□□□□ 0.83
CCDC88B-205ENST00000472524 STK31Q9BXU1 1019 aa20.23■□□□□ 0.83
CCDC88B-205ENST00000472524 WBP1LQ9NX94 342 aa20.23■□□□□ 0.83
CCDC88B-205ENST00000472524 TRAF5O00463 557 aa20.22■□□□□ 0.83
CCDC88B-205ENST00000472524 CXCL9Q07325 125 aa20.22■□□□□ 0.83
CCDC88B-205ENST00000472524 USP50Q70EL3 339 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-205ENST00000472524 FAM9BQ8IZU0 186 aa20.22■□□□□ 0.83
CCDC88B-205ENST00000472524 MPNDQ8N594 471 aa20.22■□□□□ 0.83
CCDC88B-205ENST00000472524 VPS33BQ9H267 617 aa20.22■□□□□ 0.83
CCDC88B-205ENST00000472524 ZNRF3Q9ULT6 936 aa20.22■□□□□ 0.83
CCDC88B-205ENST00000472524 CTCFP49711 727 aaPredicted RBP20.21■□□□□ 0.83
CCDC88B-205ENST00000472524 SF3B3Q15393 1217 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-205ENST00000472524 NCBP3Q53F19 620 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-205ENST00000472524 ZBTB38Q8NAP3 1195 aaPredicted RBP20.21■□□□□ 0.83
CCDC88B-205ENST00000472524 SUPT20HQ8NEM7 779 aa20.21■□□□□ 0.83
CCDC88B-205ENST00000472524 METTL22Q9BUU2 404 aaPredicted RBP20.21■□□□□ 0.83
CCDC88B-205ENST00000472524 PRDM10Q9NQV6 1147 aa20.21■□□□□ 0.83
CCDC88B-205ENST00000472524 GPRC5DQ9NZD1 345 aa20.21■□□□□ 0.83
CCDC88B-205ENST00000472524 MAP3K2Q9Y2U5 619 aa20.21■□□□□ 0.83
CCDC88B-205ENST00000472524 WDR33Q9C0J8 1336 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-205ENST00000472524 FANCIQ9NVI1 1328 aa20.21■□□□□ 0.83
CCDC88B-205ENST00000472524 GMPSP49915 693 aaPredicted RBP20.2■□□□□ 0.82
CCDC88B-205ENST00000472524 CCDC191Q8NCU4 936 aa20.2■□□□□ 0.82
CCDC88B-205ENST00000472524 JARID2Q92833 1246 aaPredicted RBP20.2■□□□□ 0.82
CCDC88B-205ENST00000472524 CELF1Q92879 486 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-205ENST00000472524 CWC25Q9NXE8 425 aaPredicted RBP20.2■□□□□ 0.82
CCDC88B-205ENST00000472524 DUOX1Q9NRD9 1551 aa20.2■□□□□ 0.82
CCDC88B-205ENST00000472524 SPEF2Q9C093 1822 aa20.2■□□□□ 0.82
CCDC88B-205ENST00000472524 LBX1P52954 281 aa20.19■□□□□ 0.82
CCDC88B-205ENST00000472524 KIAA2012Q0VF49 1180 aa20.19■□□□□ 0.82
CCDC88B-205ENST00000472524 CST9Q5W186 159 aa20.19■□□□□ 0.82
CCDC88B-205ENST00000472524 ADARB2Q9NS39 739 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-205ENST00000472524 PI4KAP2A4QPH2 592 aa20.18■□□□□ 0.82
CCDC88B-205ENST00000472524 RAD17O75943 681 aa20.18■□□□□ 0.82
CCDC88B-205ENST00000472524 KSR2Q6VAB6 950 aa20.18■□□□□ 0.82
CCDC88B-205ENST00000472524 G2E3Q7L622 706 aa20.18■□□□□ 0.82
CCDC88B-205ENST00000472524 TMC4Q7Z404 712 aa20.18■□□□□ 0.82
CCDC88B-205ENST00000472524 PI4KAP1Q8N8J0 262 aa20.18■□□□□ 0.82
CCDC88B-205ENST00000472524 PCCAP05165 728 aaPredicted RBP20.17■□□□□ 0.82
CCDC88B-205ENST00000472524 WDR63Q8IWG1 891 aa20.17■□□□□ 0.82
CCDC88B-205ENST00000472524 SLC4A2P04920 1241 aa20.16■□□□□ 0.82
CCDC88B-205ENST00000472524 HSPA8P11142 646 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-205ENST00000472524 HSP90B1P14625 803 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-205ENST00000472524 CIAPIN1Q6FI81 312 aa20.16■□□□□ 0.82
CCDC88B-205ENST00000472524 PAXIP1Q6ZW49 1069 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-205ENST00000472524 CAPNS2Q96L46 248 aa20.16■□□□□ 0.82
CCDC88B-205ENST00000472524 YDJCA8MPS7 323 aa20.15■□□□□ 0.82
CCDC88B-205ENST00000472524 NEXNQ0ZGT2 675 aa20.15■□□□□ 0.82
CCDC88B-205ENST00000472524 GRM1Q13255 1194 aa20.15■□□□□ 0.82
CCDC88B-205ENST00000472524 CYP4F22Q6NT55 531 aa20.15■□□□□ 0.82
CCDC88B-205ENST00000472524 CCDC85AQ96PX6 553 aaPredicted RBP20.15■□□□□ 0.82
CCDC88B-205ENST00000472524 SEC31BQ9NQW1 1179 aa20.15■□□□□ 0.82
CCDC88B-205ENST00000472524 SHTN1A0MZ66 631 aa20.14■□□□□ 0.81
CCDC88B-205ENST00000472524 PDE8AO60658 829 aa20.14■□□□□ 0.81
CCDC88B-205ENST00000472524 IGKV5-2P06315 115 aa20.14■□□□□ 0.81
CCDC88B-205ENST00000472524 MAP2K1Q02750 393 aaPredicted RBP20.14■□□□□ 0.81
CCDC88B-205ENST00000472524 EXOSC9Q06265 439 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-205ENST00000472524 NSFL1CQ9UNZ2 370 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-205ENST00000472524 TLL2Q9Y6L7 1015 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms