RNA–Protein interactions for RNA: ENST00000472398.5

TTC3-214, Transcript of tetratricopeptide repeat domain 3, human

TSL 1 (best)

Gene TTC3, Length 2,305 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-214	ENST00000472398	HMMR	O75330	724 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	ATIC	P31939	592 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	TSPAN7	P41732	249 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	CD151	P48509	253 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	DNAJC21	Q5F1R6	531 aa	Known RBP	3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	BRICD5	Q6PL45	260 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	FERMT3	Q86UX7	667 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	RETREG3	Q86VR2	466 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	TAF4B	Q92750	862 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	ARMC5	Q96C12	935 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	DUSP9	Q99956	384 aa	Known RBP	3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	SLC27A5	Q9Y2P5	690 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	MRPS23	Q9Y3D9	190 aa	Known RBP	3.95	□□□□□ -1.78
TTC3-214	ENST00000472398		A6NJY4	79 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	CFAP99	D6REC4	459 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	hCG_1984214	I3L0E3	225 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	USP17L8	P0C7I0	530 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	CDC27	P30260	824 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	SEPT2	Q15019	361 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	ERAP2	Q6P179	960 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	NDUFAF2	Q8N183	169 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	CCDC89	Q8N998	374 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	SLC43A3	Q8NBI5	491 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	TMEM87B	Q96K49	555 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	GJD4	Q96KN9	370 aa	Predicted RBP	3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	RNPC3	Q96LT9	517 aa	Known RBP	3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	GOLGA2P5	Q9HBQ8	144 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	POLG2	Q9UHN1	485 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	TMCC3	Q9ULS5	477 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	MAFB	Q9Y5Q3	323 aa	Predicted RBP	3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	IPO5	O00410	1097 aa	Known RBP	3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	PPFIA3	O75145	1194 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	NR1I2	O75469	434 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	CDKN1C	P49918	316 aa	Predicted RBP	3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	NAP1L1	P55209	391 aa	Known RBP	3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	HMGN5	P82970	282 aa	Known RBP	3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	NFX1	Q12986	1120 aa	Known RBP	3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	VPS72	Q15906	364 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	C16orf54	Q6UWD8	224 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	ANKRD13B	Q86YJ7	626 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	LMNTD2	Q8IXW0	634 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	CLASRP	Q8N2M8	674 aa	Known RBP	3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	SAMD3	Q8N6K7	520 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	LSM14A	Q8ND56	463 aa	Known RBP	3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	PPM1E	Q8WY54	764 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	SERINC2	Q96SA4	455 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	WBP1L	Q9NX94	342 aa		3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	EVL	Q9UI08	416 aa	Predicted RBP	3.94	□□□□□ -1.78
TTC3-214	ENST00000472398	NUTM2B	A6NNL0	878 aa	Predicted RBP	3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	NUTM2E	B1AL46	878 aa	Predicted RBP	3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	RNF40	O75150	1001 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	ECEL1	O95672	775 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	XRCC5	P13010	732 aa	Known RBP	3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	PAX7	P23759	505 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	TRAPPC10	P48553	1259 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	ZNF132	P52740	706 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	INHBE	P58166	350 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	COL19A1	Q14993	1142 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	BRD3	Q15059	726 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	NUTM2D	Q5VT03	806 aa	Predicted RBP	3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	NUTM2A	Q8IVF1	878 aa	Predicted RBP	3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	MYRIP	Q8NFW9	859 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	HELQ	Q8TDG4	1101 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	TAGLN3	Q9UI15	199 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	ACAD8	Q9UKU7	415 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	C11orf95	C9JLR9	678 aa	Predicted RBP	3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	CASQ1	P31415	396 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	TNNT2	P45379	298 aa	Predicted RBP	3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	SEC13	P55735	322 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	VAC14	Q08AM6	782 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	SLC4A8	Q2Y0W8	1093 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	MSS51	Q4VC12	460 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	TAF3	Q5VWG9	929 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	MCF2L2	Q86YR7	1114 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	JAML	Q86YT9	394 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	PRPF38A	Q8NAV1	312 aa	Known RBP	3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	FRS2	Q8WU20	508 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	GOLGA1	Q92805	767 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	TBC1D20	Q96BZ9	403 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	CCDC34	Q96HJ3	373 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	TGIF2	Q9GZN2	237 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	CCSER2	Q9H7U1	834 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	NLRP2	Q9NX02	1062 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	PCDHB3	Q9Y5E6	796 aa		3.93	□□□□□ -1.78
TTC3-214	ENST00000472398	CCDC163	A0A0D9SF12	145 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398		A0A1W2PRQ8	180 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	C6orf229	H3BNL8	230 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	AP1G2	O75843	785 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	RPN1	P04843	607 aa	Known RBP	3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	SKIL	P12757	684 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	HOXC13	P31276	330 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	GEMIN4	P57678	1058 aa	Known RBP	3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	PPP2R5B	Q15173	497 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	NFE2	Q16621	373 aa	Predicted RBP	3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	ESCO1	Q5FWF5	840 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	ACBD5	Q5T8D3	534 aa	Predicted RBP	3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	B4GALNT3	Q6L9W6	998 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	LYPD8	Q6UX82	237 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	UBE2Q1	Q7Z7E8	422 aa		3.92	□□□□□ -1.78

Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms