RNA–Protein interactions for RNA: ENST00000471880.5

SSR4-208, Transcript of signal sequence receptor subunit 4, human

TSL 5

Gene SSR4, Length 785 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSR4-208	ENST00000471880	GRAP	Q13588	217 aa		18.89	■□□□□ 0.61
SSR4-208	ENST00000471880	GRAPL	Q8TC17	118 aa	Predicted RBP	18.89	■□□□□ 0.61
SSR4-208	ENST00000471880	MYH3	P11055	1940 aa		18.89	■□□□□ 0.61
SSR4-208	ENST00000471880	BBOX1	O75936	387 aa		18.88	■□□□□ 0.61
SSR4-208	ENST00000471880	PCCA	P05165	728 aa	Predicted RBP	18.88	■□□□□ 0.61
SSR4-208	ENST00000471880	DNAAF4	Q8WXU2	420 aa		18.88	■□□□□ 0.61
SSR4-208	ENST00000471880	JDP2	Q8WYK2	163 aa		18.88	■□□□□ 0.61
SSR4-208	ENST00000471880	ATP6V0A2	Q9Y487	856 aa		18.88	■□□□□ 0.61
SSR4-208	ENST00000471880	ZNF521	Q96K83	1311 aa		18.88	■□□□□ 0.61
SSR4-208	ENST00000471880	IGKV5-2	P06315	115 aa		18.87	■□□□□ 0.61
SSR4-208	ENST00000471880	DPP8	Q6V1X1	898 aa	Predicted RBP	18.87	■□□□□ 0.61
SSR4-208	ENST00000471880	LARGE2	Q8N3Y3	721 aa		18.87	■□□□□ 0.61
SSR4-208	ENST00000471880	PSMD1	Q99460	953 aa		18.87	■□□□□ 0.61
SSR4-208	ENST00000471880	DUOX1	Q9NRD9	1551 aa		18.87	■□□□□ 0.61
SSR4-208	ENST00000471880	SPEF2	Q9C093	1822 aa		18.86	■□□□□ 0.61
SSR4-208	ENST00000471880	ZNF541	Q9H0D2	1346 aa		18.86	■□□□□ 0.61
SSR4-208	ENST00000471880	NEURL1B	A8MQ27	555 aa		18.86	■□□□□ 0.61
SSR4-208	ENST00000471880		F6X3S4	739 aa		18.86	■□□□□ 0.61
SSR4-208	ENST00000471880	PDE8A	O60658	829 aa		18.86	■□□□□ 0.61
SSR4-208	ENST00000471880	TOMM70	O94826	608 aa		18.86	■□□□□ 0.61
SSR4-208	ENST00000471880	DDN	O94850	711 aa	Predicted RBP	18.86	■□□□□ 0.61
SSR4-208	ENST00000471880	CCDC152	Q4G0S7	254 aa		18.86	■□□□□ 0.61
SSR4-208	ENST00000471880	GRIPAP1	Q4V328	841 aa		18.86	■□□□□ 0.61
SSR4-208	ENST00000471880	CELF1	Q92879	486 aa	Known RBP	18.86	■□□□□ 0.61
SSR4-208	ENST00000471880	CDCA7L	Q96GN5	454 aa		18.86	■□□□□ 0.61
SSR4-208	ENST00000471880	LTBP1	Q14766	1721 aa		18.86	■□□□□ 0.61
SSR4-208	ENST00000471880	PPIP5K2	O43314	1243 aa		18.85	■□□□□ 0.61
SSR4-208	ENST00000471880	VEGFA	P15692	232 aa	Predicted RBP	18.85	■□□□□ 0.61
SSR4-208	ENST00000471880	SF3B3	Q15393	1217 aa	Known RBP	18.85	■□□□□ 0.61
SSR4-208	ENST00000471880	SLC4A10	Q6U841	1118 aa		18.85	■□□□□ 0.61
SSR4-208	ENST00000471880	UBE3B	Q7Z3V4	1068 aa		18.85	■□□□□ 0.61
SSR4-208	ENST00000471880	SP8	Q8IXZ3	490 aa		18.85	■□□□□ 0.61
SSR4-208	ENST00000471880	MPND	Q8N594	471 aa		18.85	■□□□□ 0.61
SSR4-208	ENST00000471880	SCN4A	P35499	1836 aa		18.85	■□□□□ 0.61
SSR4-208	ENST00000471880	NIM1K	Q8IY84	436 aa		18.84	■□□□□ 0.61
SSR4-208	ENST00000471880	SUPT20H	Q8NEM7	779 aa		18.84	■□□□□ 0.61
SSR4-208	ENST00000471880	SEC31B	Q9NQW1	1179 aa		18.84	■□□□□ 0.61
SSR4-208	ENST00000471880	GJA3	Q9Y6H8	435 aa		18.84	■□□□□ 0.61
SSR4-208	ENST00000471880	HSPA6	P17066	643 aa		18.83	■□□□□ 0.6
SSR4-208	ENST00000471880	EIF6	P56537	245 aa	Known RBP	18.83	■□□□□ 0.6
SSR4-208	ENST00000471880	SLFN5	Q08AF3	891 aa		18.83	■□□□□ 0.6
SSR4-208	ENST00000471880	AOC3	Q16853	763 aa		18.83	■□□□□ 0.6
SSR4-208	ENST00000471880	BCL2L13	Q9BXK5	485 aa		18.83	■□□□□ 0.6
SSR4-208	ENST00000471880	NSFL1C	Q9UNZ2	370 aa	Known RBP	18.83	■□□□□ 0.6
SSR4-208	ENST00000471880	CTSW	P56202	376 aa		18.82	■□□□□ 0.6
SSR4-208	ENST00000471880	TMC4	Q7Z404	712 aa		18.82	■□□□□ 0.6
SSR4-208	ENST00000471880	LINS1	Q8NG48	757 aa		18.82	■□□□□ 0.6
SSR4-208	ENST00000471880	RBM46	Q8TBY0	533 aa	Known RBP	18.82	■□□□□ 0.6
SSR4-208	ENST00000471880	CDHR2	Q9BYE9	1310 aa		18.81	■□□□□ 0.6
SSR4-208	ENST00000471880	C6orf229	H3BNL8	230 aa		18.81	■□□□□ 0.6
SSR4-208	ENST00000471880	RPS8	P62241	208 aa	Known RBP	18.81	■□□□□ 0.6
SSR4-208	ENST00000471880	GCKR	Q14397	625 aa		18.81	■□□□□ 0.6
SSR4-208	ENST00000471880	ANKRD18A	Q8IVF6	992 aa		18.8	■□□□□ 0.6
SSR4-208	ENST00000471880	CHMP3	Q9Y3E7	222 aa		18.8	■□□□□ 0.6
SSR4-208	ENST00000471880	ADAMTSL1	Q8N6G6	1762 aa		18.8	■□□□□ 0.6
SSR4-208	ENST00000471880	POTEI	P0CG38	1075 aa		18.79	■□□□□ 0.6
SSR4-208	ENST00000471880	POTEJ	P0CG39	1038 aa		18.79	■□□□□ 0.6
SSR4-208	ENST00000471880	HNRNPU	Q00839	825 aa	Known RBP eCLIP	18.79	■□□□□ 0.6
SSR4-208	ENST00000471880	ANKIB1	Q9P2G1	1089 aa		18.79	■□□□□ 0.6
SSR4-208	ENST00000471880	FZD9	O00144	591 aa		18.78	■□□□□ 0.6
SSR4-208	ENST00000471880	RIMBP2	O15034	1052 aa		18.78	■□□□□ 0.6
SSR4-208	ENST00000471880	GPSM2	P81274	684 aa		18.78	■□□□□ 0.6
SSR4-208	ENST00000471880	HTRA3	P83110	453 aa		18.78	■□□□□ 0.6
SSR4-208	ENST00000471880	EAPP	Q56P03	285 aa	Predicted RBP	18.78	■□□□□ 0.6
SSR4-208	ENST00000471880	CDC5L	Q99459	802 aa	Known RBP	18.78	■□□□□ 0.6
SSR4-208	ENST00000471880	SMC4	Q9NTJ3	1288 aa		18.78	■□□□□ 0.6
SSR4-208	ENST00000471880	C9orf78	Q9NZ63	289 aa	Predicted RBP	18.78	■□□□□ 0.6
SSR4-208	ENST00000471880	SCN9A	Q15858	1988 aa		18.77	■□□□□ 0.6
SSR4-208	ENST00000471880	IQCA1L	A6NCM1	817 aa		18.77	■□□□□ 0.6
SSR4-208	ENST00000471880		G3V3G9	751 aa		18.77	■□□□□ 0.6
SSR4-208	ENST00000471880		H7C1W4	665 aa		18.77	■□□□□ 0.6
SSR4-208	ENST00000471880	DCAF8	Q5TAQ9	597 aa		18.77	■□□□□ 0.6
SSR4-208	ENST00000471880	MRPL50	Q8N5N7	158 aa	Known RBP	18.77	■□□□□ 0.6
SSR4-208	ENST00000471880	SMC1B	Q8NDV3	1235 aa		18.77	■□□□□ 0.6
SSR4-208	ENST00000471880	TTLL11	Q8NHH1	800 aa		18.77	■□□□□ 0.6
SSR4-208	ENST00000471880	SSH1	Q8WYL5	1049 aa		18.77	■□□□□ 0.6
SSR4-208	ENST00000471880	GREM2	Q9H772	168 aa		18.77	■□□□□ 0.6
SSR4-208	ENST00000471880	WASHC4	Q2M389	1173 aa		18.76	■□□□□ 0.59
SSR4-208	ENST00000471880	BEND3	Q5T5X7	828 aa		18.76	■□□□□ 0.59
SSR4-208	ENST00000471880	GPR101	Q96P66	508 aa	Predicted RBP	18.76	■□□□□ 0.59
SSR4-208	ENST00000471880	SRCIN1	Q9C0H9	1055 aa		18.76	■□□□□ 0.59
SSR4-208	ENST00000471880	CLEC11A	Q9Y240	323 aa		18.76	■□□□□ 0.59
SSR4-208	ENST00000471880	UFL1	O94874	794 aa		18.75	■□□□□ 0.59
SSR4-208	ENST00000471880	LMOD1	P29536	600 aa	Predicted RBP	18.75	■□□□□ 0.59
SSR4-208	ENST00000471880	GPC2	Q8N158	579 aa		18.75	■□□□□ 0.59
SSR4-208	ENST00000471880	L3MBTL3	Q96JM7	780 aa	Predicted RBP	18.75	■□□□□ 0.59
SSR4-208	ENST00000471880	EYA3	Q99504	573 aa		18.75	■□□□□ 0.59
SSR4-208	ENST00000471880	RTFDC1	Q9BY42	306 aa	Predicted RBP	18.75	■□□□□ 0.59
SSR4-208	ENST00000471880	HACL1	Q9UJ83	578 aa		18.75	■□□□□ 0.59
SSR4-208	ENST00000471880	RAD17	O75943	681 aa		18.74	■□□□□ 0.59
SSR4-208	ENST00000471880	IGHMBP2	P38935	993 aa	Known RBP	18.74	■□□□□ 0.59
SSR4-208	ENST00000471880	KIAA2012	Q0VF49	1180 aa		18.74	■□□□□ 0.59
SSR4-208	ENST00000471880	FSTL1	Q12841	308 aa		18.74	■□□□□ 0.59
SSR4-208	ENST00000471880	FAM161A	Q3B820	660 aa		18.74	■□□□□ 0.59
SSR4-208	ENST00000471880	VPS33B	Q9H267	617 aa		18.74	■□□□□ 0.59
SSR4-208	ENST00000471880	GGA1	Q9UJY5	639 aa		18.74	■□□□□ 0.59
SSR4-208	ENST00000471880	ZNRF3	Q9ULT6	936 aa		18.74	■□□□□ 0.59
SSR4-208	ENST00000471880		A0A1B0GUL6	1792 aa		18.73	■□□□□ 0.59
SSR4-208	ENST00000471880	GRM8	O00222	908 aa		18.73	■□□□□ 0.59
SSR4-208	ENST00000471880	ITGA6	P23229	1130 aa		18.73	■□□□□ 0.59

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