RNA–Protein interactions for RNA: ENST00000470537.1

XRN1-208, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 2

Gene XRN1, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-208ENST00000470537 DZIP3Q86Y13 1208 aaKnown RBP11.86□□□□□ -0.51
XRN1-208ENST00000470537 BEGAINQ9BUH8 593 aa11.86□□□□□ -0.51
XRN1-208ENST00000470537 FER1L6Q2WGJ9 1857 aa11.86□□□□□ -0.51
XRN1-208ENST00000470537 SCN4AP35499 1836 aa11.86□□□□□ -0.51
XRN1-208ENST00000470537 PASKQ96RG2 1323 aa11.86□□□□□ -0.51
XRN1-208ENST00000470537 VEGFBP49765 207 aa11.85□□□□□ -0.51
XRN1-208ENST00000470537 FKBP4Q02790 459 aaKnown RBP eCLIP11.85□□□□□ -0.51
XRN1-208ENST00000470537 GRIPAP1Q4V328 841 aa11.85□□□□□ -0.51
XRN1-208ENST00000470537 AMER1Q5JTC6 1135 aaPredicted RBP11.85□□□□□ -0.51
XRN1-208ENST00000470537 ZNF454Q8N9F8 522 aa11.85□□□□□ -0.51
XRN1-208ENST00000470537 JDP2Q8WYK2 163 aa11.85□□□□□ -0.51
XRN1-208ENST00000470537 CRISPLD2Q9H0B8 497 aa11.85□□□□□ -0.51
XRN1-208ENST00000470537 WBP1LQ9NX94 342 aa11.85□□□□□ -0.51
XRN1-208ENST00000470537 BTBD11A6QL63 1104 aa11.84□□□□□ -0.51
XRN1-208ENST00000470537 CAMTA2O94983 1202 aa11.84□□□□□ -0.51
XRN1-208ENST00000470537 ITGBL1O95965 494 aaPredicted RBP11.84□□□□□ -0.51
XRN1-208ENST00000470537 GTF2E1P29083 439 aaPredicted RBP11.84□□□□□ -0.51
XRN1-208ENST00000470537 EPHX2P34913 555 aa11.84□□□□□ -0.51
XRN1-208ENST00000470537 PPP1R15BQ5SWA1 713 aa11.84□□□□□ -0.51
XRN1-208ENST00000470537 CC2D2BQ6DHV5 1058 aa11.84□□□□□ -0.51
XRN1-208ENST00000470537 CCDC24Q8N4L8 307 aa11.84□□□□□ -0.51
XRN1-208ENST00000470537 RASSF10A6NK89 507 aa11.83□□□□□ -0.52
XRN1-208ENST00000470537 U2SURPO15042 1029 aaKnown RBP11.83□□□□□ -0.52
XRN1-208ENST00000470537 A1BGP04217 495 aa11.83□□□□□ -0.52
XRN1-208ENST00000470537 ECE1P42892 770 aa11.83□□□□□ -0.52
XRN1-208ENST00000470537 LBX1P52954 281 aa11.83□□□□□ -0.52
XRN1-208ENST00000470537 CNTROBQ8N137 903 aa11.83□□□□□ -0.52
XRN1-208ENST00000470537 GPC2Q8N158 579 aa11.83□□□□□ -0.52
XRN1-208ENST00000470537 IL17REQ8NFR9 667 aa11.83□□□□□ -0.52
XRN1-208ENST00000470537 C7orf43Q8WVR3 580 aa11.83□□□□□ -0.52
XRN1-208ENST00000470537 KLRG2A4D1S0 409 aaPredicted RBP11.82□□□□□ -0.52
XRN1-208ENST00000470537 SNRPA1P09661 255 aaKnown RBP11.82□□□□□ -0.52
XRN1-208ENST00000470537 LMOD1P29536 600 aaPredicted RBP11.82□□□□□ -0.52
XRN1-208ENST00000470537 RTF1Q92541 710 aaKnown RBP11.82□□□□□ -0.52
XRN1-208ENST00000470537 PCGF6Q9BYE7 350 aa11.82□□□□□ -0.52
XRN1-208ENST00000470537 TMX4Q9H1E5 349 aaPredicted RBP11.82□□□□□ -0.52
XRN1-208ENST00000470537 ABT1Q9ULW3 272 aaKnown RBP11.82□□□□□ -0.52
XRN1-208ENST00000470537 UBR2Q8IWV8 1755 aa11.82□□□□□ -0.52
XRN1-208ENST00000470537 VIRMAQ69YN4 1812 aaKnown RBP11.81□□□□□ -0.52
XRN1-208ENST00000470537 ANKRD31Q8N7Z5 1873 aa11.81□□□□□ -0.52
XRN1-208ENST00000470537 FZD9O00144 591 aa11.81□□□□□ -0.52
XRN1-208ENST00000470537 IARSP41252 1262 aaKnown RBP11.81□□□□□ -0.52
XRN1-208ENST00000470537 EIF6P56537 245 aaKnown RBP11.81□□□□□ -0.52
XRN1-208ENST00000470537 CFAP53Q96M91 514 aa11.81□□□□□ -0.52
XRN1-208ENST00000470537 NYXQ9GZU5 481 aa11.81□□□□□ -0.52
XRN1-208ENST00000470537 ZNF277Q9NRM2 450 aaPredicted RBP11.81□□□□□ -0.52
XRN1-208ENST00000470537 NIP7Q9Y221 180 aaKnown RBP eCLIP11.81□□□□□ -0.52
XRN1-208ENST00000470537 VPS9D1Q9Y2B5 631 aa11.81□□□□□ -0.52
XRN1-208ENST00000470537 WDR33Q9C0J8 1336 aaKnown RBP11.81□□□□□ -0.52
XRN1-208ENST00000470537 SLX4Q8IY92 1834 aa11.81□□□□□ -0.52
XRN1-208ENST00000470537 PSMD1Q99460 953 aa11.8□□□□□ -0.52
XRN1-208ENST00000470537 NUDCQ9Y266 331 aa11.8□□□□□ -0.52
XRN1-208ENST00000470537 SCN7AQ01118 1682 aa11.79□□□□□ -0.52
XRN1-208ENST00000470537 CC2D1BQ5T0F9 858 aaKnown RBP11.79□□□□□ -0.52
XRN1-208ENST00000470537 MAP1SQ66K74 1059 aaPredicted RBP11.79□□□□□ -0.52
XRN1-208ENST00000470537 SYNE4Q8N205 404 aa11.79□□□□□ -0.52
XRN1-208ENST00000470537 ABHD8Q96I13 439 aa11.79□□□□□ -0.52
XRN1-208ENST00000470537 USP16Q9Y5T5 823 aa11.79□□□□□ -0.52
XRN1-208ENST00000470537 CA12O43570 354 aa11.78□□□□□ -0.52
XRN1-208ENST00000470537 DDX21Q9NR30 783 aaKnown RBP eCLIP11.78□□□□□ -0.52
XRN1-208ENST00000470537 RNF123Q5XPI4 1314 aa11.78□□□□□ -0.52
XRN1-208ENST00000470537 CEMIPQ8WUJ3 1361 aa11.78□□□□□ -0.52
XRN1-208ENST00000470537 ARFGEF2Q9Y6D5 1785 aa11.77□□□□□ -0.52
XRN1-208ENST00000470537 PER1O15534 1290 aaPredicted RBP11.77□□□□□ -0.53
XRN1-208ENST00000470537 HSPA8P11142 646 aaKnown RBP11.77□□□□□ -0.53
XRN1-208ENST00000470537 PDE4AP27815 886 aa11.77□□□□□ -0.53
XRN1-208ENST00000470537 MAP2K2P36507 400 aa11.77□□□□□ -0.53
XRN1-208ENST00000470537 MLLT1Q03111 559 aaPredicted RBP11.77□□□□□ -0.53
XRN1-208ENST00000470537 PAXIP1Q6ZW49 1069 aaPredicted RBP11.77□□□□□ -0.53
XRN1-208ENST00000470537 USP50Q70EL3 339 aaPredicted RBP11.77□□□□□ -0.53
XRN1-208ENST00000470537 RPGRQ92834 1020 aaKnown RBP11.77□□□□□ -0.53
XRN1-208ENST00000470537 GPR101Q96P66 508 aaPredicted RBP11.77□□□□□ -0.53
XRN1-208ENST00000470537 ZNF541Q9H0D2 1346 aa11.77□□□□□ -0.53
XRN1-208ENST00000470537 HTATSF1O43719 755 aaKnown RBP11.76□□□□□ -0.53
XRN1-208ENST00000470537 NEFMP07197 916 aa11.76□□□□□ -0.53
XRN1-208ENST00000470537 PTPREP23469 700 aa11.76□□□□□ -0.53
XRN1-208ENST00000470537 FOSBP53539 338 aa11.76□□□□□ -0.53
XRN1-208ENST00000470537 VPS33BQ9H267 617 aa11.76□□□□□ -0.53
XRN1-208ENST00000470537 GJA3Q9Y6H8 435 aa11.76□□□□□ -0.53
XRN1-208ENST00000470537 COL11A2P13942 1736 aaPredicted RBP11.76□□□□□ -0.53
XRN1-208ENST00000470537 NPC1L1Q9UHC9 1359 aa11.76□□□□□ -0.53
XRN1-208ENST00000470537 CACNA1SQ13698 1873 aa11.75□□□□□ -0.53
XRN1-208ENST00000470537 CCDC85CA6NKD9 419 aa11.75□□□□□ -0.53
XRN1-208ENST00000470537 ERVV-1B6SEH8 477 aa11.75□□□□□ -0.53
XRN1-208ENST00000470537 PTPN5P54829 565 aa11.75□□□□□ -0.53
XRN1-208ENST00000470537 LARGE2Q8N3Y3 721 aa11.75□□□□□ -0.53
XRN1-208ENST00000470537 CAPNS2Q96L46 248 aa11.75□□□□□ -0.53
XRN1-208ENST00000470537 KIF7Q2M1P5 1343 aa11.75□□□□□ -0.53
XRN1-208ENST00000470537 FAM177BA6PVY3 158 aa11.74□□□□□ -0.53
XRN1-208ENST00000470537 PRKAR2BP31323 418 aa11.74□□□□□ -0.53
XRN1-208ENST00000470537 TAF7Q15545 349 aaPredicted RBP11.74□□□□□ -0.53
XRN1-208ENST00000470537 FAM161AQ3B820 660 aa11.74□□□□□ -0.53
XRN1-208ENST00000470537 CRY2Q49AN0 593 aa11.74□□□□□ -0.53
XRN1-208ENST00000470537 PNISRQ8TF01 805 aaKnown RBP11.74□□□□□ -0.53
XRN1-208ENST00000470537 SLC4A5Q9BY07 1137 aa11.74□□□□□ -0.53
XRN1-208ENST00000470537 KCNQ3O43525 872 aa11.73□□□□□ -0.53
XRN1-208ENST00000470537 HOXA10P31260 410 aaPredicted RBP11.73□□□□□ -0.53
XRN1-208ENST00000470537 RGS19P49795 217 aa11.73□□□□□ -0.53
XRN1-208ENST00000470537 KIF6Q6ZMV9 814 aa11.73□□□□□ -0.53
XRN1-208ENST00000470537 NIM1KQ8IY84 436 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms