RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 FAM89AQ96GI7 184 aa21.45■■□□□ 1.02
CCDC28B-204ENST00000469003 CLEC11AQ9Y240 323 aa21.45■■□□□ 1.02
CCDC28B-204ENST00000469003 LTBP1Q14766 1721 aa21.44■■□□□ 1.02
CCDC28B-204ENST00000469003 GOLGA2Q08379 1002 aa21.44■■□□□ 1.02
CCDC28B-204ENST00000469003 DPP8Q6V1X1 898 aaPredicted RBP21.44■■□□□ 1.02
CCDC28B-204ENST00000469003 TMC4Q7Z404 712 aa21.44■■□□□ 1.02
CCDC28B-204ENST00000469003 RIC3Q7Z5B4 369 aa21.44■■□□□ 1.02
CCDC28B-204ENST00000469003 MPNDQ8N594 471 aa21.44■■□□□ 1.02
CCDC28B-204ENST00000469003 C8orf58Q8NAV2 365 aa21.44■■□□□ 1.02
CCDC28B-204ENST00000469003 MKRN1Q9UHC7 482 aaKnown RBP21.44■■□□□ 1.02
CCDC28B-204ENST00000469003 ITGBL1O95965 494 aaPredicted RBP21.43■■□□□ 1.02
CCDC28B-204ENST00000469003 LMOD1P29536 600 aaPredicted RBP21.43■■□□□ 1.02
CCDC28B-204ENST00000469003 SF3B3Q15393 1217 aaKnown RBP21.43■■□□□ 1.02
CCDC28B-204ENST00000469003 CHMP4AQ9BY43 222 aa21.43■■□□□ 1.02
CCDC28B-204ENST00000469003 PHAXQ9H814 394 aaKnown RBP21.43■■□□□ 1.02
CCDC28B-204ENST00000469003 LRRC37AA6NMS7 1700 aa21.43■■□□□ 1.02
CCDC28B-204ENST00000469003 SCNN1DP51172 638 aa21.41■■□□□ 1.02
CCDC28B-204ENST00000469003 CCDC27Q2M243 656 aa21.41■■□□□ 1.02
CCDC28B-204ENST00000469003 CCDC30Q5VVM6 783 aa21.41■■□□□ 1.02
CCDC28B-204ENST00000469003 ZNRF3Q9ULT6 936 aa21.41■■□□□ 1.02
CCDC28B-204ENST00000469003 IRS4O14654 1257 aaPredicted RBP21.4■■□□□ 1.02
CCDC28B-204ENST00000469003 KIAA2012Q0VF49 1180 aa21.4■■□□□ 1.02
CCDC28B-204ENST00000469003 EPS15P42566 896 aa21.39■■□□□ 1.01
CCDC28B-204ENST00000469003 RTL5Q5HYW3 569 aaPredicted RBP21.39■■□□□ 1.01
CCDC28B-204ENST00000469003 MAP1SQ66K74 1059 aaPredicted RBP21.39■■□□□ 1.01
CCDC28B-204ENST00000469003 CNTROBQ8N137 903 aa21.39■■□□□ 1.01
CCDC28B-204ENST00000469003 ZBTB38Q8NAP3 1195 aaPredicted RBP21.39■■□□□ 1.01
CCDC28B-204ENST00000469003 DUOX1Q9NRD9 1551 aa21.39■■□□□ 1.01
CCDC28B-204ENST00000469003 TMEM88BA6NKF7 163 aa21.38■■□□□ 1.01
CCDC28B-204ENST00000469003 DDX58O95786 925 aaKnown RBP21.38■■□□□ 1.01
CCDC28B-204ENST00000469003 CXCL9Q07325 125 aa21.38■■□□□ 1.01
CCDC28B-204ENST00000469003 TSPYL6Q8N831 410 aa21.38■■□□□ 1.01
CCDC28B-204ENST00000469003 CELF1Q92879 486 aaKnown RBP21.38■■□□□ 1.01
CCDC28B-204ENST00000469003 MYD88Q99836 296 aa21.38■■□□□ 1.01
CCDC28B-204ENST00000469003 CNTNAP1P78357 1384 aa21.37■■□□□ 1.01
CCDC28B-204ENST00000469003 HSP90B1P14625 803 aaKnown RBP21.37■■□□□ 1.01
CCDC28B-204ENST00000469003 USP50Q70EL3 339 aaPredicted RBP21.37■■□□□ 1.01
CCDC28B-204ENST00000469003 WWC1Q8IX03 1113 aa21.37■■□□□ 1.01
CCDC28B-204ENST00000469003 CCDC191Q8NCU4 936 aa21.37■■□□□ 1.01
CCDC28B-204ENST00000469003 TSR2Q969E8 191 aaKnown RBP21.37■■□□□ 1.01
CCDC28B-204ENST00000469003 FOXN1O15353 648 aa21.36■■□□□ 1.01
CCDC28B-204ENST00000469003 NCBP3Q53F19 620 aaKnown RBP21.36■■□□□ 1.01
CCDC28B-204ENST00000469003 AIDAQ96BJ3 306 aa21.36■■□□□ 1.01
CCDC28B-204ENST00000469003 METTL22Q9BUU2 404 aaPredicted RBP21.36■■□□□ 1.01
CCDC28B-204ENST00000469003 GPRC5DQ9NZD1 345 aa21.36■■□□□ 1.01
CCDC28B-204ENST00000469003 COL4A1P02462 1669 aa21.36■■□□□ 1.01
CCDC28B-204ENST00000469003 ZNF316A6NFI3 1004 aaPredicted RBP21.35■■□□□ 1.01
CCDC28B-204ENST00000469003 PCCAP05165 728 aaPredicted RBP21.35■■□□□ 1.01
CCDC28B-204ENST00000469003 CIAPIN1Q6FI81 312 aa21.35■■□□□ 1.01
CCDC28B-204ENST00000469003 MRS2Q9HD23 443 aa21.35■■□□□ 1.01
CCDC28B-204ENST00000469003 IL16Q14005 1332 aa21.34■■□□□ 1.01
CCDC28B-204ENST00000469003 ANP32CO43423 234 aa21.34■■□□□ 1.01
CCDC28B-204ENST00000469003 TNIP1Q15025 636 aa21.34■■□□□ 1.01
CCDC28B-204ENST00000469003 PRDM10Q9NQV6 1147 aa21.34■■□□□ 1.01
CCDC28B-204ENST00000469003 ADARB2Q9NS39 739 aaKnown RBP21.34■■□□□ 1.01
CCDC28B-204ENST00000469003 CWC25Q9NXE8 425 aaPredicted RBP21.34■■□□□ 1.01
CCDC28B-204ENST00000469003 NSFL1CQ9UNZ2 370 aaKnown RBP21.34■■□□□ 1.01
CCDC28B-204ENST00000469003 CDHR2Q9BYE9 1310 aa21.33■■□□□ 1.01
CCDC28B-204ENST00000469003 GMPSP49915 693 aaPredicted RBP21.33■■□□□ 1.01
CCDC28B-204ENST00000469003 RPS8P62241 208 aaKnown RBP21.33■■□□□ 1.01
CCDC28B-204ENST00000469003 STK31Q9BXU1 1019 aa21.33■■□□□ 1.01
CCDC28B-204ENST00000469003 YDJCA8MPS7 323 aa21.32■■□□□ 1
CCDC28B-204ENST00000469003 PDE8AO60658 829 aa21.32■■□□□ 1
CCDC28B-204ENST00000469003 RAD17O75943 681 aa21.32■■□□□ 1
CCDC28B-204ENST00000469003 GPSM2P81274 684 aa21.32■■□□□ 1
CCDC28B-204ENST00000469003 WASHC4Q2M389 1173 aa21.32■■□□□ 1
CCDC28B-204ENST00000469003 TWISTNBQ3B726 338 aaPredicted RBP21.32■■□□□ 1
CCDC28B-204ENST00000469003 KSR2Q6VAB6 950 aa21.32■■□□□ 1
CCDC28B-204ENST00000469003 MAP3K2Q9Y2U5 619 aa21.32■■□□□ 1
CCDC28B-204ENST00000469003 CTCFP49711 727 aaPredicted RBP21.31■■□□□ 1
CCDC28B-204ENST00000469003 CCDC152Q4G0S7 254 aa21.31■■□□□ 1
CCDC28B-204ENST00000469003 POLLQ9UGP5 575 aa21.31■■□□□ 1
CCDC28B-204ENST00000469003 C6orf229H3BNL8 230 aa21.3■■□□□ 1
CCDC28B-204ENST00000469003 EYA3Q99504 573 aa21.3■■□□□ 1
CCDC28B-204ENST00000469003 BCL2L13Q9BXK5 485 aa21.3■■□□□ 1
CCDC28B-204ENST00000469003 SEC31BQ9NQW1 1179 aa21.3■■□□□ 1
CCDC28B-204ENST00000469003 TRPM7Q96QT4 1865 aa21.29■■□□□ 1
CCDC28B-204ENST00000469003 PI4KAP2A4QPH2 592 aa21.29■■□□□ 1
CCDC28B-204ENST00000469003 RASSF10A6NK89 507 aa21.29■■□□□ 1
CCDC28B-204ENST00000469003 VEGFBP49765 207 aa21.29■■□□□ 1
CCDC28B-204ENST00000469003 PI4KAP1Q8N8J0 262 aa21.29■■□□□ 1
CCDC28B-204ENST00000469003 JARID2Q92833 1246 aaPredicted RBP21.29■■□□□ 1
CCDC28B-204ENST00000469003 RIMBP2O15034 1052 aa21.28■■□□□ 1
CCDC28B-204ENST00000469003 IGKV5-2P06315 115 aa21.28■■□□□ 1
CCDC28B-204ENST00000469003 TBC1D16Q8TBP0 767 aa21.28■■□□□ 1
CCDC28B-204ENST00000469003 DBNDD1Q9H9R9 158 aa21.28■■□□□ 1
CCDC28B-204ENST00000469003 PODXL2Q9NZ53 605 aa21.28■■□□□ 1
CCDC28B-204ENST00000469003 NEXNQ0ZGT2 675 aa21.27■■□□□ 1
CCDC28B-204ENST00000469003 DEFB115Q30KQ5 88 aa21.27■■□□□ 1
CCDC28B-204ENST00000469003 SLC4A2P04920 1241 aa21.26■□□□□ 0.99
CCDC28B-204ENST00000469003 FMR1Q06787 632 aaKnown RBP eCLIP21.26■□□□□ 0.99
CCDC28B-204ENST00000469003 G2E3Q7L622 706 aa21.26■□□□□ 0.99
CCDC28B-204ENST00000469003 WDR63Q8IWG1 891 aa21.26■□□□□ 0.99
CCDC28B-204ENST00000469003 PGAP2Q9UHJ9 254 aa21.26■□□□□ 0.99
CCDC28B-204ENST00000469003 CNOT7Q9UIV1 285 aaKnown RBP21.26■□□□□ 0.99
CCDC28B-204ENST00000469003 ABT1Q9ULW3 272 aaKnown RBP21.26■□□□□ 0.99
CCDC28B-204ENST00000469003 FANCIQ9NVI1 1328 aa21.26■□□□□ 0.99
CCDC28B-204ENST00000469003 MYH3P11055 1940 aa21.25■□□□□ 0.99
CCDC28B-204ENST00000469003 CACNA1FO60840 1977 aa21.25■□□□□ 0.99
CCDC28B-204ENST00000469003 PSMD14O00487 310 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms