RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 GJA3Q9Y6H8 435 aa27.29■■□□□ 1.96
SHANK1-206ENST00000468654 MYH3P11055 1940 aa27.29■■□□□ 1.96
SHANK1-206ENST00000468654 SPEF2Q9C093 1822 aa27.28■■□□□ 1.96
SHANK1-206ENST00000468654 ELL2O00472 640 aaPredicted RBP27.28■■□□□ 1.96
SHANK1-206ENST00000468654 PPIP5K2O43314 1243 aa27.28■■□□□ 1.96
SHANK1-206ENST00000468654 GOLGA2Q08379 1002 aa27.28■■□□□ 1.96
SHANK1-206ENST00000468654 MAP1SQ66K74 1059 aaPredicted RBP27.28■■□□□ 1.96
SHANK1-206ENST00000468654 SP8Q8IXZ3 490 aa27.28■■□□□ 1.96
SHANK1-206ENST00000468654 NIM1KQ8IY84 436 aa27.28■■□□□ 1.96
SHANK1-206ENST00000468654 C8orf58Q8NAV2 365 aa27.28■■□□□ 1.96
SHANK1-206ENST00000468654 VPS33BQ9H267 617 aa27.28■■□□□ 1.96
SHANK1-206ENST00000468654 CLEC11AQ9Y240 323 aa27.28■■□□□ 1.96
SHANK1-206ENST00000468654 TMEM88BA6NKF7 163 aa27.27■■□□□ 1.96
SHANK1-206ENST00000468654 AOC3Q16853 763 aa27.27■■□□□ 1.96
SHANK1-206ENST00000468654 FAM89AQ96GI7 184 aa27.27■■□□□ 1.96
SHANK1-206ENST00000468654 PHAXQ9H814 394 aaKnown RBP27.27■■□□□ 1.96
SHANK1-206ENST00000468654 PSME4Q14997 1843 aa27.27■■□□□ 1.96
SHANK1-206ENST00000468654 CCDC27Q2M243 656 aa27.26■■□□□ 1.95
SHANK1-206ENST00000468654 TNS4Q8IZW8 715 aa27.26■■□□□ 1.95
SHANK1-206ENST00000468654 SUPT20HQ8NEM7 779 aa27.26■■□□□ 1.95
SHANK1-206ENST00000468654 DPP8Q6V1X1 898 aaPredicted RBP27.25■■□□□ 1.95
SHANK1-206ENST00000468654 TMC4Q7Z404 712 aa27.25■■□□□ 1.95
SHANK1-206ENST00000468654 RIC3Q7Z5B4 369 aa27.25■■□□□ 1.95
SHANK1-206ENST00000468654 SCN9AQ15858 1988 aa27.25■■□□□ 1.95
SHANK1-206ENST00000468654 LMOD1P29536 600 aaPredicted RBP27.24■■□□□ 1.95
SHANK1-206ENST00000468654 SF3B3Q15393 1217 aaKnown RBP27.24■■□□□ 1.95
SHANK1-206ENST00000468654 CNTROBQ8N137 903 aa27.24■■□□□ 1.95
SHANK1-206ENST00000468654 MPNDQ8N594 471 aa27.24■■□□□ 1.95
SHANK1-206ENST00000468654 POLR2AP24928 1970 aaKnown RBP27.23■■□□□ 1.95
SHANK1-206ENST00000468654 EPS15P42566 896 aa27.23■■□□□ 1.95
SHANK1-206ENST00000468654 CHMP4AQ9BY43 222 aa27.23■■□□□ 1.95
SHANK1-206ENST00000468654 VEGFBP49765 207 aa27.22■■□□□ 1.95
SHANK1-206ENST00000468654 CCDC30Q5VVM6 783 aa27.22■■□□□ 1.95
SHANK1-206ENST00000468654 IRS4O14654 1257 aaPredicted RBP27.21■■□□□ 1.95
SHANK1-206ENST00000468654 KIAA2012Q0VF49 1180 aa27.21■■□□□ 1.95
SHANK1-206ENST00000468654 WWC1Q8IX03 1113 aa27.21■■□□□ 1.95
SHANK1-206ENST00000468654 TSPYL6Q8N831 410 aa27.21■■□□□ 1.95
SHANK1-206ENST00000468654 ZNF316A6NFI3 1004 aaPredicted RBP27.2■■□□□ 1.94
SHANK1-206ENST00000468654 RTL5Q5HYW3 569 aaPredicted RBP27.2■■□□□ 1.94
SHANK1-206ENST00000468654 ZBTB38Q8NAP3 1195 aaPredicted RBP27.2■■□□□ 1.94
SHANK1-206ENST00000468654 TSR2Q969E8 191 aaKnown RBP27.2■■□□□ 1.94
SHANK1-206ENST00000468654 MRS2Q9HD23 443 aa27.2■■□□□ 1.94
SHANK1-206ENST00000468654 FOXN1O15353 648 aa27.19■■□□□ 1.94
SHANK1-206ENST00000468654 NCBP3Q53F19 620 aaKnown RBP27.19■■□□□ 1.94
SHANK1-206ENST00000468654 CELF1Q92879 486 aaKnown RBP27.19■■□□□ 1.94
SHANK1-206ENST00000468654 MYD88Q99836 296 aa27.19■■□□□ 1.94
SHANK1-206ENST00000468654 ZNRF3Q9ULT6 936 aa27.19■■□□□ 1.94
SHANK1-206ENST00000468654 IL16Q14005 1332 aa27.18■■□□□ 1.94
SHANK1-206ENST00000468654 RASSF10A6NK89 507 aa27.18■■□□□ 1.94
SHANK1-206ENST00000468654 CAPN15O75808 1086 aa27.18■■□□□ 1.94
SHANK1-206ENST00000468654 CCDC191Q8NCU4 936 aa27.18■■□□□ 1.94
SHANK1-206ENST00000468654 ANP32CO43423 234 aa27.17■■□□□ 1.94
SHANK1-206ENST00000468654 DDX58O95786 925 aaKnown RBP27.17■■□□□ 1.94
SHANK1-206ENST00000468654 FMR1Q06787 632 aaKnown RBP eCLIP27.17■■□□□ 1.94
SHANK1-206ENST00000468654 CXCL9Q07325 125 aa27.17■■□□□ 1.94
SHANK1-206ENST00000468654 METTL22Q9BUU2 404 aaPredicted RBP27.17■■□□□ 1.94
SHANK1-206ENST00000468654 GPRC5DQ9NZD1 345 aa27.17■■□□□ 1.94
SHANK1-206ENST00000468654 PCCAP05165 728 aaPredicted RBP27.15■■□□□ 1.94
SHANK1-206ENST00000468654 HSP90B1P14625 803 aaKnown RBP27.15■■□□□ 1.94
SHANK1-206ENST00000468654 USP50Q70EL3 339 aaPredicted RBP27.15■■□□□ 1.94
SHANK1-206ENST00000468654 CWC25Q9NXE8 425 aaPredicted RBP27.15■■□□□ 1.94
SHANK1-206ENST00000468654 ZNF646O15015 1829 aaPredicted RBP27.15■■□□□ 1.94
SHANK1-206ENST00000468654 CACNA1FO60840 1977 aa27.13■■□□□ 1.93
SHANK1-206ENST00000468654 GMPSP49915 693 aaPredicted RBP27.13■■□□□ 1.93
SHANK1-206ENST00000468654 CIAPIN1Q6FI81 312 aa27.13■■□□□ 1.93
SHANK1-206ENST00000468654 MAP3K2Q9Y2U5 619 aa27.13■■□□□ 1.93
SHANK1-206ENST00000468654 CDHR2Q9BYE9 1310 aa27.13■■□□□ 1.93
SHANK1-206ENST00000468654 TRAF5O00463 557 aa27.12■■□□□ 1.93
SHANK1-206ENST00000468654 TWISTNBQ3B726 338 aaPredicted RBP27.12■■□□□ 1.93
SHANK1-206ENST00000468654 STK31Q9BXU1 1019 aa27.12■■□□□ 1.93
SHANK1-206ENST00000468654 ADARB2Q9NS39 739 aaKnown RBP27.12■■□□□ 1.93
SHANK1-206ENST00000468654 ABT1Q9ULW3 272 aaKnown RBP27.12■■□□□ 1.93
SHANK1-206ENST00000468654 YDJCA8MPS7 323 aa27.11■■□□□ 1.93
SHANK1-206ENST00000468654 RPS8P62241 208 aaKnown RBP27.11■■□□□ 1.93
SHANK1-206ENST00000468654 DEFB115Q30KQ5 88 aa27.11■■□□□ 1.93
SHANK1-206ENST00000468654 NSFL1CQ9UNZ2 370 aaKnown RBP27.11■■□□□ 1.93
SHANK1-206ENST00000468654 RAD17O75943 681 aa27.1■■□□□ 1.93
SHANK1-206ENST00000468654 KSR2Q6VAB6 950 aa27.1■■□□□ 1.93
SHANK1-206ENST00000468654 PI4KAP2A4QPH2 592 aa27.09■■□□□ 1.93
SHANK1-206ENST00000468654 PDE8AO60658 829 aa27.09■■□□□ 1.93
SHANK1-206ENST00000468654 IGKV5-2P06315 115 aa27.09■■□□□ 1.93
SHANK1-206ENST00000468654 GPSM2P81274 684 aa27.09■■□□□ 1.93
SHANK1-206ENST00000468654 TNIP1Q15025 636 aa27.09■■□□□ 1.93
SHANK1-206ENST00000468654 CCDC152Q4G0S7 254 aa27.09■■□□□ 1.93
SHANK1-206ENST00000468654 PI4KAP1Q8N8J0 262 aa27.09■■□□□ 1.93
SHANK1-206ENST00000468654 SEC31BQ9NQW1 1179 aa27.09■■□□□ 1.93
SHANK1-206ENST00000468654 WBP1LQ9NX94 342 aa27.09■■□□□ 1.93
SHANK1-206ENST00000468654 POLLQ9UGP5 575 aa27.09■■□□□ 1.93
SHANK1-206ENST00000468654 WDR33Q9C0J8 1336 aaKnown RBP27.09■■□□□ 1.93
SHANK1-206ENST00000468654 FANCIQ9NVI1 1328 aa27.09■■□□□ 1.93
SHANK1-206ENST00000468654 WASHC4Q2M389 1173 aa27.08■■□□□ 1.93
SHANK1-206ENST00000468654 AIDAQ96BJ3 306 aa27.08■■□□□ 1.93
SHANK1-206ENST00000468654 CST9Q5W186 159 aa27.07■■□□□ 1.92
SHANK1-206ENST00000468654 JARID2Q92833 1246 aaPredicted RBP27.07■■□□□ 1.92
SHANK1-206ENST00000468654 SHTN1A0MZ66 631 aa27.06■■□□□ 1.92
SHANK1-206ENST00000468654 C6orf229H3BNL8 230 aa27.06■■□□□ 1.92
SHANK1-206ENST00000468654 CTCFP49711 727 aaPredicted RBP27.06■■□□□ 1.92
SHANK1-206ENST00000468654 TRPM4Q8TD43 1214 aa27.06■■□□□ 1.92
SHANK1-206ENST00000468654 PRDM10Q9NQV6 1147 aa27.06■■□□□ 1.92
SHANK1-206ENST00000468654 PODXL2Q9NZ53 605 aa27.06■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms