RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 DDR1Q08345 913 aa13.35□□□□□ -0.27
MSX1-202ENST00000468421 FAM161AQ3B820 660 aa13.35□□□□□ -0.27
MSX1-202ENST00000468421 ANKRD45Q5TZF3 282 aa13.35□□□□□ -0.27
MSX1-202ENST00000468421 NBPF5PQ86XG9 351 aaPredicted RBP13.35□□□□□ -0.27
MSX1-202ENST00000468421 TTLL11Q8NHH1 800 aa13.35□□□□□ -0.27
MSX1-202ENST00000468421 CCDC85AQ96PX6 553 aaPredicted RBP13.35□□□□□ -0.27
MSX1-202ENST00000468421 LNPKQ9C0E8 428 aa13.35□□□□□ -0.27
MSX1-202ENST00000468421 NOP58Q9Y2X3 529 aaKnown RBP13.35□□□□□ -0.27
MSX1-202ENST00000468421 SURF6O75683 361 aaKnown RBP13.34□□□□□ -0.27
MSX1-202ENST00000468421 RGS3P49796 1198 aa13.34□□□□□ -0.27
MSX1-202ENST00000468421 PTPN12Q05209 780 aaKnown RBP13.34□□□□□ -0.27
MSX1-202ENST00000468421 C3orf67Q6ZVT6 689 aa13.34□□□□□ -0.27
MSX1-202ENST00000468421 CHD1LQ86WJ1 897 aa13.34□□□□□ -0.27
MSX1-202ENST00000468421 CCDC24Q8N4L8 307 aa13.34□□□□□ -0.27
MSX1-202ENST00000468421 NYXQ9GZU5 481 aa13.34□□□□□ -0.27
MSX1-202ENST00000468421 POLRMTO00411 1230 aaKnown RBP13.33□□□□□ -0.28
MSX1-202ENST00000468421 MSL1Q68DK7 614 aa13.33□□□□□ -0.28
MSX1-202ENST00000468421 ZNF594Q96JF6 807 aaPredicted RBP13.33□□□□□ -0.28
MSX1-202ENST00000468421 SIL1Q9H173 461 aa13.33□□□□□ -0.28
MSX1-202ENST00000468421 GREM2Q9H772 168 aa13.33□□□□□ -0.28
MSX1-202ENST00000468421 COPRSQ9NQ92 184 aa13.33□□□□□ -0.28
MSX1-202ENST00000468421 RIC1Q4ADV7 1423 aa13.32□□□□□ -0.28
MSX1-202ENST00000468421 SERPINB2P05120 415 aa13.32□□□□□ -0.28
MSX1-202ENST00000468421 SLC10A5Q5PT55 438 aa13.32□□□□□ -0.28
MSX1-202ENST00000468421 PRR5LQ6MZQ0 368 aa13.32□□□□□ -0.28
MSX1-202ENST00000468421 PDGFDQ9GZP0 370 aaPredicted RBP13.32□□□□□ -0.28
MSX1-202ENST00000468421 COL11A2P13942 1736 aaPredicted RBP13.32□□□□□ -0.28
MSX1-202ENST00000468421 RAB11FIP3O75154 756 aa13.31□□□□□ -0.28
MSX1-202ENST00000468421 SASH1O94885 1247 aa13.31□□□□□ -0.28
MSX1-202ENST00000468421 ITGA6P23229 1130 aa13.31□□□□□ -0.28
MSX1-202ENST00000468421 GTF2E1P29083 439 aaPredicted RBP13.31□□□□□ -0.28
MSX1-202ENST00000468421 TPTE2Q6XPS3 522 aa13.31□□□□□ -0.28
MSX1-202ENST00000468421 NLGN1Q8N2Q7 840 aa13.31□□□□□ -0.28
MSX1-202ENST00000468421 CNBD1Q8NA66 436 aa13.31□□□□□ -0.28
MSX1-202ENST00000468421 RHPN1Q8TCX5 695 aa13.31□□□□□ -0.28
MSX1-202ENST00000468421 LRRCC1Q9C099 1032 aa13.31□□□□□ -0.28
MSX1-202ENST00000468421 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.31□□□□□ -0.28
MSX1-202ENST00000468421 RTL9Q8NET4 1388 aa13.31□□□□□ -0.28
MSX1-202ENST00000468421 G3BP1Q13283 466 aaKnown RBP eCLIP13.3□□□□□ -0.28
MSX1-202ENST00000468421 IFIT5Q13325 482 aaKnown RBP13.3□□□□□ -0.28
MSX1-202ENST00000468421 OS9Q13438 667 aaPredicted RBP13.3□□□□□ -0.28
MSX1-202ENST00000468421 CCDC57Q2TAC2 916 aa13.3□□□□□ -0.28
MSX1-202ENST00000468421 HSP90AB4PQ58FF6 505 aa13.3□□□□□ -0.28
MSX1-202ENST00000468421 C16orf71Q8IYS4 520 aaPredicted RBP13.3□□□□□ -0.28
MSX1-202ENST00000468421 OTUD7AQ8TE49 926 aaPredicted RBP13.3□□□□□ -0.28
MSX1-202ENST00000468421 PUS3Q9BZE2 481 aaKnown RBP13.3□□□□□ -0.28
MSX1-202ENST00000468421 BCL11AQ9H165 835 aa13.3□□□□□ -0.28
MSX1-202ENST00000468421 IL1RAPL2Q9NP60 686 aa13.3□□□□□ -0.28
MSX1-202ENST00000468421 ANKRD18BA2A2Z9 1011 aa13.29□□□□□ -0.28
MSX1-202ENST00000468421 NPHP1O15259 732 aa13.29□□□□□ -0.28
MSX1-202ENST00000468421 MMP10P09238 476 aa13.29□□□□□ -0.28
MSX1-202ENST00000468421 HSP90B1P14625 803 aaKnown RBP13.29□□□□□ -0.28
MSX1-202ENST00000468421 SF3B3Q15393 1217 aaKnown RBP13.29□□□□□ -0.28
MSX1-202ENST00000468421 CCDC152Q4G0S7 254 aa13.29□□□□□ -0.28
MSX1-202ENST00000468421 LRRC24Q50LG9 513 aa13.29□□□□□ -0.28
MSX1-202ENST00000468421 ATG9AQ7Z3C6 839 aa13.29□□□□□ -0.28
MSX1-202ENST00000468421 KIF1BPQ96EK5 621 aa13.29□□□□□ -0.28
MSX1-202ENST00000468421 SEC31BQ9NQW1 1179 aa13.29□□□□□ -0.28
MSX1-202ENST00000468421 CACNA1SQ13698 1873 aa13.29□□□□□ -0.28
MSX1-202ENST00000468421 ARAP2Q8WZ64 1704 aa13.28□□□□□ -0.28
MSX1-202ENST00000468421 EYA2O00167 538 aa13.28□□□□□ -0.28
MSX1-202ENST00000468421 ERC1Q8IUD2 1116 aa13.28□□□□□ -0.28
MSX1-202ENST00000468421 SALL3Q9BXA9 1300 aa13.28□□□□□ -0.28
MSX1-202ENST00000468421 ST5P78524 1137 aa13.27□□□□□ -0.29
MSX1-202ENST00000468421 TAF7LQ5H9L4 462 aa13.27□□□□□ -0.29
MSX1-202ENST00000468421 PLEKHM2Q8IWE5 1019 aa13.27□□□□□ -0.29
MSX1-202ENST00000468421 NLRP3Q96P20 1036 aa13.27□□□□□ -0.29
MSX1-202ENST00000468421 ZBTB47Q9UFB7 747 aaPredicted RBP13.27□□□□□ -0.29
MSX1-202ENST00000468421 ZNF609O15014 1411 aa13.27□□□□□ -0.29
MSX1-202ENST00000468421 CIAO1O76071 339 aa13.26□□□□□ -0.29
MSX1-202ENST00000468421 IL15P40933 162 aaPredicted RBP13.26□□□□□ -0.29
MSX1-202ENST00000468421 TFCP2Q12800 502 aa13.26□□□□□ -0.29
MSX1-202ENST00000468421 AK9Q5TCS8 1911 aa13.26□□□□□ -0.29
MSX1-202ENST00000468421 RIPOR2Q9Y4F9 1068 aa13.26□□□□□ -0.29
MSX1-202ENST00000468421 PARP3Q9Y6F1 533 aa13.26□□□□□ -0.29
MSX1-202ENST00000468421 KIF13BQ9NQT8 1826 aa13.25□□□□□ -0.29
MSX1-202ENST00000468421 LRRC37AA6NMS7 1700 aa13.25□□□□□ -0.29
MSX1-202ENST00000468421 EAF2Q96CJ1 260 aaPredicted RBP13.25□□□□□ -0.29
MSX1-202ENST00000468421 FBXO3Q9UK99 471 aa13.25□□□□□ -0.29
MSX1-202ENST00000468421 DLEC1Q9Y238 1755 aa13.25□□□□□ -0.29
MSX1-202ENST00000468421 R3HDM1Q15032 1099 aaKnown RBP13.24□□□□□ -0.29
MSX1-202ENST00000468421 TSHZ3Q63HK5 1081 aa13.24□□□□□ -0.29
MSX1-202ENST00000468421 LDHAL6AQ6ZMR3 332 aa13.24□□□□□ -0.29
MSX1-202ENST00000468421 SLC16A10Q8TF71 515 aa13.24□□□□□ -0.29
MSX1-202ENST00000468421 CELF1Q92879 486 aaKnown RBP13.24□□□□□ -0.29
MSX1-202ENST00000468421 KIAA1551Q9HCM1 1747 aa13.23□□□□□ -0.29
MSX1-202ENST00000468421 MX1P20591 662 aa13.23□□□□□ -0.29
MSX1-202ENST00000468421 IGHMBP2P38935 993 aaKnown RBP13.23□□□□□ -0.29
MSX1-202ENST00000468421 PDE1AP54750 535 aa13.23□□□□□ -0.29
MSX1-202ENST00000468421 CRY2Q49AN0 593 aa13.23□□□□□ -0.29
MSX1-202ENST00000468421 TNNI3KQ59H18 835 aa13.23□□□□□ -0.29
MSX1-202ENST00000468421 AACSQ86V21 672 aa13.23□□□□□ -0.29
MSX1-202ENST00000468421 CLASRPQ8N2M8 674 aaKnown RBP13.23□□□□□ -0.29
MSX1-202ENST00000468421 VGLL2Q8N8G2 317 aa13.23□□□□□ -0.29
MSX1-202ENST00000468421 CDC5LQ99459 802 aaKnown RBP13.23□□□□□ -0.29
MSX1-202ENST00000468421 CCDC8Q9H0W5 538 aaPredicted RBP13.23□□□□□ -0.29
MSX1-202ENST00000468421 CNNM1Q9NRU3 951 aa13.23□□□□□ -0.29
MSX1-202ENST00000468421 TLR7Q9NYK1 1049 aaKnown RBP13.23□□□□□ -0.29
MSX1-202ENST00000468421 FPGT-TNNI3KV9GXZ4 949 aa13.23□□□□□ -0.29
MSX1-202ENST00000468421 KLRG2A4D1S0 409 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms