RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 CHADLQ6NUI6 762 aa24.51■■□□□ 1.51
COL7A1-207ENST00000467985 KSR2Q6VAB6 950 aa24.51■■□□□ 1.51
COL7A1-207ENST00000467985 NIM1KQ8IY84 436 aa24.51■■□□□ 1.51
COL7A1-207ENST00000467985 MPNDQ8N594 471 aa24.51■■□□□ 1.51
COL7A1-207ENST00000467985 DNAJC5GQ8N7S2 189 aa24.51■■□□□ 1.51
COL7A1-207ENST00000467985 TAF1DQ9H5J8 278 aaPredicted RBP24.51■■□□□ 1.51
COL7A1-207ENST00000467985 CWC25Q9NXE8 425 aaPredicted RBP24.51■■□□□ 1.51
COL7A1-207ENST00000467985 HACL1Q9UJ83 578 aa24.51■■□□□ 1.51
COL7A1-207ENST00000467985 FANCIQ9NVI1 1328 aa24.51■■□□□ 1.51
COL7A1-207ENST00000467985 RTL5Q5HYW3 569 aaPredicted RBP24.5■■□□□ 1.51
COL7A1-207ENST00000467985 SLC51AQ86UW1 340 aa24.5■■□□□ 1.51
COL7A1-207ENST00000467985 FAM9BQ8IZU0 186 aa24.5■■□□□ 1.51
COL7A1-207ENST00000467985 MAP3K2Q9Y2U5 619 aa24.5■■□□□ 1.51
COL7A1-207ENST00000467985 SALL2Q9Y467 1007 aaPredicted RBP24.5■■□□□ 1.51
COL7A1-207ENST00000467985 COL4A5P29400 1685 aa24.5■■□□□ 1.51
COL7A1-207ENST00000467985 PCCAP05165 728 aaPredicted RBP24.49■■□□□ 1.51
COL7A1-207ENST00000467985 LDHDQ86WU2 507 aa24.49■■□□□ 1.51
COL7A1-207ENST00000467985 SLC4A2P04920 1241 aa24.48■■□□□ 1.51
COL7A1-207ENST00000467985 NEXNQ0ZGT2 675 aa24.48■■□□□ 1.51
COL7A1-207ENST00000467985 LRRC37AA6NMS7 1700 aa24.47■■□□□ 1.51
COL7A1-207ENST00000467985 PI4KAP2A4QPH2 592 aa24.47■■□□□ 1.51
COL7A1-207ENST00000467985 AOC3Q16853 763 aa24.47■■□□□ 1.51
COL7A1-207ENST00000467985 PNMA8AQ86V59 439 aaPredicted RBP24.47■■□□□ 1.51
COL7A1-207ENST00000467985 PI4KAP1Q8N8J0 262 aa24.47■■□□□ 1.51
COL7A1-207ENST00000467985 TAF1P21675 1872 aa24.47■■□□□ 1.51
COL7A1-207ENST00000467985 PCNTO95613 3336 aa24.46■■□□□ 1.51
COL7A1-207ENST00000467985 EPHX2P34913 555 aa24.46■■□□□ 1.51
COL7A1-207ENST00000467985 GJA3Q9Y6H8 435 aa24.46■■□□□ 1.51
COL7A1-207ENST00000467985 CACNA1FO60840 1977 aa24.45■■□□□ 1.51
COL7A1-207ENST00000467985 LMOD1P29536 600 aaPredicted RBP24.45■■□□□ 1.5
COL7A1-207ENST00000467985 KIAA2012Q0VF49 1180 aa24.45■■□□□ 1.5
COL7A1-207ENST00000467985 CELF1Q92879 486 aaKnown RBP24.45■■□□□ 1.5
COL7A1-207ENST00000467985 MYH16Q9H6N6 1097 aa24.45■■□□□ 1.5
COL7A1-207ENST00000467985 ZNRF3Q9ULT6 936 aa24.45■■□□□ 1.5
COL7A1-207ENST00000467985 PDE8AO60658 829 aa24.44■■□□□ 1.5
COL7A1-207ENST00000467985 POTEIP0CG38 1075 aa24.44■■□□□ 1.5
COL7A1-207ENST00000467985 POTEJP0CG39 1038 aa24.44■■□□□ 1.5
COL7A1-207ENST00000467985 RPS8P62241 208 aaKnown RBP24.44■■□□□ 1.5
COL7A1-207ENST00000467985 CCDC152Q4G0S7 254 aa24.44■■□□□ 1.5
COL7A1-207ENST00000467985 KLRG1Q96E93 195 aa24.44■■□□□ 1.5
COL7A1-207ENST00000467985 CDHR2Q9BYE9 1310 aa24.43■■□□□ 1.5
COL7A1-207ENST00000467985 HTRA3P83110 453 aa24.43■■□□□ 1.5
COL7A1-207ENST00000467985 EAPPQ56P03 285 aaPredicted RBP24.43■■□□□ 1.5
COL7A1-207ENST00000467985 VAMP4O75379 141 aa24.42■■□□□ 1.5
COL7A1-207ENST00000467985 IGKV5-2P06315 115 aa24.42■■□□□ 1.5
COL7A1-207ENST00000467985 EXOSC9Q06265 439 aaKnown RBP24.42■■□□□ 1.5
COL7A1-207ENST00000467985 FLIIQ13045 1269 aa24.42■■□□□ 1.5
COL7A1-207ENST00000467985 G2E3Q7L622 706 aa24.41■■□□□ 1.5
COL7A1-207ENST00000467985 NSFL1CQ9UNZ2 370 aaKnown RBP24.41■■□□□ 1.5
COL7A1-207ENST00000467985 CLEC11AQ9Y240 323 aa24.41■■□□□ 1.5
COL7A1-207ENST00000467985 DUOX1Q9NRD9 1551 aa24.4■■□□□ 1.5
COL7A1-207ENST00000467985 ADAMTSL1Q8N6G6 1762 aa24.39■■□□□ 1.5
COL7A1-207ENST00000467985 NEURL1BA8MQ27 555 aa24.39■■□□□ 1.49
COL7A1-207ENST00000467985 FKBP5Q13451 457 aaPredicted RBP24.39■■□□□ 1.49
COL7A1-207ENST00000467985 TNIP1Q15025 636 aa24.39■■□□□ 1.49
COL7A1-207ENST00000467985 WASHC4Q2M389 1173 aa24.39■■□□□ 1.49
COL7A1-207ENST00000467985 SCNN1DP51172 638 aa24.38■■□□□ 1.49
COL7A1-207ENST00000467985 CXCL9Q07325 125 aa24.38■■□□□ 1.49
COL7A1-207ENST00000467985 JARID2Q92833 1246 aaPredicted RBP24.38■■□□□ 1.49
COL7A1-207ENST00000467985 EYA3Q99504 573 aa24.38■■□□□ 1.49
COL7A1-207ENST00000467985 SEC31BQ9NQW1 1179 aa24.38■■□□□ 1.49
COL7A1-207ENST00000467985 C6orf229H3BNL8 230 aa24.37■■□□□ 1.49
COL7A1-207ENST00000467985 GPSM2P81274 684 aa24.37■■□□□ 1.49
COL7A1-207ENST00000467985 CWF19L2Q2TBE0 894 aaKnown RBP24.37■■□□□ 1.49
COL7A1-207ENST00000467985 CIAPIN1Q6FI81 312 aa24.37■■□□□ 1.49
COL7A1-207ENST00000467985 SPINK5Q9NQ38 1064 aaPredicted RBP24.37■■□□□ 1.49
COL7A1-207ENST00000467985 CREBZFQ9NS37 354 aa24.37■■□□□ 1.49
COL7A1-207ENST00000467985 PASKQ96RG2 1323 aa24.36■■□□□ 1.49
COL7A1-207ENST00000467985 CTSWP56202 376 aa24.36■■□□□ 1.49
COL7A1-207ENST00000467985 USP50Q70EL3 339 aaPredicted RBP24.36■■□□□ 1.49
COL7A1-207ENST00000467985 JMYQ8N9B5 988 aa24.36■■□□□ 1.49
COL7A1-207ENST00000467985 DNAAF4Q8WXU2 420 aa24.36■■□□□ 1.49
COL7A1-207ENST00000467985 PODXL2Q9NZ53 605 aa24.36■■□□□ 1.49
COL7A1-207ENST00000467985 COL4A1P02462 1669 aa24.36■■□□□ 1.49
COL7A1-207ENST00000467985 EPS15P42566 896 aa24.35■■□□□ 1.49
COL7A1-207ENST00000467985 ANKRD18AQ8IVF6 992 aa24.35■■□□□ 1.49
COL7A1-207ENST00000467985 CDC5LQ99459 802 aaKnown RBP24.35■■□□□ 1.49
COL7A1-207ENST00000467985 GPRC5DQ9NZD1 345 aa24.35■■□□□ 1.49
COL7A1-207ENST00000467985 POLLQ9UGP5 575 aa24.35■■□□□ 1.49
COL7A1-207ENST00000467985 LTBP1Q14766 1721 aa24.35■■□□□ 1.49
COL7A1-207ENST00000467985 MYH3P11055 1940 aa24.34■■□□□ 1.49
COL7A1-207ENST00000467985 H7C1W4 665 aa24.34■■□□□ 1.49
COL7A1-207ENST00000467985 ITGBL1O95965 494 aaPredicted RBP24.34■■□□□ 1.49
COL7A1-207ENST00000467985 GCKRQ14397 625 aa24.34■■□□□ 1.49
COL7A1-207ENST00000467985 UBE3BQ7Z3V4 1068 aa24.34■■□□□ 1.49
COL7A1-207ENST00000467985 LINS1Q8NG48 757 aa24.34■■□□□ 1.49
COL7A1-207ENST00000467985 TBC1D16Q8TBP0 767 aa24.34■■□□□ 1.49
COL7A1-207ENST00000467985 ANKIB1Q9P2G1 1089 aa24.34■■□□□ 1.49
COL7A1-207ENST00000467985 ZNF521Q96K83 1311 aa24.34■■□□□ 1.49
COL7A1-207ENST00000467985 RTL9Q8NET4 1388 aa24.33■■□□□ 1.49
COL7A1-207ENST00000467985 RAD17O75943 681 aa24.33■■□□□ 1.49
COL7A1-207ENST00000467985 CNTROBQ8N137 903 aa24.33■■□□□ 1.49
COL7A1-207ENST00000467985 TTLL11Q8NHH1 800 aa24.33■■□□□ 1.49
COL7A1-207ENST00000467985 CCDC85AQ96PX6 553 aaPredicted RBP24.33■■□□□ 1.49
COL7A1-207ENST00000467985 ADARB2Q9NS39 739 aaKnown RBP24.33■■□□□ 1.49
COL7A1-207ENST00000467985 GMPSP49915 693 aaPredicted RBP24.32■■□□□ 1.48
COL7A1-207ENST00000467985 BCL2L13Q9BXK5 485 aa24.32■■□□□ 1.48
COL7A1-207ENST00000467985 ZC3H12CQ9C0D7 883 aaKnown RBP24.32■■□□□ 1.48
COL7A1-207ENST00000467985 GGA1Q9UJY5 639 aa24.32■■□□□ 1.48
COL7A1-207ENST00000467985 MAP1SQ66K74 1059 aaPredicted RBP24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms