RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 FAM114A1Q8IWE2 563 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 VAT1LQ9HCJ6 419 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 TCP11L1Q9NUJ3 509 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 BCCIPQ9P287 314 aaKnown RBP eCLIP10.03□□□□□ -0.8
HPS4-209ENST00000466781 ARHGEF5Q12774 1597 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 ARHGEF10O15013 1369 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 ALS2CR12Q96Q35 445 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 TCERG1LQ5VWI1 586 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 CNNM3Q8NE01 707 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 DNAAF4Q8WXU2 420 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 GRPEL1Q9HAV7 217 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 MAP3K2Q9Y2U5 619 aa10.03□□□□□ -0.8
HPS4-209ENST00000466781 RTCBQ9Y3I0 505 aaKnown RBP10.03□□□□□ -0.8
HPS4-209ENST00000466781 TSPY2A6NKD2 308 aa10.02□□□□□ -0.8
HPS4-209ENST00000466781 CCDC174Q6PII3 467 aa10.02□□□□□ -0.8
HPS4-209ENST00000466781 LRRC27Q9C0I9 530 aa10.02□□□□□ -0.8
HPS4-209ENST00000466781 ASXL1Q8IXJ9 1541 aa10.02□□□□□ -0.81
HPS4-209ENST00000466781 PAFAH1B1P43034 410 aa10.02□□□□□ -0.81
HPS4-209ENST00000466781 GUCY1B3Q02153 619 aa10.02□□□□□ -0.81
HPS4-209ENST00000466781 TMCO3Q6UWJ1 677 aa10.02□□□□□ -0.81
HPS4-209ENST00000466781 UBXN4Q92575 508 aa10.02□□□□□ -0.81
HPS4-209ENST00000466781 NYXQ9GZU5 481 aa10.02□□□□□ -0.81
HPS4-209ENST00000466781 SH2B1Q9NRF2 756 aaPredicted RBP10.02□□□□□ -0.81
HPS4-209ENST00000466781 SLAIN2Q9P270 581 aa10.02□□□□□ -0.81
HPS4-209ENST00000466781 PLEKHH1Q9ULM0 1364 aa10.02□□□□□ -0.81
HPS4-209ENST00000466781 UQCRHLA0A096LP55 91 aa10.02□□□□□ -0.81
HPS4-209ENST00000466781 UQCRHP07919 91 aa10.02□□□□□ -0.81
HPS4-209ENST00000466781 SFPQP23246 707 aaKnown RBP eCLIP10.02□□□□□ -0.81
HPS4-209ENST00000466781 ATP5J2-PTCD1G3V325 749 aa10.02□□□□□ -0.81
HPS4-209ENST00000466781 CKAP2LQ8IYA6 745 aa10.02□□□□□ -0.81
HPS4-209ENST00000466781 PYM1Q9BRP8 204 aaKnown RBP10.02□□□□□ -0.81
HPS4-209ENST00000466781 CCDC8Q9H0W5 538 aaPredicted RBP10.02□□□□□ -0.81
HPS4-209ENST00000466781 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.02□□□□□ -0.81
HPS4-209ENST00000466781 TMEM2Q9UHN6 1383 aa10.02□□□□□ -0.81
HPS4-209ENST00000466781 KIF2AO00139 706 aaPredicted RBP10.01□□□□□ -0.81
HPS4-209ENST00000466781 WWC3Q9ULE0 1092 aa10.01□□□□□ -0.81
HPS4-209ENST00000466781 NPHP4O75161 1426 aaPredicted RBP10.01□□□□□ -0.81
HPS4-209ENST00000466781 TMCO5BA8MYB1 307 aa10.01□□□□□ -0.81
HPS4-209ENST00000466781 ALDH1L2Q3SY69 923 aa10.01□□□□□ -0.81
HPS4-209ENST00000466781 CCDC152Q4G0S7 254 aa10.01□□□□□ -0.81
HPS4-209ENST00000466781 SKAP1Q86WV1 359 aa10.01□□□□□ -0.81
HPS4-209ENST00000466781 TBCAO75347 108 aaKnown RBP10.01□□□□□ -0.81
HPS4-209ENST00000466781 GCP02774 474 aa10.01□□□□□ -0.81
HPS4-209ENST00000466781 DNAJC5Q9H3Z4 198 aa10.01□□□□□ -0.81
HPS4-209ENST00000466781 SYNCQ9H7C4 482 aa10.01□□□□□ -0.81
HPS4-209ENST00000466781 CIZ1Q9ULV3 898 aaPredicted RBP10.01□□□□□ -0.81
HPS4-209ENST00000466781 KIF4BQ2VIQ3 1234 aa10.01□□□□□ -0.81
HPS4-209ENST00000466781 FLT4P35916 1363 aa10.01□□□□□ -0.81
HPS4-209ENST00000466781 MAGI2Q86UL8 1455 aa10.01□□□□□ -0.81
HPS4-209ENST00000466781 ACTN2P35609 894 aa10□□□□□ -0.81
HPS4-209ENST00000466781 TMEM67Q5HYA8 995 aa10□□□□□ -0.81
HPS4-209ENST00000466781 C20orf194Q5TEA3 1177 aa10□□□□□ -0.81
HPS4-209ENST00000466781 FERMT3Q86UX7 667 aa10□□□□□ -0.81
HPS4-209ENST00000466781 NAA15Q9BXJ9 866 aaKnown RBP10□□□□□ -0.81
HPS4-209ENST00000466781 CRNKL1Q9BZJ0 848 aaKnown RBP10□□□□□ -0.81
HPS4-209ENST00000466781 ADGRL2O95490 1459 aa10□□□□□ -0.81
HPS4-209ENST00000466781 UGGT1Q9NYU2 1555 aa10□□□□□ -0.81
HPS4-209ENST00000466781 PPP4R3BQ5MIZ7 849 aa10□□□□□ -0.81
HPS4-209ENST00000466781 DDX23Q9BUQ8 820 aaKnown RBP10□□□□□ -0.81
HPS4-209ENST00000466781 FSD2A1L4K1 749 aa10□□□□□ -0.81
HPS4-209ENST00000466781 CTAGE5O15320 804 aa10□□□□□ -0.81
HPS4-209ENST00000466781 ANXA1P04083 346 aa10□□□□□ -0.81
HPS4-209ENST00000466781 ERMNQ8TAM6 284 aa10□□□□□ -0.81
HPS4-209ENST00000466781 SIRT1Q96EB6 747 aa10□□□□□ -0.81
HPS4-209ENST00000466781 SCAND2PQ9GZW5 306 aaPredicted RBP10□□□□□ -0.81
HPS4-209ENST00000466781 MMRN2Q9H8L6 949 aa10□□□□□ -0.81
HPS4-209ENST00000466781 TTC37Q6PGP7 1564 aa10□□□□□ -0.81
HPS4-209ENST00000466781 SAMD9LQ8IVG5 1584 aa10□□□□□ -0.81
HPS4-209ENST00000466781 PRPF4BQ13523 1007 aaKnown RBP10□□□□□ -0.81
HPS4-209ENST00000466781 CCDC183Q5T5S1 534 aa10□□□□□ -0.81
HPS4-209ENST00000466781 TTC16Q8NEE8 873 aa10□□□□□ -0.81
HPS4-209ENST00000466781 SREK1Q8WXA9 508 aaKnown RBP10□□□□□ -0.81
HPS4-209ENST00000466781 SSH1Q8WYL5 1049 aa10□□□□□ -0.81
HPS4-209ENST00000466781 PIK3R4Q99570 1358 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 MFSD6Q6ZSS7 791 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 GIMAP7Q8NHV1 300 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 TBC1D5Q92609 795 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 STX6O43752 255 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 FAM98CQ17RN3 349 aaKnown RBP9.99□□□□□ -0.81
HPS4-209ENST00000466781 CCDC144CPQ8IYA2 1237 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 PTPRCP08575 1304 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 IDEP14735 1019 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 PTPN14Q15678 1187 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 LRSAM1Q6UWE0 723 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 CCDC172P0C7W6 258 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 HOXC9P31274 260 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 COL17A1Q9UMD9 1497 aaPredicted RBP9.99□□□□□ -0.81
HPS4-209ENST00000466781 PREX2Q70Z35 1606 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 TRAF1Q13077 416 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 USP37Q86T82 979 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 MBIPQ9NS73 344 aa9.99□□□□□ -0.81
HPS4-209ENST00000466781 SYCE3A1L190 88 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 NOP2P46087 812 aaKnown RBP9.98□□□□□ -0.81
HPS4-209ENST00000466781 CCT2P78371 535 aaKnown RBP9.98□□□□□ -0.81
HPS4-209ENST00000466781 SLC39A6Q13433 755 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 ZGPATQ8N5A5 531 aaKnown RBP9.98□□□□□ -0.81
HPS4-209ENST00000466781 CPLX3Q8WVH0 158 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 IP6K1Q92551 441 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 EXOC1Q9NV70 894 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 IKBKGQ9Y6K9 419 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms