RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 TMX4Q9H1E5 349 aaPredicted RBP15.23■□□□□ 0.03
SHROOM3-202ENST00000466541 SEC31BQ9NQW1 1179 aa15.23■□□□□ 0.03
SHROOM3-202ENST00000466541 CHMP3Q9Y3E7 222 aa15.23■□□□□ 0.03
SHROOM3-202ENST00000466541 CDHR2Q9BYE9 1310 aa15.22■□□□□ 0.03
SHROOM3-202ENST00000466541 NFKBIEO00221 500 aa15.22■□□□□ 0.03
SHROOM3-202ENST00000466541 ALDH1L1O75891 902 aa15.22■□□□□ 0.03
SHROOM3-202ENST00000466541 CTSWP56202 376 aa15.22■□□□□ 0.03
SHROOM3-202ENST00000466541 GRAPQ13588 217 aa15.22■□□□□ 0.03
SHROOM3-202ENST00000466541 SF3B3Q15393 1217 aaKnown RBP15.22■□□□□ 0.03
SHROOM3-202ENST00000466541 SOGA3Q5TF21 947 aa15.22■□□□□ 0.03
SHROOM3-202ENST00000466541 GRAPLQ8TC17 118 aaPredicted RBP15.22■□□□□ 0.03
SHROOM3-202ENST00000466541 C7orf43Q8WVR3 580 aa15.22■□□□□ 0.03
SHROOM3-202ENST00000466541 FER1L6Q2WGJ9 1857 aa15.22■□□□□ 0.03
SHROOM3-202ENST00000466541 GRM8O00222 908 aa15.21■□□□□ 0.03
SHROOM3-202ENST00000466541 CELF1Q92879 486 aaKnown RBP15.21■□□□□ 0.03
SHROOM3-202ENST00000466541 CLUAP1Q96AJ1 413 aa15.21■□□□□ 0.03
SHROOM3-202ENST00000466541 API5Q9BZZ5 524 aaKnown RBP15.21■□□□□ 0.03
SHROOM3-202ENST00000466541 TAOK3Q9H2K8 898 aa15.21■□□□□ 0.03
SHROOM3-202ENST00000466541 SPEF2Q9C093 1822 aa15.21■□□□□ 0.03
SHROOM3-202ENST00000466541 KIF16BQ96L93 1317 aa15.2■□□□□ 0.02
SHROOM3-202ENST00000466541 IPO8O15397 1037 aaKnown RBP15.2■□□□□ 0.02
SHROOM3-202ENST00000466541 BBOX1O75936 387 aa15.2■□□□□ 0.02
SHROOM3-202ENST00000466541 LMNB1P20700 586 aa15.2■□□□□ 0.02
SHROOM3-202ENST00000466541 PRELPP51888 382 aa15.2■□□□□ 0.02
SHROOM3-202ENST00000466541 CASP7P55210 303 aa15.2■□□□□ 0.02
SHROOM3-202ENST00000466541 RTKN2Q8IZC4 609 aa15.2■□□□□ 0.02
SHROOM3-202ENST00000466541 TTLL11Q8NHH1 800 aa15.2■□□□□ 0.02
SHROOM3-202ENST00000466541 GREM2Q9H772 168 aa15.2■□□□□ 0.02
SHROOM3-202ENST00000466541 ZNF277Q9NRM2 450 aaPredicted RBP15.2■□□□□ 0.02
SHROOM3-202ENST00000466541 TNNQ9UQP3 1299 aa15.2■□□□□ 0.02
SHROOM3-202ENST00000466541 COL4A1P02462 1669 aa15.19■□□□□ 0.02
SHROOM3-202ENST00000466541 RPS8P62241 208 aaKnown RBP15.19■□□□□ 0.02
SHROOM3-202ENST00000466541 ATP6V0A2Q9Y487 856 aa15.19■□□□□ 0.02
SHROOM3-202ENST00000466541 NBPF7P0C2Y1 421 aaPredicted RBP15.18■□□□□ 0.02
SHROOM3-202ENST00000466541 BRPF1P55201 1214 aaPredicted RBP15.18■□□□□ 0.02
SHROOM3-202ENST00000466541 FKBP4Q02790 459 aaKnown RBP eCLIP15.18■□□□□ 0.02
SHROOM3-202ENST00000466541 FAM161AQ3B820 660 aa15.18■□□□□ 0.02
SHROOM3-202ENST00000466541 CCT4P50991 539 aaKnown RBP15.17■□□□□ 0.02
SHROOM3-202ENST00000466541 EPHA10Q5JZY3 1008 aa15.17■□□□□ 0.02
SHROOM3-202ENST00000466541 LMBR1LQ6UX01 489 aa15.17■□□□□ 0.02
SHROOM3-202ENST00000466541 DPP8Q6V1X1 898 aaPredicted RBP15.17■□□□□ 0.02
SHROOM3-202ENST00000466541 ATF7IPQ6VMQ6 1270 aa15.17■□□□□ 0.02
SHROOM3-202ENST00000466541 ANKRD18AQ8IVF6 992 aa15.17■□□□□ 0.02
SHROOM3-202ENST00000466541 SP8Q8IXZ3 490 aa15.17■□□□□ 0.02
SHROOM3-202ENST00000466541 ZNF784Q8NCA9 323 aaPredicted RBP15.17■□□□□ 0.02
SHROOM3-202ENST00000466541 SUCLG2Q96I99 432 aa15.17■□□□□ 0.02
SHROOM3-202ENST00000466541 TRIM27P14373 513 aa15.16■□□□□ 0.02
SHROOM3-202ENST00000466541 ITGA6P23229 1130 aa15.16■□□□□ 0.02
SHROOM3-202ENST00000466541 FOXO4P98177 505 aa15.16■□□□□ 0.02
SHROOM3-202ENST00000466541 ZKSCAN2Q63HK3 967 aa15.16■□□□□ 0.02
SHROOM3-202ENST00000466541 CC2D2BQ6DHV5 1058 aa15.16■□□□□ 0.02
SHROOM3-202ENST00000466541 MPNDQ8N594 471 aa15.16■□□□□ 0.02
SHROOM3-202ENST00000466541 ARHGAP45Q92619 1136 aa15.16■□□□□ 0.02
SHROOM3-202ENST00000466541 CDC5LQ99459 802 aaKnown RBP15.16■□□□□ 0.02
SHROOM3-202ENST00000466541 PLA2G12BQ9BX93 195 aa15.16■□□□□ 0.02
SHROOM3-202ENST00000466541 USP44Q9H0E7 712 aa15.16■□□□□ 0.02
SHROOM3-202ENST00000466541 NSFL1CQ9UNZ2 370 aaKnown RBP15.16■□□□□ 0.02
SHROOM3-202ENST00000466541 TAF7LQ5H9L4 462 aa15.15■□□□□ 0.02
SHROOM3-202ENST00000466541 ANKIB1Q9P2G1 1089 aa15.15■□□□□ 0.02
SHROOM3-202ENST00000466541 DICER1Q9UPY3 1922 aaKnown RBP15.15■□□□□ 0.02
SHROOM3-202ENST00000466541 TIAM2Q8IVF5 1701 aa15.14■□□□□ 0.01
SHROOM3-202ENST00000466541 ANKRD18BA2A2Z9 1011 aa15.14■□□□□ 0.01
SHROOM3-202ENST00000466541 C6orf229H3BNL8 230 aa15.14■□□□□ 0.01
SHROOM3-202ENST00000466541 IGHMBP2P38935 993 aaKnown RBP15.14■□□□□ 0.01
SHROOM3-202ENST00000466541 GPSM2P81274 684 aa15.14■□□□□ 0.01
SHROOM3-202ENST00000466541 IFIT5Q13325 482 aaKnown RBP15.14■□□□□ 0.01
SHROOM3-202ENST00000466541 TMC4Q7Z404 712 aa15.14■□□□□ 0.01
SHROOM3-202ENST00000466541 FTSJ3Q8IY81 847 aaKnown RBP15.14■□□□□ 0.01
SHROOM3-202ENST00000466541 MPHOSPH8Q99549 860 aa15.14■□□□□ 0.01
SHROOM3-202ENST00000466541 BICC1Q9H694 974 aaKnown RBP15.14■□□□□ 0.01
SHROOM3-202ENST00000466541 RCAN3Q9UKA8 241 aa15.14■□□□□ 0.01
SHROOM3-202ENST00000466541 LTBP3Q9NS15 1303 aa15.14■□□□□ 0.01
SHROOM3-202ENST00000466541 CSF1RP07333 972 aa15.13■□□□□ 0.01
SHROOM3-202ENST00000466541 UBTFL1P0CB47 393 aaPredicted RBP15.13■□□□□ 0.01
SHROOM3-202ENST00000466541 IARSP41252 1262 aaKnown RBP15.13■□□□□ 0.01
SHROOM3-202ENST00000466541 LARGE2Q8N3Y3 721 aa15.13■□□□□ 0.01
SHROOM3-202ENST00000466541 ZNF594Q96JF6 807 aaPredicted RBP15.13■□□□□ 0.01
SHROOM3-202ENST00000466541 GPR101Q96P66 508 aaPredicted RBP15.13■□□□□ 0.01
SHROOM3-202ENST00000466541 PSMD1Q99460 953 aa15.13■□□□□ 0.01
SHROOM3-202ENST00000466541 RIMBP2O15034 1052 aa15.12■□□□□ 0.01
SHROOM3-202ENST00000466541 PPIP5K2O43314 1243 aa15.12■□□□□ 0.01
SHROOM3-202ENST00000466541 PLIN1O60240 522 aa15.12■□□□□ 0.01
SHROOM3-202ENST00000466541 AOC3Q16853 763 aa15.12■□□□□ 0.01
SHROOM3-202ENST00000466541 CCDC57Q2TAC2 916 aa15.12■□□□□ 0.01
SHROOM3-202ENST00000466541 GRIPAP1Q4V328 841 aa15.12■□□□□ 0.01
SHROOM3-202ENST00000466541 TMEM57Q8N5G2 664 aa15.12■□□□□ 0.01
SHROOM3-202ENST00000466541 KAZALD1Q96I82 304 aa15.12■□□□□ 0.01
SHROOM3-202ENST00000466541 MEIS3Q99687 375 aa15.12■□□□□ 0.01
SHROOM3-202ENST00000466541 GPBP1L1Q9HC44 474 aaPredicted RBP15.12■□□□□ 0.01
SHROOM3-202ENST00000466541 UTYO14607 1347 aa15.12■□□□□ 0.01
SHROOM3-202ENST00000466541 UFL1O94874 794 aa15.11■□□□□ 0.01
SHROOM3-202ENST00000466541 INTS3Q68E01 1043 aaKnown RBP15.11■□□□□ 0.01
SHROOM3-202ENST00000466541 ITPRIPQ8IWB1 547 aa15.11■□□□□ 0.01
SHROOM3-202ENST00000466541 DZIP1LQ8IYY4 767 aaKnown RBP15.11■□□□□ 0.01
SHROOM3-202ENST00000466541 SUPT20HQ8NEM7 779 aa15.11■□□□□ 0.01
SHROOM3-202ENST00000466541 JDP2Q8WYK2 163 aa15.11■□□□□ 0.01
SHROOM3-202ENST00000466541 LRRC37AA6NMS7 1700 aa15.11■□□□□ 0.01
SHROOM3-202ENST00000466541 RTL9Q8NET4 1388 aa15.11■□□□□ 0.01
SHROOM3-202ENST00000466541 ANKRD44Q8N8A2 993 aa15.1■□□□□ 0.01
SHROOM3-202ENST00000466541 PANK1Q8TE04 598 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms