RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 CWC15Q9P013 229 aaKnown RBP9.12□□□□□ -0.95
USP54-210ENST00000466048 USP42Q9H9J4 1324 aaKnown RBP9.12□□□□□ -0.95
USP54-210ENST00000466048 WDHD1O75717 1129 aaPredicted RBP9.11□□□□□ -0.95
USP54-210ENST00000466048 VPS72Q15906 364 aa9.11□□□□□ -0.95
USP54-210ENST00000466048 CWF19L2Q2TBE0 894 aaKnown RBP9.11□□□□□ -0.95
USP54-210ENST00000466048 USP16Q9Y5T5 823 aa9.11□□□□□ -0.95
USP54-210ENST00000466048 HSPA1LP34931 641 aa9.11□□□□□ -0.95
USP54-210ENST00000466048 LRP6O75581 1613 aa9.11□□□□□ -0.95
USP54-210ENST00000466048 K7ELQ4 463 aaPredicted RBP9.11□□□□□ -0.95
USP54-210ENST00000466048 SEPT12Q8IYM1 358 aa9.11□□□□□ -0.95
USP54-210ENST00000466048 IL1RAPL2Q9NP60 686 aa9.11□□□□□ -0.95
USP54-210ENST00000466048 TNS2Q63HR2 1409 aa9.11□□□□□ -0.95
USP54-210ENST00000466048 DZIP3Q86Y13 1208 aaKnown RBP9.11□□□□□ -0.95
USP54-210ENST00000466048 SUCLG2Q96I99 432 aa9.11□□□□□ -0.95
USP54-210ENST00000466048 USP26Q9BXU7 913 aa9.11□□□□□ -0.95
USP54-210ENST00000466048 CCDC87Q9NVE4 849 aa9.11□□□□□ -0.95
USP54-210ENST00000466048 CCDC39Q9UFE4 941 aa9.11□□□□□ -0.95
USP54-210ENST00000466048 ATP6V1DQ9Y5K8 247 aa9.11□□□□□ -0.95
USP54-210ENST00000466048 PRAMEF22A3QJZ6 481 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 ZKSCAN1P17029 563 aaPredicted RBP9.1□□□□□ -0.95
USP54-210ENST00000466048 PRIM1P49642 420 aaKnown RBP9.1□□□□□ -0.95
USP54-210ENST00000466048 AACSQ86V21 672 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 TICAM2Q86XR7 235 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 OTUD7AQ8TE49 926 aaPredicted RBP9.1□□□□□ -0.95
USP54-210ENST00000466048 EVI5LQ96CN4 794 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 ESYT1Q9BSJ8 1104 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 BICC1Q9H694 974 aaKnown RBP9.1□□□□□ -0.95
USP54-210ENST00000466048 C5P01031 1676 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 SALL3Q9BXA9 1300 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 CCDC173Q0VFZ6 552 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 WASHC4Q2M389 1173 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 TTC39AQ5SRH9 613 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 NUTM1Q86Y26 1132 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 GJD4Q96KN9 370 aaPredicted RBP9.1□□□□□ -0.95
USP54-210ENST00000466048 UTP14AQ9BVJ6 771 aaKnown RBP9.1□□□□□ -0.95
USP54-210ENST00000466048 BRPF3Q9ULD4 1205 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 GNPATO15228 680 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 TSPYL1Q9H0U9 437 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 COPRSQ9NQ92 184 aa9.1□□□□□ -0.95
USP54-210ENST00000466048 PLCH1Q4KWH8 1693 aa9.09□□□□□ -0.95
USP54-210ENST00000466048 IGKV5-2P06315 115 aa9.09□□□□□ -0.95
USP54-210ENST00000466048 CHMLP26374 656 aa9.09□□□□□ -0.95
USP54-210ENST00000466048 CCDC34Q96HJ3 373 aa9.09□□□□□ -0.95
USP54-210ENST00000466048 EYA3Q99504 573 aa9.09□□□□□ -0.95
USP54-210ENST00000466048 CWC22Q9HCG8 908 aaKnown RBP9.09□□□□□ -0.95
USP54-210ENST00000466048 ANO2Q9NQ90 1003 aa9.09□□□□□ -0.95
USP54-210ENST00000466048 ARGLU1Q9NWB6 273 aaPredicted RBP9.09□□□□□ -0.95
USP54-210ENST00000466048 FBXO3Q9UK99 471 aa9.09□□□□□ -0.95
USP54-210ENST00000466048 PHLPP1O60346 1717 aa9.09□□□□□ -0.95
USP54-210ENST00000466048 SLC5A1P13866 664 aa9.09□□□□□ -0.95
USP54-210ENST00000466048 NLGN1Q8N2Q7 840 aa9.09□□□□□ -0.95
USP54-210ENST00000466048 PAPPAQ13219 1627 aa9.09□□□□□ -0.95
USP54-210ENST00000466048 RAD50Q92878 1312 aa9.09□□□□□ -0.95
USP54-210ENST00000466048 TULP1O00294 542 aaPredicted RBP9.08□□□□□ -0.96
USP54-210ENST00000466048 CCDC125Q86Z20 511 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 ATG3Q9NT62 314 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 DISP2A7MBM2 1401 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 UBE3BQ7Z3V4 1068 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 NACAP1Q9BZK3 213 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 PDCL3Q9H2J4 239 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 LDHCP07864 332 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 GNL2Q13823 731 aaKnown RBP9.08□□□□□ -0.96
USP54-210ENST00000466048 METTL24Q5JXM2 366 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 ZBTB3Q9H5J0 574 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 ZNF219Q9P2Y4 722 aaPredicted RBP9.08□□□□□ -0.96
USP54-210ENST00000466048 UBR2Q8IWV8 1755 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 ERICH2A1L162 156 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 RAD21O60216 631 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 NUCB2P80303 420 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 NIP7Q9Y221 180 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP54-210ENST00000466048 KCPQ6ZWJ8 1503 aa9.08□□□□□ -0.96
USP54-210ENST00000466048 KAT6BQ8WYB5 2073 aa9.07□□□□□ -0.96
USP54-210ENST00000466048 H7C1W4 665 aa9.07□□□□□ -0.96
USP54-210ENST00000466048 RABL6Q3YEC7 729 aaPredicted RBP9.07□□□□□ -0.96
USP54-210ENST00000466048 SUPT20HQ8NEM7 779 aa9.07□□□□□ -0.96
USP54-210ENST00000466048 LTBP4Q8N2S1 1624 aa9.07□□□□□ -0.96
USP54-210ENST00000466048 IL15P40933 162 aaPredicted RBP9.07□□□□□ -0.96
USP54-210ENST00000466048 AKAP17AQ02040 695 aaKnown RBP9.07□□□□□ -0.96
USP54-210ENST00000466048 TRIM28Q13263 835 aaKnown RBP9.07□□□□□ -0.96
USP54-210ENST00000466048 SPTY2D1Q68D10 685 aaPredicted RBP9.07□□□□□ -0.96
USP54-210ENST00000466048 ZNF287Q9HBT7 754 aa9.07□□□□□ -0.96
USP54-210ENST00000466048 GPR108Q9NPR9 543 aa9.07□□□□□ -0.96
USP54-210ENST00000466048 TCIRG1Q13488 830 aa9.07□□□□□ -0.96
USP54-210ENST00000466048 BARGINQ6ZT62 677 aa9.07□□□□□ -0.96
USP54-210ENST00000466048 ZNF622Q969S3 477 aaKnown RBP eCLIP9.07□□□□□ -0.96
USP54-210ENST00000466048 ANKIB1Q9P2G1 1089 aa9.07□□□□□ -0.96
USP54-210ENST00000466048 SOGA3Q5TF21 947 aa9.07□□□□□ -0.96
USP54-210ENST00000466048 ANKRD18AQ8IVF6 992 aa9.07□□□□□ -0.96
USP54-210ENST00000466048 ZGPATQ8N5A5 531 aaKnown RBP9.06□□□□□ -0.96
USP54-210ENST00000466048 PIGBQ92521 554 aa9.06□□□□□ -0.96
USP54-210ENST00000466048 RBM17Q96I25 401 aaKnown RBP9.06□□□□□ -0.96
USP54-210ENST00000466048 ANKRD2Q9GZV1 360 aa9.06□□□□□ -0.96
USP54-210ENST00000466048 R3HCC1Q9Y3T6 440 aaKnown RBP9.06□□□□□ -0.96
USP54-210ENST00000466048 SPATA31A1Q5TZJ5 1347 aa9.06□□□□□ -0.96
USP54-210ENST00000466048 RFX7Q2KHR2 1363 aa9.06□□□□□ -0.96
USP54-210ENST00000466048 TPRNQ4KMQ1 711 aa9.06□□□□□ -0.96
USP54-210ENST00000466048 SLC27A3Q5K4L6 730 aa9.06□□□□□ -0.96
USP54-210ENST00000466048 ACBD3Q9H3P7 528 aa9.06□□□□□ -0.96
USP54-210ENST00000466048 ATP5J2-PTCD1G3V325 749 aa9.06□□□□□ -0.96
USP54-210ENST00000466048 CIAO1O76071 339 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms