RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 CELF1Q92879 486 aaKnown RBP14.78□□□□□ -0.04
CUX1-207ENST00000465461 UTRNP46939 3433 aa14.78□□□□□ -0.04
CUX1-207ENST00000465461 CHD4Q14839 1912 aa14.78□□□□□ -0.04
CUX1-207ENST00000465461 ALDH1L1O75891 902 aa14.77□□□□□ -0.05
CUX1-207ENST00000465461 GRAPQ13588 217 aa14.77□□□□□ -0.05
CUX1-207ENST00000465461 EPHA10Q5JZY3 1008 aa14.77□□□□□ -0.05
CUX1-207ENST00000465461 GRAPLQ8TC17 118 aaPredicted RBP14.77□□□□□ -0.05
CUX1-207ENST00000465461 C9orf78Q9NZ63 289 aaPredicted RBP14.77□□□□□ -0.05
CUX1-207ENST00000465461 GRM8O00222 908 aa14.76□□□□□ -0.05
CUX1-207ENST00000465461 NBPF7P0C2Y1 421 aaPredicted RBP14.76□□□□□ -0.05
CUX1-207ENST00000465461 CTSWP56202 376 aa14.76□□□□□ -0.05
CUX1-207ENST00000465461 CCDC93Q567U6 631 aa14.76□□□□□ -0.05
CUX1-207ENST00000465461 C9orf131Q5VYM1 1079 aa14.76□□□□□ -0.05
CUX1-207ENST00000465461 TTLL11Q8NHH1 800 aa14.76□□□□□ -0.05
CUX1-207ENST00000465461 CLUAP1Q96AJ1 413 aa14.76□□□□□ -0.05
CUX1-207ENST00000465461 API5Q9BZZ5 524 aaKnown RBP14.76□□□□□ -0.05
CUX1-207ENST00000465461 GREM2Q9H772 168 aa14.76□□□□□ -0.05
CUX1-207ENST00000465461 FOXO4P98177 505 aa14.75□□□□□ -0.05
CUX1-207ENST00000465461 CCDC152Q4G0S7 254 aa14.75□□□□□ -0.05
CUX1-207ENST00000465461 SUCLG2Q96I99 432 aa14.75□□□□□ -0.05
CUX1-207ENST00000465461 RNF181Q9P0P0 153 aa14.75□□□□□ -0.05
CUX1-207ENST00000465461 FER1L6Q2WGJ9 1857 aa14.74□□□□□ -0.05
CUX1-207ENST00000465461 KIF16BQ96L93 1317 aa14.74□□□□□ -0.05
CUX1-207ENST00000465461 BBOX1O75936 387 aa14.74□□□□□ -0.05
CUX1-207ENST00000465461 TRIM27P14373 513 aa14.74□□□□□ -0.05
CUX1-207ENST00000465461 HSP90B1P14625 803 aaKnown RBP14.74□□□□□ -0.05
CUX1-207ENST00000465461 PLA2G12BQ9BX93 195 aa14.74□□□□□ -0.05
CUX1-207ENST00000465461 TAOK3Q9H2K8 898 aa14.74□□□□□ -0.05
CUX1-207ENST00000465461 ZNF277Q9NRM2 450 aaPredicted RBP14.74□□□□□ -0.05
CUX1-207ENST00000465461 ATP6V0A2Q9Y487 856 aa14.74□□□□□ -0.05
CUX1-207ENST00000465461 SBF1O95248 1867 aa14.74□□□□□ -0.05
CUX1-207ENST00000465461 RPS8P62241 208 aaKnown RBP14.73□□□□□ -0.05
CUX1-207ENST00000465461 FAM161AQ3B820 660 aa14.73□□□□□ -0.05
CUX1-207ENST00000465461 SOGA3Q5TF21 947 aa14.73□□□□□ -0.05
CUX1-207ENST00000465461 ATF7IPQ6VMQ6 1270 aa14.73□□□□□ -0.05
CUX1-207ENST00000465461 SP8Q8IXZ3 490 aa14.73□□□□□ -0.05
CUX1-207ENST00000465461 ARHGAP45Q92619 1136 aa14.73□□□□□ -0.05
CUX1-207ENST00000465461 KAZALD1Q96I82 304 aa14.73□□□□□ -0.05
CUX1-207ENST00000465461 USP44Q9H0E7 712 aa14.73□□□□□ -0.05
CUX1-207ENST00000465461 CHMP3Q9Y3E7 222 aa14.73□□□□□ -0.05
CUX1-207ENST00000465461 CCDC88AQ3V6T2 1871 aa14.73□□□□□ -0.05
CUX1-207ENST00000465461 IPO8O15397 1037 aaKnown RBP14.72□□□□□ -0.05
CUX1-207ENST00000465461 CSF1RP07333 972 aa14.72□□□□□ -0.05
CUX1-207ENST00000465461 LMNB1P20700 586 aa14.72□□□□□ -0.05
CUX1-207ENST00000465461 CCT4P50991 539 aaKnown RBP14.72□□□□□ -0.05
CUX1-207ENST00000465461 FKBP4Q02790 459 aaKnown RBP eCLIP14.72□□□□□ -0.05
CUX1-207ENST00000465461 ZKSCAN2Q63HK3 967 aa14.72□□□□□ -0.05
CUX1-207ENST00000465461 LMBR1LQ6UX01 489 aa14.72□□□□□ -0.05
CUX1-207ENST00000465461 RTKN2Q8IZC4 609 aa14.72□□□□□ -0.05
CUX1-207ENST00000465461 ZNF526Q8TF50 670 aaPredicted RBP14.72□□□□□ -0.05
CUX1-207ENST00000465461 SNED1Q8TER0 1413 aa14.72□□□□□ -0.05
CUX1-207ENST00000465461 MYH3P11055 1940 aa14.72□□□□□ -0.05
CUX1-207ENST00000465461 UTYO14607 1347 aa14.71□□□□□ -0.05
CUX1-207ENST00000465461 ITGA6P23229 1130 aa14.71□□□□□ -0.05
CUX1-207ENST00000465461 GPSM2P81274 684 aa14.71□□□□□ -0.05
CUX1-207ENST00000465461 RCAN3Q9UKA8 241 aa14.71□□□□□ -0.05
CUX1-207ENST00000465461 PLIN1O60240 522 aa14.7□□□□□ -0.06
CUX1-207ENST00000465461 ANKRD18AQ8IVF6 992 aa14.7□□□□□ -0.06
CUX1-207ENST00000465461 MPNDQ8N594 471 aa14.7□□□□□ -0.06
CUX1-207ENST00000465461 TMEM57Q8N5G2 664 aa14.7□□□□□ -0.06
CUX1-207ENST00000465461 ZNF594Q96JF6 807 aaPredicted RBP14.7□□□□□ -0.06
CUX1-207ENST00000465461 TMX4Q9H1E5 349 aaPredicted RBP14.7□□□□□ -0.06
CUX1-207ENST00000465461 BICC1Q9H694 974 aaKnown RBP14.7□□□□□ -0.06
CUX1-207ENST00000465461 NSFL1CQ9UNZ2 370 aaKnown RBP14.7□□□□□ -0.06
CUX1-207ENST00000465461 LTBP3Q9NS15 1303 aa14.69□□□□□ -0.06
CUX1-207ENST00000465461 SPEF2Q9C093 1822 aa14.69□□□□□ -0.06
CUX1-207ENST00000465461 RLBP1P12271 317 aa14.69□□□□□ -0.06
CUX1-207ENST00000465461 INTS3Q68E01 1043 aaKnown RBP14.69□□□□□ -0.06
CUX1-207ENST00000465461 CC2D2BQ6DHV5 1058 aa14.69□□□□□ -0.06
CUX1-207ENST00000465461 DPP8Q6V1X1 898 aaPredicted RBP14.69□□□□□ -0.06
CUX1-207ENST00000465461 ZNF784Q8NCA9 323 aaPredicted RBP14.69□□□□□ -0.06
CUX1-207ENST00000465461 GPR101Q96P66 508 aaPredicted RBP14.69□□□□□ -0.06
CUX1-207ENST00000465461 MEIS3Q99687 375 aa14.69□□□□□ -0.06
CUX1-207ENST00000465461 ANKRD18BA2A2Z9 1011 aa14.68□□□□□ -0.06
CUX1-207ENST00000465461 WTIPA6NIX2 430 aaPredicted RBP14.68□□□□□ -0.06
CUX1-207ENST00000465461 IARSP41252 1262 aaKnown RBP14.68□□□□□ -0.06
CUX1-207ENST00000465461 ANKRD44Q8N8A2 993 aa14.68□□□□□ -0.06
CUX1-207ENST00000465461 CDC5LQ99459 802 aaKnown RBP14.68□□□□□ -0.06
CUX1-207ENST00000465461 PSMD1Q99460 953 aa14.68□□□□□ -0.06
CUX1-207ENST00000465461 UBTFL1P0CB47 393 aaPredicted RBP14.67□□□□□ -0.06
CUX1-207ENST00000465461 IFIT5Q13325 482 aaKnown RBP14.67□□□□□ -0.06
CUX1-207ENST00000465461 AOC3Q16853 763 aa14.67□□□□□ -0.06
CUX1-207ENST00000465461 DZIP1LQ8IYY4 767 aaKnown RBP14.67□□□□□ -0.06
CUX1-207ENST00000465461 PANK1Q8TE04 598 aa14.67□□□□□ -0.06
CUX1-207ENST00000465461 POLLQ9UGP5 575 aa14.67□□□□□ -0.06
CUX1-207ENST00000465461 RTL9Q8NET4 1388 aa14.67□□□□□ -0.06
CUX1-207ENST00000465461 COL4A5P29400 1685 aa14.67□□□□□ -0.06
CUX1-207ENST00000465461 C6orf229H3BNL8 230 aa14.66□□□□□ -0.06
CUX1-207ENST00000465461 RIMBP2O15034 1052 aa14.66□□□□□ -0.06
CUX1-207ENST00000465461 IGHMBP2P38935 993 aaKnown RBP14.66□□□□□ -0.06
CUX1-207ENST00000465461 CCDC57Q2TAC2 916 aa14.66□□□□□ -0.06
CUX1-207ENST00000465461 TMC4Q7Z404 712 aa14.66□□□□□ -0.06
CUX1-207ENST00000465461 FTSJ3Q8IY81 847 aaKnown RBP14.66□□□□□ -0.06
CUX1-207ENST00000465461 BSDC1Q9NW68 430 aaPredicted RBP14.66□□□□□ -0.06
CUX1-207ENST00000465461 MINPP1Q9UNW1 487 aa14.66□□□□□ -0.06
CUX1-207ENST00000465461 LRRFIP2Q9Y608 721 aaKnown RBP14.66□□□□□ -0.06
CUX1-207ENST00000465461 LRRC37AA6NMS7 1700 aa14.66□□□□□ -0.06
CUX1-207ENST00000465461 DUOX1Q9NRD9 1551 aa14.65□□□□□ -0.06
CUX1-207ENST00000465461 PPIP5K2O43314 1243 aa14.65□□□□□ -0.06
CUX1-207ENST00000465461 RABL6Q3YEC7 729 aaPredicted RBP14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms