RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 LRRC37AA6NMS7 1700 aa17.32■□□□□ 0.36
LIMD1-203ENST00000465039 FER1L6Q2WGJ9 1857 aa17.31■□□□□ 0.36
LIMD1-203ENST00000465039 GRAPQ13588 217 aa17.31■□□□□ 0.36
LIMD1-203ENST00000465039 ZKSCAN2Q63HK3 967 aa17.31■□□□□ 0.36
LIMD1-203ENST00000465039 INTS3Q68E01 1043 aaKnown RBP17.31■□□□□ 0.36
LIMD1-203ENST00000465039 GRAPLQ8TC17 118 aaPredicted RBP17.31■□□□□ 0.36
LIMD1-203ENST00000465039 C9orf78Q9NZ63 289 aaPredicted RBP17.31■□□□□ 0.36
LIMD1-203ENST00000465039 CACNA1SQ13698 1873 aa17.31■□□□□ 0.36
LIMD1-203ENST00000465039 SNED1Q8TER0 1413 aa17.3■□□□□ 0.36
LIMD1-203ENST00000465039 ZC3H4Q9UPT8 1303 aaKnown RBP17.3■□□□□ 0.36
LIMD1-203ENST00000465039 MS4A1P11836 297 aa17.3■□□□□ 0.36
LIMD1-203ENST00000465039 TRIM27P14373 513 aa17.3■□□□□ 0.36
LIMD1-203ENST00000465039 CCDC93Q567U6 631 aa17.3■□□□□ 0.36
LIMD1-203ENST00000465039 RTKN2Q8IZC4 609 aa17.3■□□□□ 0.36
LIMD1-203ENST00000465039 BCAR3O75815 825 aa17.29■□□□□ 0.36
LIMD1-203ENST00000465039 TMX4Q9H1E5 349 aaPredicted RBP17.29■□□□□ 0.36
LIMD1-203ENST00000465039 RCAN3Q9UKA8 241 aa17.29■□□□□ 0.36
LIMD1-203ENST00000465039 ATP6V0A2Q9Y487 856 aa17.29■□□□□ 0.36
LIMD1-203ENST00000465039 PPEF1O14829 653 aaPredicted RBP17.28■□□□□ 0.36
LIMD1-203ENST00000465039 CSF1RP07333 972 aa17.28■□□□□ 0.36
LIMD1-203ENST00000465039 RTL5Q5HYW3 569 aaPredicted RBP17.28■□□□□ 0.36
LIMD1-203ENST00000465039 TTLL11Q8NHH1 800 aa17.28■□□□□ 0.36
LIMD1-203ENST00000465039 CDC5LQ99459 802 aaKnown RBP17.28■□□□□ 0.36
LIMD1-203ENST00000465039 C21orf2O43822 256 aa17.27■□□□□ 0.36
LIMD1-203ENST00000465039 PSMD1Q99460 953 aa17.27■□□□□ 0.36
LIMD1-203ENST00000465039 ARHGAP27Q6ZUM4 889 aa17.26■□□□□ 0.35
LIMD1-203ENST00000465039 SP8Q8IXZ3 490 aa17.26■□□□□ 0.35
LIMD1-203ENST00000465039 FRAT1Q92837 279 aaPredicted RBP17.26■□□□□ 0.35
LIMD1-203ENST00000465039 USP44Q9H0E7 712 aa17.26■□□□□ 0.35
LIMD1-203ENST00000465039 VPS33BQ9H267 617 aa17.26■□□□□ 0.35
LIMD1-203ENST00000465039 TAOK3Q9H2K8 898 aa17.26■□□□□ 0.35
LIMD1-203ENST00000465039 NFKBIEO00221 500 aa17.25■□□□□ 0.35
LIMD1-203ENST00000465039 RPS8P62241 208 aaKnown RBP17.25■□□□□ 0.35
LIMD1-203ENST00000465039 RABL6Q3YEC7 729 aaPredicted RBP17.25■□□□□ 0.35
LIMD1-203ENST00000465039 WWC3Q9ULE0 1092 aa17.25■□□□□ 0.35
LIMD1-203ENST00000465039 SBF1O95248 1867 aa17.24■□□□□ 0.35
LIMD1-203ENST00000465039 GNAI3P08754 354 aa17.24■□□□□ 0.35
LIMD1-203ENST00000465039 NBPF7P0C2Y1 421 aaPredicted RBP17.24■□□□□ 0.35
LIMD1-203ENST00000465039 LMNB1P20700 586 aa17.24■□□□□ 0.35
LIMD1-203ENST00000465039 FOXO4P98177 505 aa17.24■□□□□ 0.35
LIMD1-203ENST00000465039 FKBP4Q02790 459 aaKnown RBP eCLIP17.24■□□□□ 0.35
LIMD1-203ENST00000465039 FTSJ3Q8IY81 847 aaKnown RBP17.24■□□□□ 0.35
LIMD1-203ENST00000465039 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.24■□□□□ 0.35
LIMD1-203ENST00000465039 UBTFL1P0CB47 393 aaPredicted RBP17.23■□□□□ 0.35
LIMD1-203ENST00000465039 ANKRD18AQ8IVF6 992 aa17.23■□□□□ 0.35
LIMD1-203ENST00000465039 DZIP1LQ8IYY4 767 aaKnown RBP17.23■□□□□ 0.35
LIMD1-203ENST00000465039 SUPT20HQ8NEM7 779 aa17.23■□□□□ 0.35
LIMD1-203ENST00000465039 RTFDC1Q9BY42 306 aaPredicted RBP17.23■□□□□ 0.35
LIMD1-203ENST00000465039 GREM2Q9H772 168 aa17.23■□□□□ 0.35
LIMD1-203ENST00000465039 LTBP1Q14766 1721 aa17.23■□□□□ 0.35
LIMD1-203ENST00000465039 DICER1Q9UPY3 1922 aaKnown RBP17.23■□□□□ 0.35
LIMD1-203ENST00000465039 JARID2Q92833 1246 aaPredicted RBP17.22■□□□□ 0.35
LIMD1-203ENST00000465039 CELF1Q92879 486 aaKnown RBP17.22■□□□□ 0.35
LIMD1-203ENST00000465039 YTHDC1Q96MU7 727 aaKnown RBP17.22■□□□□ 0.35
LIMD1-203ENST00000465039 BSDC1Q9NW68 430 aaPredicted RBP17.22■□□□□ 0.35
LIMD1-203ENST00000465039 ANKRD18BA2A2Z9 1011 aa17.21■□□□□ 0.35
LIMD1-203ENST00000465039 ITGA6P23229 1130 aa17.21■□□□□ 0.35
LIMD1-203ENST00000465039 IFIT5Q13325 482 aaKnown RBP17.21■□□□□ 0.35
LIMD1-203ENST00000465039 FAM161AQ3B820 660 aa17.21■□□□□ 0.35
LIMD1-203ENST00000465039 KAZALD1Q96I82 304 aa17.21■□□□□ 0.35
LIMD1-203ENST00000465039 PODXL2Q9NZ53 605 aa17.21■□□□□ 0.35
LIMD1-203ENST00000465039 IGHMBP2P38935 993 aaKnown RBP17.2■□□□□ 0.34
LIMD1-203ENST00000465039 PDE3AQ14432 1141 aa17.2■□□□□ 0.34
LIMD1-203ENST00000465039 CCDC57Q2TAC2 916 aa17.2■□□□□ 0.34
LIMD1-203ENST00000465039 LMBR1LQ6UX01 489 aa17.2■□□□□ 0.34
LIMD1-203ENST00000465039 SUCLG2Q96I99 432 aa17.2■□□□□ 0.34
LIMD1-203ENST00000465039 SEC31BQ9NQW1 1179 aa17.2■□□□□ 0.34
LIMD1-203ENST00000465039 TAF1P21675 1872 aa17.2■□□□□ 0.34
LIMD1-203ENST00000465039 DUOX1Q9NRD9 1551 aa17.19■□□□□ 0.34
LIMD1-203ENST00000465039 TIAM2Q8IVF5 1701 aa17.19■□□□□ 0.34
LIMD1-203ENST00000465039 CHMP4BQ9H444 224 aaKnown RBP17.19■□□□□ 0.34
LIMD1-203ENST00000465039 COL4A1P02462 1669 aa17.19■□□□□ 0.34
LIMD1-203ENST00000465039 MTX1Q13505 466 aa17.18■□□□□ 0.34
LIMD1-203ENST00000465039 EPHA10Q5JZY3 1008 aa17.18■□□□□ 0.34
LIMD1-203ENST00000465039 C9orf131Q5VYM1 1079 aa17.18■□□□□ 0.34
LIMD1-203ENST00000465039 DPP8Q6V1X1 898 aaPredicted RBP17.18■□□□□ 0.34
LIMD1-203ENST00000465039 MPNDQ8N594 471 aa17.18■□□□□ 0.34
LIMD1-203ENST00000465039 TMEM57Q8N5G2 664 aa17.18■□□□□ 0.34
LIMD1-203ENST00000465039 ANKRD44Q8N8A2 993 aa17.18■□□□□ 0.34
LIMD1-203ENST00000465039 BICC1Q9H694 974 aaKnown RBP17.18■□□□□ 0.34
LIMD1-203ENST00000465039 XDHP47989 1333 aa17.18■□□□□ 0.34
LIMD1-203ENST00000465039 YY1P25490 414 aa17.17■□□□□ 0.34
LIMD1-203ENST00000465039 RASSF7Q02833 373 aa17.17■□□□□ 0.34
LIMD1-203ENST00000465039 CLUAP1Q96AJ1 413 aa17.17■□□□□ 0.34
LIMD1-203ENST00000465039 MPHOSPH8Q99549 860 aa17.17■□□□□ 0.34
LIMD1-203ENST00000465039 MEIS3Q99687 375 aa17.17■□□□□ 0.34
LIMD1-203ENST00000465039 ANKRD2Q9GZV1 360 aa17.17■□□□□ 0.34
LIMD1-203ENST00000465039 RNF181Q9P0P0 153 aa17.17■□□□□ 0.34
LIMD1-203ENST00000465039 ZNF219Q9P2Y4 722 aaPredicted RBP17.17■□□□□ 0.34
LIMD1-203ENST00000465039 FBXO3Q9UK99 471 aa17.17■□□□□ 0.34
LIMD1-203ENST00000465039 IARSP41252 1262 aaKnown RBP17.16■□□□□ 0.34
LIMD1-203ENST00000465039 CCDC88AQ3V6T2 1871 aa17.16■□□□□ 0.34
LIMD1-203ENST00000465039 GNAI2P04899 355 aa17.15■□□□□ 0.34
LIMD1-203ENST00000465039 RLBP1P12271 317 aa17.15■□□□□ 0.34
LIMD1-203ENST00000465039 KIAA2012Q0VF49 1180 aa17.15■□□□□ 0.34
LIMD1-203ENST00000465039 OLFM4Q6UX06 510 aa17.15■□□□□ 0.34
LIMD1-203ENST00000465039 CCDC85AQ96PX6 553 aaPredicted RBP17.15■□□□□ 0.34
LIMD1-203ENST00000465039 EYA3Q99504 573 aa17.15■□□□□ 0.34
LIMD1-203ENST00000465039 DDX19BQ9UMR2 479 aa17.15■□□□□ 0.34
LIMD1-203ENST00000465039 SPEF2Q9C093 1822 aa17.14■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms