RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 CRHR2Q13324 411 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 AAK1Q2M2I8 961 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 TBC1D9BQ66K14 1250 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 IFNL2Q8IZJ0 200 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 PPM1EQ8WY54 764 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 FBXL18Q96ME1 805 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 VPS33BQ9H267 617 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 TSPYL2Q9H2G4 693 aaPredicted RBP3.81□□□□□ -1.8
USP40-211ENST00000464956 BCL2L12Q9HB09 334 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 BIN2Q9UBW5 565 aaPredicted RBP3.81□□□□□ -1.8
USP40-211ENST00000464956 DICER1Q9UPY3 1922 aaKnown RBP3.81□□□□□ -1.8
USP40-211ENST00000464956 FER1L6Q2WGJ9 1857 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 KIF24Q5T7B8 1368 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 RAB3GAP2Q9H2M9 1393 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 VCANP13611 3396 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 A0A087WZG4 1122 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 ERVV-2B6SEH9 535 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 SGPL1O95470 568 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 TFRCP02786 760 aaKnown RBP3.8□□□□□ -1.8
USP40-211ENST00000464956 NF2P35240 595 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 AOC3Q16853 763 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 CSPP1Q1MSJ5 1256 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 TBC1D10BQ4KMP7 808 aaPredicted RBP3.8□□□□□ -1.8
USP40-211ENST00000464956 SPRYD7Q5W111 196 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 NECAB2Q7Z6G3 386 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 NUTM1Q86Y26 1132 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 SETDB2Q96T68 719 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 TMX4Q9H1E5 349 aaPredicted RBP3.8□□□□□ -1.8
USP40-211ENST00000464956 C11orf16Q9NQ32 467 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 GGA3Q9NZ52 723 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 RGPD5Q99666 1765 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 DLEC1Q9Y238 1755 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 PIEZO1Q92508 2521 aa3.8□□□□□ -1.8
USP40-211ENST00000464956 TONSLQ96HA7 1378 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 EVC2Q86UK5 1308 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 CENPJQ9HC77 1338 aaPredicted RBP3.79□□□□□ -1.8
USP40-211ENST00000464956 FAM208AQ9UK61 1670 aaKnown RBP3.79□□□□□ -1.8
USP40-211ENST00000464956 SHTN1A0MZ66 631 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 PRAMEF22A3QJZ6 481 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 IGF2BP3O00425 579 aaKnown RBP eCLIP3.79□□□□□ -1.8
USP40-211ENST00000464956 GFRA3O60609 400 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 RAD17O75943 681 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 PHKG2P15735 406 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 GRK4P32298 578 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 CABP4P57796 275 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 SMAD3P84022 425 aaKnown RBP3.79□□□□□ -1.8
USP40-211ENST00000464956 MDM2Q00987 491 aaPredicted RBP3.79□□□□□ -1.8
USP40-211ENST00000464956 KIF4BQ2VIQ3 1234 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 RBM26Q5T8P6 1007 aaKnown RBP3.79□□□□□ -1.8
USP40-211ENST00000464956 MOB2Q70IA6 237 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 ARMC9Q7Z3E5 817 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 SUPT20HQ8NEM7 779 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 RAET1EQ8TD07 263 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 DPF2Q92785 391 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 PAWRQ96IZ0 340 aaKnown RBP3.79□□□□□ -1.8
USP40-211ENST00000464956 TRIM47Q96LD4 638 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 STAC3Q96MF2 364 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 LBHD1Q9BQE6 289 aaPredicted RBP3.79□□□□□ -1.8
USP40-211ENST00000464956 TTYH1Q9H313 450 aaPredicted RBP3.79□□□□□ -1.8
USP40-211ENST00000464956 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.79□□□□□ -1.8
USP40-211ENST00000464956 KDM2AQ9Y2K7 1162 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 MAP2P11137 1827 aaKnown RBP3.79□□□□□ -1.8
USP40-211ENST00000464956 BCORQ6W2J9 1755 aa3.79□□□□□ -1.8
USP40-211ENST00000464956 MON2Q7Z3U7 1717 aa3.78□□□□□ -1.8
USP40-211ENST00000464956 RTL1A6NKG5 1358 aa3.78□□□□□ -1.8
USP40-211ENST00000464956 AKAP11Q9UKA4 1901 aa3.78□□□□□ -1.8
USP40-211ENST00000464956 CCDC88AQ3V6T2 1871 aa3.78□□□□□ -1.8
USP40-211ENST00000464956 KLRG2A4D1S0 409 aaPredicted RBP3.78□□□□□ -1.8
USP40-211ENST00000464956 PI4K2BG5E9Z4 385 aa3.78□□□□□ -1.8
USP40-211ENST00000464956 WDHD1O75717 1129 aaPredicted RBP3.78□□□□□ -1.8
USP40-211ENST00000464956 HSP90AB1P08238 724 aaKnown RBP3.78□□□□□ -1.8
USP40-211ENST00000464956 ZBTB48P10074 688 aaPredicted RBP3.78□□□□□ -1.8
USP40-211ENST00000464956 BMP1P13497 986 aa3.78□□□□□ -1.8
USP40-211ENST00000464956 HOXD10P28358 340 aa3.78□□□□□ -1.8
USP40-211ENST00000464956 ID4P47928 161 aa3.78□□□□□ -1.8
USP40-211ENST00000464956 CAP1Q01518 475 aa3.78□□□□□ -1.8
USP40-211ENST00000464956 AKNAD1Q5T1N1 836 aa3.78□□□□□ -1.8
USP40-211ENST00000464956 NPM2Q86SE8 214 aaKnown RBP3.78□□□□□ -1.8
USP40-211ENST00000464956 NBPF5PQ86XG9 351 aaPredicted RBP3.78□□□□□ -1.8
USP40-211ENST00000464956 GAS2L1Q99501 681 aaPredicted RBP3.78□□□□□ -1.8
USP40-211ENST00000464956 ZFYVE28Q9HCC9 887 aa3.78□□□□□ -1.8
USP40-211ENST00000464956 RIPOR2Q9Y4F9 1068 aa3.78□□□□□ -1.8
USP40-211ENST00000464956 COL2A1P02458 1487 aaPredicted RBP3.78□□□□□ -1.8
USP40-211ENST00000464956 NRXN2Q9P2S2 1712 aa3.78□□□□□ -1.8
USP40-211ENST00000464956 KIAA0100Q14667 2235 aaKnown RBP3.78□□□□□ -1.8
USP40-211ENST00000464956 RANBP2P49792 3224 aaKnown RBP3.78□□□□□ -1.81
USP40-211ENST00000464956 SPTBN5Q9NRC6 3674 aaKnown RBP3.77□□□□□ -1.81
USP40-211ENST00000464956 EGFRP00533 1210 aa3.77□□□□□ -1.81
USP40-211ENST00000464956 RPS12P25398 132 aaKnown RBP3.77□□□□□ -1.81
USP40-211ENST00000464956 CANXP27824 592 aaKnown RBP3.77□□□□□ -1.81
USP40-211ENST00000464956 PTPN12Q05209 780 aaKnown RBP3.77□□□□□ -1.81
USP40-211ENST00000464956 ANGEL2Q5VTE6 544 aaKnown RBP3.77□□□□□ -1.81
USP40-211ENST00000464956 POTEEQ6S8J3 1075 aa3.77□□□□□ -1.81
USP40-211ENST00000464956 DNAJC10Q8IXB1 793 aa3.77□□□□□ -1.81
USP40-211ENST00000464956 DCAF11Q8TEB1 546 aa3.77□□□□□ -1.81
USP40-211ENST00000464956 SLC10A4Q96EP9 437 aa3.77□□□□□ -1.81
USP40-211ENST00000464956 COG3Q96JB2 828 aa3.77□□□□□ -1.81
USP40-211ENST00000464956 CNTNAP3BQ96NU0 1288 aa3.77□□□□□ -1.81
USP40-211ENST00000464956 PHOX2BQ99453 314 aa3.77□□□□□ -1.81
USP40-211ENST00000464956 CNTNAP3Q9BZ76 1288 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms