RNA–Protein interactions for RNA: ENST00000462212.5

ITSN1-222, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,102 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-222	ENST00000462212	ATP6V0A2	Q9Y487	856 aa		10.67	□□□□□ -0.7
ITSN1-222	ENST00000462212	TAF1	P21675	1872 aa		10.67	□□□□□ -0.7
ITSN1-222	ENST00000462212	LRRC37A	A6NMS7	1700 aa		10.67	□□□□□ -0.7
ITSN1-222	ENST00000462212	COL4A1	P02462	1669 aa		10.66	□□□□□ -0.7
ITSN1-222	ENST00000462212	KDM2B	Q8NHM5	1336 aa		10.66	□□□□□ -0.7
ITSN1-222	ENST00000462212	GLTPD2	A6NH11	291 aa		10.66	□□□□□ -0.7
ITSN1-222	ENST00000462212	PDE8A	O60658	829 aa		10.66	□□□□□ -0.7
ITSN1-222	ENST00000462212	C1QTNF8	P60827	252 aa		10.66	□□□□□ -0.7
ITSN1-222	ENST00000462212	GCKR	Q14397	625 aa		10.66	□□□□□ -0.7
ITSN1-222	ENST00000462212	TMC4	Q7Z404	712 aa		10.66	□□□□□ -0.7
ITSN1-222	ENST00000462212	SP8	Q8IXZ3	490 aa		10.66	□□□□□ -0.7
ITSN1-222	ENST00000462212	LINS1	Q8NG48	757 aa		10.66	□□□□□ -0.7
ITSN1-222	ENST00000462212	NMRK2	Q9NPI5	230 aa		10.66	□□□□□ -0.7
ITSN1-222	ENST00000462212	ZNF277	Q9NRM2	450 aa	Predicted RBP	10.66	□□□□□ -0.7
ITSN1-222	ENST00000462212		H7C1W4	665 aa		10.65	□□□□□ -0.7
ITSN1-222	ENST00000462212	IARS	P41252	1262 aa	Known RBP	10.65	□□□□□ -0.7
ITSN1-222	ENST00000462212	BEND3	Q5T5X7	828 aa		10.65	□□□□□ -0.7
ITSN1-222	ENST00000462212	CELF1	Q92879	486 aa	Known RBP	10.65	□□□□□ -0.7
ITSN1-222	ENST00000462212	RTFDC1	Q9BY42	306 aa	Predicted RBP	10.65	□□□□□ -0.7
ITSN1-222	ENST00000462212	MYH3	P11055	1940 aa		10.64	□□□□□ -0.71
ITSN1-222	ENST00000462212	WDR90	Q96KV7	1748 aa		10.64	□□□□□ -0.71
ITSN1-222	ENST00000462212	COL4A5	P29400	1685 aa		10.64	□□□□□ -0.71
ITSN1-222	ENST00000462212		F6X3S4	739 aa		10.64	□□□□□ -0.71
ITSN1-222	ENST00000462212	CT47B1	P0C2W7	299 aa	Predicted RBP	10.64	□□□□□ -0.71
ITSN1-222	ENST00000462212	CASP7	P55210	303 aa		10.64	□□□□□ -0.71
ITSN1-222	ENST00000462212	MRPL50	Q8N5N7	158 aa	Known RBP	10.64	□□□□□ -0.71
ITSN1-222	ENST00000462212	SSH1	Q8WYL5	1049 aa		10.64	□□□□□ -0.71
ITSN1-222	ENST00000462212	JARID2	Q92833	1246 aa	Predicted RBP	10.64	□□□□□ -0.71
ITSN1-222	ENST00000462212	PLA2G12B	Q9BX93	195 aa		10.64	□□□□□ -0.71
ITSN1-222	ENST00000462212	DUOX1	Q9NRD9	1551 aa		10.64	□□□□□ -0.71
ITSN1-222	ENST00000462212	RTL9	Q8NET4	1388 aa		10.64	□□□□□ -0.71
ITSN1-222	ENST00000462212	FZD9	O00144	591 aa		10.63	□□□□□ -0.71
ITSN1-222	ENST00000462212	CTSW	P56202	376 aa		10.63	□□□□□ -0.71
ITSN1-222	ENST00000462212	RPS8	P62241	208 aa	Known RBP	10.63	□□□□□ -0.71
ITSN1-222	ENST00000462212	ALDH1L2	Q3SY69	923 aa		10.63	□□□□□ -0.71
ITSN1-222	ENST00000462212	CCDC152	Q4G0S7	254 aa		10.63	□□□□□ -0.71
ITSN1-222	ENST00000462212	DPY19L2	Q6NUT2	758 aa		10.63	□□□□□ -0.71
ITSN1-222	ENST00000462212	UBE3B	Q7Z3V4	1068 aa		10.63	□□□□□ -0.71
ITSN1-222	ENST00000462212	TTLL11	Q8NHH1	800 aa		10.63	□□□□□ -0.71
ITSN1-222	ENST00000462212	TMX4	Q9H1E5	349 aa	Predicted RBP	10.63	□□□□□ -0.71
ITSN1-222	ENST00000462212	VPS33B	Q9H267	617 aa		10.63	□□□□□ -0.71
ITSN1-222	ENST00000462212	SEC31B	Q9NQW1	1179 aa		10.63	□□□□□ -0.71
ITSN1-222	ENST00000462212	LTBP1	Q14766	1721 aa		10.63	□□□□□ -0.71
ITSN1-222	ENST00000462212	PTPRC	P08575	1304 aa		10.62	□□□□□ -0.71
ITSN1-222	ENST00000462212	POTEC	B2RU33	542 aa		10.62	□□□□□ -0.71
ITSN1-222	ENST00000462212	TOMM70	O94826	608 aa		10.62	□□□□□ -0.71
ITSN1-222	ENST00000462212	BRPF1	P55201	1214 aa	Predicted RBP	10.62	□□□□□ -0.71
ITSN1-222	ENST00000462212	MPND	Q8N594	471 aa		10.62	□□□□□ -0.71
ITSN1-222	ENST00000462212	L3MBTL3	Q96JM7	780 aa	Predicted RBP	10.62	□□□□□ -0.71
ITSN1-222	ENST00000462212	RRAGC	Q9HB90	399 aa		10.62	□□□□□ -0.71
ITSN1-222	ENST00000462212	ZNF541	Q9H0D2	1346 aa		10.61	□□□□□ -0.71
ITSN1-222	ENST00000462212	ALDH1L1	O75891	902 aa		10.61	□□□□□ -0.71
ITSN1-222	ENST00000462212	CSF1R	P07333	972 aa		10.61	□□□□□ -0.71
ITSN1-222	ENST00000462212	VEGFA	P15692	232 aa	Predicted RBP	10.61	□□□□□ -0.71
ITSN1-222	ENST00000462212	DPP8	Q6V1X1	898 aa	Predicted RBP	10.61	□□□□□ -0.71
ITSN1-222	ENST00000462212	SUPT20H	Q8NEM7	779 aa		10.61	□□□□□ -0.71
ITSN1-222	ENST00000462212	JDP2	Q8WYK2	163 aa		10.61	□□□□□ -0.71
ITSN1-222	ENST00000462212	PPIP5K2	O43314	1243 aa		10.6	□□□□□ -0.71
ITSN1-222	ENST00000462212	DDN	O94850	711 aa	Predicted RBP	10.6	□□□□□ -0.71
ITSN1-222	ENST00000462212	KIAA2012	Q0VF49	1180 aa		10.6	□□□□□ -0.71
ITSN1-222	ENST00000462212	LARGE2	Q8N3Y3	721 aa		10.6	□□□□□ -0.71
ITSN1-222	ENST00000462212	RBM46	Q8TBY0	533 aa	Known RBP	10.6	□□□□□ -0.71
ITSN1-222	ENST00000462212	CCDC85A	Q96PX6	553 aa	Predicted RBP	10.6	□□□□□ -0.71
ITSN1-222	ENST00000462212	SRCIN1	Q9C0H9	1055 aa		10.6	□□□□□ -0.71
ITSN1-222	ENST00000462212	GREM2	Q9H772	168 aa		10.6	□□□□□ -0.71
ITSN1-222	ENST00000462212	PODXL2	Q9NZ53	605 aa		10.6	□□□□□ -0.71
ITSN1-222	ENST00000462212	SCN4A	P35499	1836 aa		10.59	□□□□□ -0.71
ITSN1-222	ENST00000462212	GRM8	O00222	908 aa		10.59	□□□□□ -0.71
ITSN1-222	ENST00000462212	GPSM2	P81274	684 aa		10.59	□□□□□ -0.71
ITSN1-222	ENST00000462212	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.59	□□□□□ -0.71
ITSN1-222	ENST00000462212	AOC3	Q16853	763 aa		10.59	□□□□□ -0.71
ITSN1-222	ENST00000462212	ANKRD18A	Q8IVF6	992 aa		10.59	□□□□□ -0.71
ITSN1-222	ENST00000462212	NIM1K	Q8IY84	436 aa		10.59	□□□□□ -0.71
ITSN1-222	ENST00000462212	GPC2	Q8N158	579 aa		10.59	□□□□□ -0.71
ITSN1-222	ENST00000462212	CDC5L	Q99459	802 aa	Known RBP	10.59	□□□□□ -0.71
ITSN1-222	ENST00000462212	BCL2L13	Q9BXK5	485 aa		10.59	□□□□□ -0.71
ITSN1-222	ENST00000462212	POLL	Q9UGP5	575 aa		10.59	□□□□□ -0.71
ITSN1-222	ENST00000462212	NSFL1C	Q9UNZ2	370 aa	Known RBP	10.59	□□□□□ -0.71
ITSN1-222	ENST00000462212	UTY	O14607	1347 aa		10.58	□□□□□ -0.71
ITSN1-222	ENST00000462212	RARS	P54136	660 aa	Known RBP	10.58	□□□□□ -0.72
ITSN1-222	ENST00000462212	EIF6	P56537	245 aa	Known RBP	10.58	□□□□□ -0.72
ITSN1-222	ENST00000462212	FOXO4	P98177	505 aa		10.58	□□□□□ -0.72
ITSN1-222	ENST00000462212	FAM161A	Q3B820	660 aa		10.58	□□□□□ -0.72
ITSN1-222	ENST00000462212	SLC4A10	Q6U841	1118 aa		10.58	□□□□□ -0.72
ITSN1-222	ENST00000462212	TBC1D16	Q8TBP0	767 aa		10.58	□□□□□ -0.72
ITSN1-222	ENST00000462212	SMC4	Q9NTJ3	1288 aa		10.58	□□□□□ -0.72
ITSN1-222	ENST00000462212	BSDC1	Q9NW68	430 aa	Predicted RBP	10.58	□□□□□ -0.72
ITSN1-222	ENST00000462212	ZNRF3	Q9ULT6	936 aa		10.58	□□□□□ -0.72
ITSN1-222	ENST00000462212	ZBED9	Q6R2W3	1325 aa		10.58	□□□□□ -0.72
ITSN1-222	ENST00000462212	IQCA1L	A6NCM1	817 aa		10.57	□□□□□ -0.72
ITSN1-222	ENST00000462212	ITGA6	P23229	1130 aa		10.57	□□□□□ -0.72
ITSN1-222	ENST00000462212	FSTL1	Q12841	308 aa		10.57	□□□□□ -0.72
ITSN1-222	ENST00000462212	EPHA10	Q5JZY3	1008 aa		10.57	□□□□□ -0.72
ITSN1-222	ENST00000462212	C16orf71	Q8IYS4	520 aa	Predicted RBP	10.57	□□□□□ -0.72
ITSN1-222	ENST00000462212	C9orf78	Q9NZ63	289 aa	Predicted RBP	10.57	□□□□□ -0.72
ITSN1-222	ENST00000462212	XDH	P47989	1333 aa		10.57	□□□□□ -0.72
ITSN1-222	ENST00000462212	YDJC	A8MPS7	323 aa		10.56	□□□□□ -0.72
ITSN1-222	ENST00000462212	NBPF7	P0C2Y1	421 aa	Predicted RBP	10.56	□□□□□ -0.72
ITSN1-222	ENST00000462212	HSPA6	P17066	643 aa		10.56	□□□□□ -0.72
ITSN1-222	ENST00000462212	CXCL9	Q07325	125 aa		10.56	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms