RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 CCDC152Q4G0S7 254 aa28.88■■■□□ 2.21
CCDC28B-203ENST00000461819 ARHGAP45Q92619 1136 aa28.88■■■□□ 2.21
CCDC28B-203ENST00000461819 SBF1O95248 1867 aa28.88■■■□□ 2.21
CCDC28B-203ENST00000461819 CASP7P55210 303 aa28.87■■■□□ 2.21
CCDC28B-203ENST00000461819 SPEF2Q9C093 1822 aa28.86■■■□□ 2.21
CCDC28B-203ENST00000461819 CCT4P50991 539 aaKnown RBP28.86■■■□□ 2.21
CCDC28B-203ENST00000461819 GRAPQ13588 217 aa28.86■■■□□ 2.21
CCDC28B-203ENST00000461819 CCDC93Q567U6 631 aa28.86■■■□□ 2.21
CCDC28B-203ENST00000461819 GRAPLQ8TC17 118 aaPredicted RBP28.86■■■□□ 2.21
CCDC28B-203ENST00000461819 CCDC85AQ96PX6 553 aaPredicted RBP28.86■■■□□ 2.21
CCDC28B-203ENST00000461819 C7orf43Q8WVR3 580 aa28.85■■■□□ 2.21
CCDC28B-203ENST00000461819 RASSF7Q02833 373 aa28.84■■■□□ 2.21
CCDC28B-203ENST00000461819 PLA2G12BQ9BX93 195 aa28.84■■■□□ 2.21
CCDC28B-203ENST00000461819 TMX4Q9H1E5 349 aaPredicted RBP28.84■■■□□ 2.21
CCDC28B-203ENST00000461819 BBOX1O75936 387 aa28.83■■■□□ 2.21
CCDC28B-203ENST00000461819 ZKSCAN2Q63HK3 967 aa28.83■■■□□ 2.21
CCDC28B-203ENST00000461819 OLFM4Q6UX06 510 aa28.83■■■□□ 2.21
CCDC28B-203ENST00000461819 ATF7IPQ6VMQ6 1270 aa28.83■■■□□ 2.21
CCDC28B-203ENST00000461819 NFKBIEO00221 500 aa28.82■■■□□ 2.2
CCDC28B-203ENST00000461819 TRIM27P14373 513 aa28.82■■■□□ 2.2
CCDC28B-203ENST00000461819 YY1P25490 414 aa28.82■■■□□ 2.2
CCDC28B-203ENST00000461819 TTLL11Q8NHH1 800 aa28.82■■■□□ 2.2
CCDC28B-203ENST00000461819 COL4A1P02462 1669 aa28.82■■■□□ 2.2
CCDC28B-203ENST00000461819 LRRC37AA6NMS7 1700 aa28.82■■■□□ 2.2
CCDC28B-203ENST00000461819 CC2D2BQ6DHV5 1058 aa28.81■■■□□ 2.2
CCDC28B-203ENST00000461819 CELF1Q92879 486 aaKnown RBP28.81■■■□□ 2.2
CCDC28B-203ENST00000461819 TAOK3Q9H2K8 898 aa28.81■■■□□ 2.2
CCDC28B-203ENST00000461819 SEC31BQ9NQW1 1179 aa28.81■■■□□ 2.2
CCDC28B-203ENST00000461819 RTKN2Q8IZC4 609 aa28.8■■■□□ 2.2
CCDC28B-203ENST00000461819 RCAN3Q9UKA8 241 aa28.8■■■□□ 2.2
CCDC28B-203ENST00000461819 ATP6V0A2Q9Y487 856 aa28.8■■■□□ 2.2
CCDC28B-203ENST00000461819 UTYO14607 1347 aa28.79■■■□□ 2.2
CCDC28B-203ENST00000461819 NBPF7P0C2Y1 421 aaPredicted RBP28.79■■■□□ 2.2
CCDC28B-203ENST00000461819 TMC4Q7Z404 712 aa28.79■■■□□ 2.2
CCDC28B-203ENST00000461819 CLUAP1Q96AJ1 413 aa28.79■■■□□ 2.2
CCDC28B-203ENST00000461819 GREM2Q9H772 168 aa28.79■■■□□ 2.2
CCDC28B-203ENST00000461819 DICER1Q9UPY3 1922 aaKnown RBP28.79■■■□□ 2.2
CCDC28B-203ENST00000461819 RTL9Q8NET4 1388 aa28.78■■■□□ 2.2
CCDC28B-203ENST00000461819 TIAM2Q8IVF5 1701 aa28.78■■■□□ 2.2
CCDC28B-203ENST00000461819 TNNQ9UQP3 1299 aa28.78■■■□□ 2.2
CCDC28B-203ENST00000461819 LTBP3Q9NS15 1303 aa28.77■■■□□ 2.2
CCDC28B-203ENST00000461819 RPS8P62241 208 aaKnown RBP28.77■■■□□ 2.2
CCDC28B-203ENST00000461819 GRIPAP1Q4V328 841 aa28.77■■■□□ 2.2
CCDC28B-203ENST00000461819 SLC51AQ86UW1 340 aa28.77■■■□□ 2.2
CCDC28B-203ENST00000461819 CDC5LQ99459 802 aaKnown RBP28.77■■■□□ 2.2
CCDC28B-203ENST00000461819 RNF181Q9P0P0 153 aa28.77■■■□□ 2.2
CCDC28B-203ENST00000461819 CHMP3Q9Y3E7 222 aa28.77■■■□□ 2.2
CCDC28B-203ENST00000461819 LMNB1P20700 586 aa28.76■■■□□ 2.19
CCDC28B-203ENST00000461819 FOXO4P98177 505 aa28.76■■■□□ 2.19
CCDC28B-203ENST00000461819 FKBP4Q02790 459 aaKnown RBP eCLIP28.76■■■□□ 2.19
CCDC28B-203ENST00000461819 FAM161AQ3B820 660 aa28.76■■■□□ 2.19
CCDC28B-203ENST00000461819 C9orf131Q5VYM1 1079 aa28.76■■■□□ 2.19
CCDC28B-203ENST00000461819 INTS3Q68E01 1043 aaKnown RBP28.76■■■□□ 2.19
CCDC28B-203ENST00000461819 ANKRD18AQ8IVF6 992 aa28.76■■■□□ 2.19
CCDC28B-203ENST00000461819 SP8Q8IXZ3 490 aa28.76■■■□□ 2.19
CCDC28B-203ENST00000461819 FTSJ3Q8IY81 847 aaKnown RBP28.76■■■□□ 2.19
CCDC28B-203ENST00000461819 SUCLG2Q96I99 432 aa28.76■■■□□ 2.19
CCDC28B-203ENST00000461819 USP44Q9H0E7 712 aa28.76■■■□□ 2.19
CCDC28B-203ENST00000461819 CSF1RP07333 972 aa28.75■■■□□ 2.19
CCDC28B-203ENST00000461819 SNED1Q8TER0 1413 aa28.75■■■□□ 2.19
CCDC28B-203ENST00000461819 ITGA6P23229 1130 aa28.74■■■□□ 2.19
CCDC28B-203ENST00000461819 EPHA10Q5JZY3 1008 aa28.74■■■□□ 2.19
CCDC28B-203ENST00000461819 LMBR1LQ6UX01 489 aa28.74■■■□□ 2.19
CCDC28B-203ENST00000461819 UBTFL1P0CB47 393 aaPredicted RBP28.73■■■□□ 2.19
CCDC28B-203ENST00000461819 ANKRD18BA2A2Z9 1011 aa28.71■■■□□ 2.19
CCDC28B-203ENST00000461819 PRELPP51888 382 aa28.71■■■□□ 2.19
CCDC28B-203ENST00000461819 IFIT5Q13325 482 aaKnown RBP28.71■■■□□ 2.19
CCDC28B-203ENST00000461819 DPP8Q6V1X1 898 aaPredicted RBP28.71■■■□□ 2.19
CCDC28B-203ENST00000461819 DZIP1LQ8IYY4 767 aaKnown RBP28.71■■■□□ 2.19
CCDC28B-203ENST00000461819 PSMD1Q99460 953 aa28.71■■■□□ 2.19
CCDC28B-203ENST00000461819 BICC1Q9H694 974 aaKnown RBP28.71■■■□□ 2.19
CCDC28B-203ENST00000461819 IGHMBP2P38935 993 aaKnown RBP28.7■■■□□ 2.18
CCDC28B-203ENST00000461819 MPNDQ8N594 471 aa28.7■■■□□ 2.18
CCDC28B-203ENST00000461819 TMEM57Q8N5G2 664 aa28.7■■■□□ 2.18
CCDC28B-203ENST00000461819 KAZALD1Q96I82 304 aa28.7■■■□□ 2.18
CCDC28B-203ENST00000461819 ZNF277Q9NRM2 450 aaPredicted RBP28.7■■■□□ 2.18
CCDC28B-203ENST00000461819 CCDC57Q2TAC2 916 aa28.69■■■□□ 2.18
CCDC28B-203ENST00000461819 LTBP1Q14766 1721 aa28.69■■■□□ 2.18
CCDC28B-203ENST00000461819 MEIS3Q99687 375 aa28.68■■■□□ 2.18
CCDC28B-203ENST00000461819 HDAC5Q9UQL6 1122 aa28.68■■■□□ 2.18
CCDC28B-203ENST00000461819 TAF7LQ5H9L4 462 aa28.67■■■□□ 2.18
CCDC28B-203ENST00000461819 SUPT20HQ8NEM7 779 aa28.67■■■□□ 2.18
CCDC28B-203ENST00000461819 MPHOSPH8Q99549 860 aa28.67■■■□□ 2.18
CCDC28B-203ENST00000461819 NSFL1CQ9UNZ2 370 aaKnown RBP28.67■■■□□ 2.18
CCDC28B-203ENST00000461819 DUOX1Q9NRD9 1551 aa28.67■■■□□ 2.18
CCDC28B-203ENST00000461819 GNAI3P08754 354 aa28.66■■■□□ 2.18
CCDC28B-203ENST00000461819 MS4A1P11836 297 aa28.66■■■□□ 2.18
CCDC28B-203ENST00000461819 IARSP41252 1262 aaKnown RBP28.66■■■□□ 2.18
CCDC28B-203ENST00000461819 ITPRIPQ8IWB1 547 aa28.66■■■□□ 2.18
CCDC28B-203ENST00000461819 BSDC1Q9NW68 430 aaPredicted RBP28.66■■■□□ 2.18
CCDC28B-203ENST00000461819 RLBP1P12271 317 aa28.65■■■□□ 2.18
CCDC28B-203ENST00000461819 GPSM2P81274 684 aa28.65■■■□□ 2.18
CCDC28B-203ENST00000461819 RABL6Q3YEC7 729 aaPredicted RBP28.65■■■□□ 2.18
CCDC28B-203ENST00000461819 ANKRD44Q8N8A2 993 aa28.65■■■□□ 2.18
CCDC28B-203ENST00000461819 ANKIB1Q9P2G1 1089 aa28.65■■■□□ 2.18
CCDC28B-203ENST00000461819 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.64■■■□□ 2.18
CCDC28B-203ENST00000461819 A0A1B0GUL6 1792 aa28.64■■■□□ 2.18
CCDC28B-203ENST00000461819 ZC3H4Q9UPT8 1303 aaKnown RBP28.64■■■□□ 2.17
CCDC28B-203ENST00000461819 PLIN1O60240 522 aa28.63■■■□□ 2.17
CCDC28B-203ENST00000461819 RTFDC1Q9BY42 306 aaPredicted RBP28.63■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms