RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 GRAPLQ8TC17 118 aaPredicted RBP15.05■□□□□ -0
VPS52-213ENST00000461743 PLA2G12BQ9BX93 195 aa15.05■□□□□ -0
VPS52-213ENST00000461743 TAOK3Q9H2K8 898 aa15.05■□□□□ -0
VPS52-213ENST00000461743 F6X3S4 739 aa15.04■□□□□ -0
VPS52-213ENST00000461743 H7C1W4 665 aa15.04■□□□□ -0
VPS52-213ENST00000461743 NFKBIEO00221 500 aa15.04■□□□□ -0
VPS52-213ENST00000461743 LMNB1P20700 586 aa15.04■□□□□ -0
VPS52-213ENST00000461743 RARSP54136 660 aaKnown RBP15.04■□□□□ -0
VPS52-213ENST00000461743 CCDC152Q4G0S7 254 aa15.04■□□□□ -0
VPS52-213ENST00000461743 SRCIN1Q9C0H9 1055 aa15.04■□□□□ -0
VPS52-213ENST00000461743 PSME4Q14997 1843 aa15.03■□□□□ -0
VPS52-213ENST00000461743 COL4A1P02462 1669 aa15.03■□□□□ -0
VPS52-213ENST00000461743 DUOX1Q9NRD9 1551 aa15.03■□□□□ -0
VPS52-213ENST00000461743 BBOX1O75936 387 aa15.03■□□□□ -0
VPS52-213ENST00000461743 PSMD1Q99460 953 aa15.03■□□□□ -0
VPS52-213ENST00000461743 TMX4Q9H1E5 349 aaPredicted RBP15.03■□□□□ -0
VPS52-213ENST00000461743 CASP7P55210 303 aa15.02■□□□□ -0
VPS52-213ENST00000461743 CTSWP56202 376 aa15.02■□□□□ -0
VPS52-213ENST00000461743 FKBP4Q02790 459 aaKnown RBP eCLIP15.02■□□□□ -0
VPS52-213ENST00000461743 RASSF7Q02833 373 aa15.02■□□□□ -0
VPS52-213ENST00000461743 RTL5Q5HYW3 569 aaPredicted RBP15.02■□□□□ -0
VPS52-213ENST00000461743 UBE3BQ7Z3V4 1068 aa15.02■□□□□ -0
VPS52-213ENST00000461743 ARHGAP45Q92619 1136 aa15.02■□□□□ -0
VPS52-213ENST00000461743 BCL2L13Q9BXK5 485 aa15.02■□□□□ -0
VPS52-213ENST00000461743 API5Q9BZZ5 524 aaKnown RBP15.02■□□□□ -0
VPS52-213ENST00000461743 ATP6V0A2Q9Y487 856 aa15.02■□□□□ -0
VPS52-213ENST00000461743 SCN4AP35499 1836 aa15.01□□□□□ -0.01
VPS52-213ENST00000461743 WDR90Q96KV7 1748 aa15.01□□□□□ -0.01
VPS52-213ENST00000461743 GRM8O00222 908 aa15.01□□□□□ -0.01
VPS52-213ENST00000461743 C9orf131Q5VYM1 1079 aa15.01□□□□□ -0.01
VPS52-213ENST00000461743 RNF181Q9P0P0 153 aa15.01□□□□□ -0.01
VPS52-213ENST00000461743 UTYO14607 1347 aa15□□□□□ -0.01
VPS52-213ENST00000461743 SLC4A10Q6U841 1118 aa15□□□□□ -0.01
VPS52-213ENST00000461743 SP8Q8IXZ3 490 aa15□□□□□ -0.01
VPS52-213ENST00000461743 ZNF219Q9P2Y4 722 aaPredicted RBP15□□□□□ -0.01
VPS52-213ENST00000461743 IPO8O15397 1037 aaKnown RBP14.99□□□□□ -0.01
VPS52-213ENST00000461743 CCT4P50991 539 aaKnown RBP14.99□□□□□ -0.01
VPS52-213ENST00000461743 ZNF784Q8NCA9 323 aaPredicted RBP14.99□□□□□ -0.01
VPS52-213ENST00000461743 CDC5LQ99459 802 aaKnown RBP14.99□□□□□ -0.01
VPS52-213ENST00000461743 VPS33BQ9H267 617 aa14.99□□□□□ -0.01
VPS52-213ENST00000461743 C9orf78Q9NZ63 289 aaPredicted RBP14.99□□□□□ -0.01
VPS52-213ENST00000461743 SUPT20HQ8NEM7 779 aa14.98□□□□□ -0.01
VPS52-213ENST00000461743 TTLL11Q8NHH1 800 aa14.98□□□□□ -0.01
VPS52-213ENST00000461743 NOB1Q9ULX3 412 aaKnown RBP14.98□□□□□ -0.01
VPS52-213ENST00000461743 CSF1RP07333 972 aa14.97□□□□□ -0.01
VPS52-213ENST00000461743 RPS8P62241 208 aaKnown RBP14.97□□□□□ -0.01
VPS52-213ENST00000461743 CELF1Q92879 486 aaKnown RBP14.97□□□□□ -0.01
VPS52-213ENST00000461743 RTFDC1Q9BY42 306 aaPredicted RBP14.97□□□□□ -0.01
VPS52-213ENST00000461743 IARSP41252 1262 aaKnown RBP14.96□□□□□ -0.01
VPS52-213ENST00000461743 PRELPP51888 382 aa14.96□□□□□ -0.01
VPS52-213ENST00000461743 ANKRD18AQ8IVF6 992 aa14.96□□□□□ -0.01
VPS52-213ENST00000461743 JARID2Q92833 1246 aaPredicted RBP14.96□□□□□ -0.01
VPS52-213ENST00000461743 OLFM4Q6UX06 510 aa14.95□□□□□ -0.02
VPS52-213ENST00000461743 DPP8Q6V1X1 898 aaPredicted RBP14.95□□□□□ -0.02
VPS52-213ENST00000461743 ATF7IPQ6VMQ6 1270 aa14.95□□□□□ -0.02
VPS52-213ENST00000461743 GREM2Q9H772 168 aa14.95□□□□□ -0.02
VPS52-213ENST00000461743 COL4A5P29400 1685 aa14.95□□□□□ -0.02
VPS52-213ENST00000461743 KDM2BQ8NHM5 1336 aa14.94□□□□□ -0.02
VPS52-213ENST00000461743 FAM161AQ3B820 660 aa14.94□□□□□ -0.02
VPS52-213ENST00000461743 ZKSCAN2Q63HK3 967 aa14.94□□□□□ -0.02
VPS52-213ENST00000461743 MPNDQ8N594 471 aa14.94□□□□□ -0.02
VPS52-213ENST00000461743 SEC31BQ9NQW1 1179 aa14.94□□□□□ -0.02
VPS52-213ENST00000461743 PODXL2Q9NZ53 605 aa14.94□□□□□ -0.02
VPS52-213ENST00000461743 HDAC5Q9UQL6 1122 aa14.94□□□□□ -0.02
VPS52-213ENST00000461743 ZNF646O15015 1829 aaPredicted RBP14.94□□□□□ -0.02
VPS52-213ENST00000461743 TRIM27P14373 513 aa14.93□□□□□ -0.02
VPS52-213ENST00000461743 ITGA6P23229 1130 aa14.93□□□□□ -0.02
VPS52-213ENST00000461743 IGHMBP2P38935 993 aaKnown RBP14.93□□□□□ -0.02
VPS52-213ENST00000461743 FOXO4P98177 505 aa14.93□□□□□ -0.02
VPS52-213ENST00000461743 INTS3Q68E01 1043 aaKnown RBP14.93□□□□□ -0.02
VPS52-213ENST00000461743 GPBP1L1Q9HC44 474 aaPredicted RBP14.93□□□□□ -0.02
VPS52-213ENST00000461743 ZNF277Q9NRM2 450 aaPredicted RBP14.93□□□□□ -0.02
VPS52-213ENST00000461743 BSDC1Q9NW68 430 aaPredicted RBP14.93□□□□□ -0.02
VPS52-213ENST00000461743 MYH13Q9UKX3 1938 aa14.93□□□□□ -0.02
VPS52-213ENST00000461743 XDHP47989 1333 aa14.92□□□□□ -0.02
VPS52-213ENST00000461743 ANKRD18BA2A2Z9 1011 aa14.92□□□□□ -0.02
VPS52-213ENST00000461743 BCAR3O75815 825 aa14.92□□□□□ -0.02
VPS52-213ENST00000461743 NBPF7P0C2Y1 421 aaPredicted RBP14.92□□□□□ -0.02
VPS52-213ENST00000461743 IFIT5Q13325 482 aaKnown RBP14.92□□□□□ -0.02
VPS52-213ENST00000461743 RABL6Q3YEC7 729 aaPredicted RBP14.92□□□□□ -0.02
VPS52-213ENST00000461743 JDP2Q8WYK2 163 aa14.92□□□□□ -0.02
VPS52-213ENST00000461743 SCN9AQ15858 1988 aa14.92□□□□□ -0.02
VPS52-213ENST00000461743 GLTPD2A6NH11 291 aa14.91□□□□□ -0.02
VPS52-213ENST00000461743 KIAA2012Q0VF49 1180 aa14.91□□□□□ -0.02
VPS52-213ENST00000461743 SUCLG2Q96I99 432 aa14.91□□□□□ -0.02
VPS52-213ENST00000461743 CCDC85AQ96PX6 553 aaPredicted RBP14.91□□□□□ -0.02
VPS52-213ENST00000461743 EYA3Q99504 573 aa14.91□□□□□ -0.02
VPS52-213ENST00000461743 USP44Q9H0E7 712 aa14.91□□□□□ -0.02
VPS52-213ENST00000461743 ARAP2Q8WZ64 1704 aa14.91□□□□□ -0.02
VPS52-213ENST00000461743 FZD9O00144 591 aa14.9□□□□□ -0.02
VPS52-213ENST00000461743 PPIP5K2O43314 1243 aa14.9□□□□□ -0.02
VPS52-213ENST00000461743 CCDC57Q2TAC2 916 aa14.9□□□□□ -0.02
VPS52-213ENST00000461743 DPY19L2Q6NUT2 758 aa14.9□□□□□ -0.02
VPS52-213ENST00000461743 LMBR1LQ6UX01 489 aa14.9□□□□□ -0.02
VPS52-213ENST00000461743 LARGE2Q8N3Y3 721 aa14.9□□□□□ -0.02
VPS52-213ENST00000461743 FRAT1Q92837 279 aaPredicted RBP14.9□□□□□ -0.02
VPS52-213ENST00000461743 MPHOSPH8Q99549 860 aa14.9□□□□□ -0.02
VPS52-213ENST00000461743 GNAI3P08754 354 aa14.89□□□□□ -0.03
VPS52-213ENST00000461743 UBTFL1P0CB47 393 aaPredicted RBP14.89□□□□□ -0.03
VPS52-213ENST00000461743 MS4A1P11836 297 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms