RNA–Protein interactions for RNA: ENST00000461154.1

SHANK1-205, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 4

Gene SHANK1, Length 558 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-205ENST00000461154 UTRNP46939 3433 aa20.54■□□□□ 0.88
SHANK1-205ENST00000461154 SF3B3Q15393 1217 aaKnown RBP20.54■□□□□ 0.88
SHANK1-205ENST00000461154 GRIPAP1Q4V328 841 aa20.54■□□□□ 0.88
SHANK1-205ENST00000461154 DDX46Q7L014 1031 aaKnown RBP20.54■□□□□ 0.88
SHANK1-205ENST00000461154 FRAT1Q92837 279 aaPredicted RBP20.54■□□□□ 0.88
SHANK1-205ENST00000461154 GOLGB1Q14789 3259 aaKnown RBP20.54■□□□□ 0.88
SHANK1-205ENST00000461154 ZC3H4Q9UPT8 1303 aaKnown RBP20.53■□□□□ 0.88
SHANK1-205ENST00000461154 GRM8O00222 908 aa20.53■□□□□ 0.88
SHANK1-205ENST00000461154 CCT4P50991 539 aaKnown RBP20.53■□□□□ 0.88
SHANK1-205ENST00000461154 ZNF526Q8TF50 670 aaPredicted RBP20.53■□□□□ 0.88
SHANK1-205ENST00000461154 JARID2Q92833 1246 aaPredicted RBP20.53■□□□□ 0.88
SHANK1-205ENST00000461154 TMX4Q9H1E5 349 aaPredicted RBP20.53■□□□□ 0.88
SHANK1-205ENST00000461154 C9orf78Q9NZ63 289 aaPredicted RBP20.53■□□□□ 0.88
SHANK1-205ENST00000461154 PPEF1O14829 653 aaPredicted RBP20.52■□□□□ 0.88
SHANK1-205ENST00000461154 BBOX1O75936 387 aa20.52■□□□□ 0.88
SHANK1-205ENST00000461154 PRELPP51888 382 aa20.52■□□□□ 0.88
SHANK1-205ENST00000461154 CCDC152Q4G0S7 254 aa20.52■□□□□ 0.88
SHANK1-205ENST00000461154 MYH3P11055 1940 aa20.51■□□□□ 0.87
SHANK1-205ENST00000461154 CASP7P55210 303 aa20.51■□□□□ 0.87
SHANK1-205ENST00000461154 FKBP4Q02790 459 aaKnown RBP eCLIP20.51■□□□□ 0.87
SHANK1-205ENST00000461154 ZKSCAN2Q63HK3 967 aa20.51■□□□□ 0.87
SHANK1-205ENST00000461154 ATF7IPQ6VMQ6 1270 aa20.51■□□□□ 0.87
SHANK1-205ENST00000461154 ABCC4O15439 1325 aa20.51■□□□□ 0.87
SHANK1-205ENST00000461154 CTSWP56202 376 aa20.5■□□□□ 0.87
SHANK1-205ENST00000461154 OLFM4Q6UX06 510 aa20.5■□□□□ 0.87
SHANK1-205ENST00000461154 PLA2G12BQ9BX93 195 aa20.5■□□□□ 0.87
SHANK1-205ENST00000461154 SBF1O95248 1867 aa20.5■□□□□ 0.87
SHANK1-205ENST00000461154 TRIM27P14373 513 aa20.49■□□□□ 0.87
SHANK1-205ENST00000461154 GRAPQ13588 217 aa20.49■□□□□ 0.87
SHANK1-205ENST00000461154 GRAPLQ8TC17 118 aaPredicted RBP20.49■□□□□ 0.87
SHANK1-205ENST00000461154 RCAN3Q9UKA8 241 aa20.49■□□□□ 0.87
SHANK1-205ENST00000461154 FER1L6Q2WGJ9 1857 aa20.49■□□□□ 0.87
SHANK1-205ENST00000461154 KDM2BQ8NHM5 1336 aa20.49■□□□□ 0.87
SHANK1-205ENST00000461154 TMC4Q7Z404 712 aa20.48■□□□□ 0.87
SHANK1-205ENST00000461154 PSMD1Q99460 953 aa20.48■□□□□ 0.87
SHANK1-205ENST00000461154 ATP6V0A2Q9Y487 856 aa20.48■□□□□ 0.87
SHANK1-205ENST00000461154 SP8Q8IXZ3 490 aa20.47■□□□□ 0.87
SHANK1-205ENST00000461154 UTYO14607 1347 aa20.47■□□□□ 0.87
SHANK1-205ENST00000461154 INTS3Q68E01 1043 aaKnown RBP20.46■□□□□ 0.87
SHANK1-205ENST00000461154 DPY19L2Q6NUT2 758 aa20.46■□□□□ 0.87
SHANK1-205ENST00000461154 TTLL11Q8NHH1 800 aa20.46■□□□□ 0.87
SHANK1-205ENST00000461154 RTL9Q8NET4 1388 aa20.46■□□□□ 0.87
SHANK1-205ENST00000461154 GLTPD2A6NH11 291 aa20.45■□□□□ 0.86
SHANK1-205ENST00000461154 FTSJ3Q8IY81 847 aaKnown RBP20.45■□□□□ 0.86
SHANK1-205ENST00000461154 ZNF277Q9NRM2 450 aaPredicted RBP20.45■□□□□ 0.86
SHANK1-205ENST00000461154 NBPF7P0C2Y1 421 aaPredicted RBP20.44■□□□□ 0.86
SHANK1-205ENST00000461154 MS4A1P11836 297 aa20.44■□□□□ 0.86
SHANK1-205ENST00000461154 IARSP41252 1262 aaKnown RBP20.44■□□□□ 0.86
SHANK1-205ENST00000461154 CLUAP1Q96AJ1 413 aa20.44■□□□□ 0.86
SHANK1-205ENST00000461154 CCDC85AQ96PX6 553 aaPredicted RBP20.44■□□□□ 0.86
SHANK1-205ENST00000461154 CDC5LQ99459 802 aaKnown RBP20.44■□□□□ 0.86
SHANK1-205ENST00000461154 USP44Q9H0E7 712 aa20.44■□□□□ 0.86
SHANK1-205ENST00000461154 HDAC5Q9UQL6 1122 aa20.44■□□□□ 0.86
SHANK1-205ENST00000461154 SNED1Q8TER0 1413 aa20.44■□□□□ 0.86
SHANK1-205ENST00000461154 CSF1RP07333 972 aa20.43■□□□□ 0.86
SHANK1-205ENST00000461154 RPS8P62241 208 aaKnown RBP20.43■□□□□ 0.86
SHANK1-205ENST00000461154 SUPT20HQ8NEM7 779 aa20.43■□□□□ 0.86
SHANK1-205ENST00000461154 CELF1Q92879 486 aaKnown RBP20.43■□□□□ 0.86
SHANK1-205ENST00000461154 GREM2Q9H772 168 aa20.43■□□□□ 0.86
SHANK1-205ENST00000461154 TAF1P21675 1872 aa20.43■□□□□ 0.86
SHANK1-205ENST00000461154 KIF3CO14782 793 aa20.42■□□□□ 0.86
SHANK1-205ENST00000461154 C1QTNF8P60827 252 aa20.42■□□□□ 0.86
SHANK1-205ENST00000461154 FOXO4P98177 505 aa20.42■□□□□ 0.86
SHANK1-205ENST00000461154 ANKRD18AQ8IVF6 992 aa20.42■□□□□ 0.86
SHANK1-205ENST00000461154 DZIP1LQ8IYY4 767 aaKnown RBP20.42■□□□□ 0.86
SHANK1-205ENST00000461154 MPNDQ8N594 471 aa20.42■□□□□ 0.86
SHANK1-205ENST00000461154 VPS33BQ9H267 617 aa20.42■□□□□ 0.86
SHANK1-205ENST00000461154 NMRK2Q9NPI5 230 aa20.42■□□□□ 0.86
SHANK1-205ENST00000461154 SEC31BQ9NQW1 1179 aa20.42■□□□□ 0.86
SHANK1-205ENST00000461154 CCDC88AQ3V6T2 1871 aa20.41■□□□□ 0.86
SHANK1-205ENST00000461154 UBTFL1P0CB47 393 aaPredicted RBP20.41■□□□□ 0.86
SHANK1-205ENST00000461154 DPP8Q6V1X1 898 aaPredicted RBP20.41■□□□□ 0.86
SHANK1-205ENST00000461154 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.41■□□□□ 0.86
SHANK1-205ENST00000461154 JDP2Q8WYK2 163 aa20.41■□□□□ 0.86
SHANK1-205ENST00000461154 SUCLG2Q96I99 432 aa20.41■□□□□ 0.86
SHANK1-205ENST00000461154 ITGA6P23229 1130 aa20.4■□□□□ 0.86
SHANK1-205ENST00000461154 FAM161AQ3B820 660 aa20.4■□□□□ 0.86
SHANK1-205ENST00000461154 LMBR1LQ6UX01 489 aa20.4■□□□□ 0.86
SHANK1-205ENST00000461154 RTFDC1Q9BY42 306 aaPredicted RBP20.4■□□□□ 0.86
SHANK1-205ENST00000461154 RRAGCQ9HB90 399 aa20.4■□□□□ 0.86
SHANK1-205ENST00000461154 TNNQ9UQP3 1299 aa20.4■□□□□ 0.86
SHANK1-205ENST00000461154 CHMP3Q9Y3E7 222 aa20.4■□□□□ 0.86
SHANK1-205ENST00000461154 LRRC37AA6NMS7 1700 aa20.39■□□□□ 0.86
SHANK1-205ENST00000461154 ANKRD18BA2A2Z9 1011 aa20.39■□□□□ 0.85
SHANK1-205ENST00000461154 GNAI3P08754 354 aa20.39■□□□□ 0.85
SHANK1-205ENST00000461154 IFIT5Q13325 482 aaKnown RBP20.39■□□□□ 0.85
SHANK1-205ENST00000461154 LARGE2Q8N3Y3 721 aa20.39■□□□□ 0.85
SHANK1-205ENST00000461154 TMEM57Q8N5G2 664 aa20.39■□□□□ 0.85
SHANK1-205ENST00000461154 DICER1Q9UPY3 1922 aaKnown RBP20.38■□□□□ 0.85
SHANK1-205ENST00000461154 IGHMBP2P38935 993 aaKnown RBP20.38■□□□□ 0.85
SHANK1-205ENST00000461154 CCDC57Q2TAC2 916 aa20.38■□□□□ 0.85
SHANK1-205ENST00000461154 EPHA10Q5JZY3 1008 aa20.38■□□□□ 0.85
SHANK1-205ENST00000461154 SLC51AQ86UW1 340 aa20.38■□□□□ 0.85
SHANK1-205ENST00000461154 C16orf71Q8IYS4 520 aaPredicted RBP20.38■□□□□ 0.85
SHANK1-205ENST00000461154 BICC1Q9H694 974 aaKnown RBP20.38■□□□□ 0.85
SHANK1-205ENST00000461154 FZD9O00144 591 aa20.37■□□□□ 0.85
SHANK1-205ENST00000461154 VEGFAP15692 232 aaPredicted RBP20.37■□□□□ 0.85
SHANK1-205ENST00000461154 RABL6Q3YEC7 729 aaPredicted RBP20.37■□□□□ 0.85
SHANK1-205ENST00000461154 KAZALD1Q96I82 304 aa20.37■□□□□ 0.85
SHANK1-205ENST00000461154 MEIS3Q99687 375 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms