RNA–Protein interactions for RNA: ENST00000459927.5

GPNMB-204, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-204ENST00000459927 CCDC146Q8IYE0 955 aa16.13■□□□□ 0.17
GPNMB-204ENST00000459927 GPR101Q96P66 508 aaPredicted RBP16.13■□□□□ 0.17
GPNMB-204ENST00000459927 LAS1LQ9Y4W2 734 aaKnown RBP16.13■□□□□ 0.17
GPNMB-204ENST00000459927 SH3TC1Q8TE82 1336 aa16.13■□□□□ 0.17
GPNMB-204ENST00000459927 HSPA8P11142 646 aaKnown RBP16.12■□□□□ 0.17
GPNMB-204ENST00000459927 ECE1P42892 770 aa16.12■□□□□ 0.17
GPNMB-204ENST00000459927 GMPSP49915 693 aaPredicted RBP16.12■□□□□ 0.17
GPNMB-204ENST00000459927 HIRAP54198 1017 aaPredicted RBP16.12■□□□□ 0.17
GPNMB-204ENST00000459927 GRAPQ13588 217 aa16.12■□□□□ 0.17
GPNMB-204ENST00000459927 TNIP1Q15025 636 aa16.12■□□□□ 0.17
GPNMB-204ENST00000459927 GRAPLQ8TC17 118 aaPredicted RBP16.12■□□□□ 0.17
GPNMB-204ENST00000459927 CAPNS2Q96L46 248 aa16.12■□□□□ 0.17
GPNMB-204ENST00000459927 TLL2Q9Y6L7 1015 aa16.12■□□□□ 0.17
GPNMB-204ENST00000459927 RAD17O75943 681 aa16.11■□□□□ 0.17
GPNMB-204ENST00000459927 DDX10Q13206 875 aaKnown RBP16.11■□□□□ 0.17
GPNMB-204ENST00000459927 CYP4F22Q6NT55 531 aa16.11■□□□□ 0.17
GPNMB-204ENST00000459927 PLBD2Q8NHP8 589 aa16.11■□□□□ 0.17
GPNMB-204ENST00000459927 ZNF428Q96B54 188 aa16.11■□□□□ 0.17
GPNMB-204ENST00000459927 RUNDC1Q96C34 613 aa16.11■□□□□ 0.17
GPNMB-204ENST00000459927 CNOT7Q9UIV1 285 aaKnown RBP16.11■□□□□ 0.17
GPNMB-204ENST00000459927 SF3B3Q15393 1217 aaKnown RBP16.1■□□□□ 0.17
GPNMB-204ENST00000459927 TMC4Q7Z404 712 aa16.1■□□□□ 0.17
GPNMB-204ENST00000459927 ZC3H15Q8WU90 426 aaKnown RBP16.1■□□□□ 0.17
GPNMB-204ENST00000459927 ISCA1Q9BUE6 129 aa16.1■□□□□ 0.17
GPNMB-204ENST00000459927 BCL2L13Q9BXK5 485 aa16.1■□□□□ 0.17
GPNMB-204ENST00000459927 CHPF2Q9P2E5 772 aa16.1■□□□□ 0.17
GPNMB-204ENST00000459927 ADAMTS8Q9UP79 889 aa16.1■□□□□ 0.17
GPNMB-204ENST00000459927 YDJCA8MPS7 323 aa16.09■□□□□ 0.17
GPNMB-204ENST00000459927 MAP2K2P36507 400 aa16.09■□□□□ 0.17
GPNMB-204ENST00000459927 PAXIP1Q6ZW49 1069 aaPredicted RBP16.09■□□□□ 0.17
GPNMB-204ENST00000459927 SAPCD2Q86UD0 394 aa16.09■□□□□ 0.17
GPNMB-204ENST00000459927 FAM89AQ96GI7 184 aa16.09■□□□□ 0.17
GPNMB-204ENST00000459927 DBF4Q9UBU7 674 aaPredicted RBP16.09■□□□□ 0.17
GPNMB-204ENST00000459927 ATP5J2-PTCD1G3V325 749 aa16.08■□□□□ 0.16
GPNMB-204ENST00000459927 CELF2O95319 508 aaKnown RBP16.08■□□□□ 0.16
GPNMB-204ENST00000459927 GRM1Q13255 1194 aa16.08■□□□□ 0.16
GPNMB-204ENST00000459927 TRIM28Q13263 835 aaKnown RBP16.08■□□□□ 0.16
GPNMB-204ENST00000459927 CDC37L1Q7L3B6 337 aa16.08■□□□□ 0.16
GPNMB-204ENST00000459927 GLIS2Q9BZE0 524 aaPredicted RBP16.08■□□□□ 0.16
GPNMB-204ENST00000459927 NSFL1CQ9UNZ2 370 aaKnown RBP16.08■□□□□ 0.16
GPNMB-204ENST00000459927 H7C1D1 291 aa16.07■□□□□ 0.16
GPNMB-204ENST00000459927 HOXB7P09629 217 aa16.07■□□□□ 0.16
GPNMB-204ENST00000459927 WASHC4Q2M389 1173 aa16.07■□□□□ 0.16
GPNMB-204ENST00000459927 HDGFL1Q5TGJ6 251 aa16.07■□□□□ 0.16
GPNMB-204ENST00000459927 DPF2Q92785 391 aa16.07■□□□□ 0.16
GPNMB-204ENST00000459927 CELF1Q92879 486 aaKnown RBP16.07■□□□□ 0.16
GPNMB-204ENST00000459927 CFAP44Q96MT7 982 aa16.07■□□□□ 0.16
GPNMB-204ENST00000459927 BEGAINQ9BUH8 593 aa16.07■□□□□ 0.16
GPNMB-204ENST00000459927 HYPKQ9NX55 129 aa16.07■□□□□ 0.16
GPNMB-204ENST00000459927 MYBBP1AQ9BQG0 1328 aaKnown RBP16.07■□□□□ 0.16
GPNMB-204ENST00000459927 ANKRD36CQ5JPF3 1778 aa16.07■□□□□ 0.16
GPNMB-204ENST00000459927 TAF1P21675 1872 aa16.07■□□□□ 0.16
GPNMB-204ENST00000459927 TRPM7Q96QT4 1865 aa16.06■□□□□ 0.16
GPNMB-204ENST00000459927 SHTN1A0MZ66 631 aa16.06■□□□□ 0.16
GPNMB-204ENST00000459927 AOC2O75106 756 aa16.06■□□□□ 0.16
GPNMB-204ENST00000459927 DUSP27Q5VZP5 1158 aa16.06■□□□□ 0.16
GPNMB-204ENST00000459927 HHIPL1Q96JK4 782 aa16.06■□□□□ 0.16
GPNMB-204ENST00000459927 POLLQ9UGP5 575 aa16.06■□□□□ 0.16
GPNMB-204ENST00000459927 ZBTB12Q9Y330 459 aaPredicted RBP16.06■□□□□ 0.16
GPNMB-204ENST00000459927 CDHR2Q9BYE9 1310 aa16.05■□□□□ 0.16
GPNMB-204ENST00000459927 RIMBP2O15034 1052 aa16.05■□□□□ 0.16
GPNMB-204ENST00000459927 RPS8P62241 208 aaKnown RBP16.05■□□□□ 0.16
GPNMB-204ENST00000459927 WDR43Q15061 677 aaKnown RBP eCLIP16.05■□□□□ 0.16
GPNMB-204ENST00000459927 USP48Q86UV5 1035 aa16.05■□□□□ 0.16
GPNMB-204ENST00000459927 TRPM4Q8TD43 1214 aa16.05■□□□□ 0.16
GPNMB-204ENST00000459927 ABHD8Q96I13 439 aa16.05■□□□□ 0.16
GPNMB-204ENST00000459927 KCNQ5Q9NR82 932 aa16.05■□□□□ 0.16
GPNMB-204ENST00000459927 C6orf229H3BNL8 230 aa16.04■□□□□ 0.16
GPNMB-204ENST00000459927 PSMD14O00487 310 aa16.04■□□□□ 0.16
GPNMB-204ENST00000459927 GPSM2P81274 684 aa16.04■□□□□ 0.16
GPNMB-204ENST00000459927 RTL5Q5HYW3 569 aaPredicted RBP16.04■□□□□ 0.16
GPNMB-204ENST00000459927 SAMD7Q7Z3H4 446 aa16.04■□□□□ 0.16
GPNMB-204ENST00000459927 LAMB2P55268 1798 aa16.04■□□□□ 0.16
GPNMB-204ENST00000459927 IRS4O14654 1257 aaPredicted RBP16.03■□□□□ 0.16
GPNMB-204ENST00000459927 ZNF853P0CG23 659 aa16.03■□□□□ 0.16
GPNMB-204ENST00000459927 MICALL2Q8IY33 904 aa16.03■□□□□ 0.16
GPNMB-204ENST00000459927 DBNDD1Q9H9R9 158 aa16.03■□□□□ 0.16
GPNMB-204ENST00000459927 MBIPQ9NS73 344 aa16.03■□□□□ 0.16
GPNMB-204ENST00000459927 DOK7Q18PE1 504 aa16.02■□□□□ 0.16
GPNMB-204ENST00000459927 DLK2Q6UY11 383 aa16.02■□□□□ 0.16
GPNMB-204ENST00000459927 RIC3Q7Z5B4 369 aa16.02■□□□□ 0.16
GPNMB-204ENST00000459927 PHAXQ9H814 394 aaKnown RBP16.02■□□□□ 0.16
GPNMB-204ENST00000459927 ZNF408Q9H9D4 720 aa16.02■□□□□ 0.16
GPNMB-204ENST00000459927 POLR2AP24928 1970 aaKnown RBP16.01■□□□□ 0.15
GPNMB-204ENST00000459927 ELL2O00472 640 aaPredicted RBP16.01■□□□□ 0.15
GPNMB-204ENST00000459927 RBM26Q5T8P6 1007 aaKnown RBP16.01■□□□□ 0.15
GPNMB-204ENST00000459927 ZBTB38Q8NAP3 1195 aaPredicted RBP16.01■□□□□ 0.15
GPNMB-204ENST00000459927 TBC1D16Q8TBP0 767 aa16.01■□□□□ 0.15
GPNMB-204ENST00000459927 EYA3Q99504 573 aa16.01■□□□□ 0.15
GPNMB-204ENST00000459927 ZC3H12CQ9C0D7 883 aaKnown RBP16.01■□□□□ 0.15
GPNMB-204ENST00000459927 TSKSQ9UJT2 592 aa16.01■□□□□ 0.15
GPNMB-204ENST00000459927 TBC1D10BQ4KMP7 808 aaPredicted RBP16■□□□□ 0.15
GPNMB-204ENST00000459927 SEC31BQ9NQW1 1179 aa16■□□□□ 0.15
GPNMB-204ENST00000459927 PODXL2Q9NZ53 605 aa16■□□□□ 0.15
GPNMB-204ENST00000459927 APAF1O14727 1248 aa15.99■□□□□ 0.15
GPNMB-204ENST00000459927 CA12O43570 354 aa15.99■□□□□ 0.15
GPNMB-204ENST00000459927 ECE2O60344 883 aa15.99■□□□□ 0.15
GPNMB-204ENST00000459927 EGFRP00533 1210 aa15.99■□□□□ 0.15
GPNMB-204ENST00000459927 VIL1P09327 827 aaKnown RBP15.99■□□□□ 0.15
GPNMB-204ENST00000459927 RPS12P25398 132 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms