RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 PCCAP05165 728 aaPredicted RBP22.15■■□□□ 1.14
USP39-208ENST00000455732 VEGFAP15692 232 aaPredicted RBP22.15■■□□□ 1.14
USP39-208ENST00000455732 IARSP41252 1262 aaKnown RBP22.15■■□□□ 1.14
USP39-208ENST00000455732 NEXNQ0ZGT2 675 aa22.15■■□□□ 1.14
USP39-208ENST00000455732 COL4A5P29400 1685 aa22.14■■□□□ 1.14
USP39-208ENST00000455732 BBOX1O75936 387 aa22.14■■□□□ 1.13
USP39-208ENST00000455732 HSP90B1P14625 803 aaKnown RBP22.14■■□□□ 1.13
USP39-208ENST00000455732 SF3B3Q15393 1217 aaKnown RBP22.14■■□□□ 1.13
USP39-208ENST00000455732 RTL5Q5HYW3 569 aaPredicted RBP22.14■■□□□ 1.13
USP39-208ENST00000455732 DDX46Q7L014 1031 aaKnown RBP22.14■■□□□ 1.13
USP39-208ENST00000455732 SCN4AP35499 1836 aa22.14■■□□□ 1.13
USP39-208ENST00000455732 MYH3P11055 1940 aa22.14■■□□□ 1.13
USP39-208ENST00000455732 IRS4O14654 1257 aaPredicted RBP22.13■■□□□ 1.13
USP39-208ENST00000455732 GRAPQ13588 217 aa22.13■■□□□ 1.13
USP39-208ENST00000455732 GRAPLQ8TC17 118 aaPredicted RBP22.13■■□□□ 1.13
USP39-208ENST00000455732 DNAAF4Q8WXU2 420 aa22.13■■□□□ 1.13
USP39-208ENST00000455732 COL4A1P02462 1669 aa22.13■■□□□ 1.13
USP39-208ENST00000455732 NEURL1BA8MQ27 555 aa22.12■■□□□ 1.13
USP39-208ENST00000455732 DDNO94850 711 aaPredicted RBP22.12■■□□□ 1.13
USP39-208ENST00000455732 SP8Q8IXZ3 490 aa22.12■■□□□ 1.13
USP39-208ENST00000455732 CDHR2Q9BYE9 1310 aa22.11■■□□□ 1.13
USP39-208ENST00000455732 FZD9O00144 591 aa22.11■■□□□ 1.13
USP39-208ENST00000455732 CT47B1P0C2W7 299 aaPredicted RBP22.11■■□□□ 1.13
USP39-208ENST00000455732 ZNF541Q9H0D2 1346 aa22.1■■□□□ 1.13
USP39-208ENST00000455732 FSTL1Q12841 308 aa22.1■■□□□ 1.13
USP39-208ENST00000455732 CWF19L2Q2TBE0 894 aaKnown RBP22.1■■□□□ 1.13
USP39-208ENST00000455732 LINS1Q8NG48 757 aa22.1■■□□□ 1.13
USP39-208ENST00000455732 RTFDC1Q9BY42 306 aaPredicted RBP22.09■■□□□ 1.13
USP39-208ENST00000455732 TMX4Q9H1E5 349 aaPredicted RBP22.09■■□□□ 1.13
USP39-208ENST00000455732 IFFO2Q5TF58 517 aa22.08■■□□□ 1.13
USP39-208ENST00000455732 TMC4Q7Z404 712 aa22.08■■□□□ 1.13
USP39-208ENST00000455732 MRPL50Q8N5N7 158 aaKnown RBP22.08■■□□□ 1.13
USP39-208ENST00000455732 JDP2Q8WYK2 163 aa22.08■■□□□ 1.13
USP39-208ENST00000455732 CELF1Q92879 486 aaKnown RBP22.08■■□□□ 1.13
USP39-208ENST00000455732 L3MBTL3Q96JM7 780 aaPredicted RBP22.08■■□□□ 1.13
USP39-208ENST00000455732 DUOX1Q9NRD9 1551 aa22.08■■□□□ 1.12
USP39-208ENST00000455732 LTBP1Q14766 1721 aa22.07■■□□□ 1.12
USP39-208ENST00000455732 GCKRQ14397 625 aa22.07■■□□□ 1.12
USP39-208ENST00000455732 ALDH1L2Q3SY69 923 aa22.07■■□□□ 1.12
USP39-208ENST00000455732 JARID2Q92833 1246 aaPredicted RBP22.07■■□□□ 1.12
USP39-208ENST00000455732 VPS33BQ9H267 617 aa22.07■■□□□ 1.12
USP39-208ENST00000455732 H7C1W4 665 aa22.06■■□□□ 1.12
USP39-208ENST00000455732 PDE8AO60658 829 aa22.06■■□□□ 1.12
USP39-208ENST00000455732 HNRNPUQ00839 825 aaKnown RBP eCLIP22.06■■□□□ 1.12
USP39-208ENST00000455732 BEND3Q5T5X7 828 aa22.06■■□□□ 1.12
USP39-208ENST00000455732 LARGE2Q8N3Y3 721 aa22.06■■□□□ 1.12
USP39-208ENST00000455732 MPNDQ8N594 471 aa22.06■■□□□ 1.12
USP39-208ENST00000455732 SMC1BQ8NDV3 1235 aa22.06■■□□□ 1.12
USP39-208ENST00000455732 SSH1Q8WYL5 1049 aa22.06■■□□□ 1.12
USP39-208ENST00000455732 F6X3S4 739 aa22.05■■□□□ 1.12
USP39-208ENST00000455732 DPP8Q6V1X1 898 aaPredicted RBP22.05■■□□□ 1.12
USP39-208ENST00000455732 PTPRCP08575 1304 aa22.05■■□□□ 1.12
USP39-208ENST00000455732 CCDC152Q4G0S7 254 aa22.04■■□□□ 1.12
USP39-208ENST00000455732 SUPT20HQ8NEM7 779 aa22.04■■□□□ 1.12
USP39-208ENST00000455732 PPIP5K2O43314 1243 aa22.03■■□□□ 1.12
USP39-208ENST00000455732 CASP7P55210 303 aa22.03■■□□□ 1.12
USP39-208ENST00000455732 CTSWP56202 376 aa22.03■■□□□ 1.12
USP39-208ENST00000455732 RPS8P62241 208 aaKnown RBP22.03■■□□□ 1.12
USP39-208ENST00000455732 AOC3Q16853 763 aa22.03■■□□□ 1.12
USP39-208ENST00000455732 GPC2Q8N158 579 aa22.03■■□□□ 1.12
USP39-208ENST00000455732 PLA2G12BQ9BX93 195 aa22.03■■□□□ 1.12
USP39-208ENST00000455732 SEC31BQ9NQW1 1179 aa22.03■■□□□ 1.12
USP39-208ENST00000455732 IQCA1LA6NCM1 817 aa22.02■■□□□ 1.12
USP39-208ENST00000455732 UBE3BQ7Z3V4 1068 aa22.02■■□□□ 1.12
USP39-208ENST00000455732 SPEF2Q9C093 1822 aa22.01■■□□□ 1.11
USP39-208ENST00000455732 RTL9Q8NET4 1388 aa22.01■■□□□ 1.11
USP39-208ENST00000455732 ALDH1L1O75891 902 aa22.01■■□□□ 1.11
USP39-208ENST00000455732 BRPF1P55201 1214 aaPredicted RBP22.01■■□□□ 1.11
USP39-208ENST00000455732 EIF6P56537 245 aaKnown RBP22.01■■□□□ 1.11
USP39-208ENST00000455732 NIM1KQ8IY84 436 aa22.01■■□□□ 1.11
USP39-208ENST00000455732 DNAJC5GQ8N7S2 189 aa22.01■■□□□ 1.11
USP39-208ENST00000455732 TAF1DQ9H5J8 278 aaPredicted RBP22.01■■□□□ 1.11
USP39-208ENST00000455732 ADAMTSL1Q8N6G6 1762 aa22.01■■□□□ 1.11
USP39-208ENST00000455732 POTEIP0CG38 1075 aa22■■□□□ 1.11
USP39-208ENST00000455732 POTEJP0CG39 1038 aa22■■□□□ 1.11
USP39-208ENST00000455732 KIAA2012Q0VF49 1180 aa22■■□□□ 1.11
USP39-208ENST00000455732 SMC4Q9NTJ3 1288 aa22■■□□□ 1.11
USP39-208ENST00000455732 ZBED9Q6R2W3 1325 aa22■■□□□ 1.11
USP39-208ENST00000455732 HTRA3P83110 453 aa21.99■■□□□ 1.11
USP39-208ENST00000455732 TTLL11Q8NHH1 800 aa21.99■■□□□ 1.11
USP39-208ENST00000455732 CCDC85AQ96PX6 553 aaPredicted RBP21.99■■□□□ 1.11
USP39-208ENST00000455732 BCL2L13Q9BXK5 485 aa21.99■■□□□ 1.11
USP39-208ENST00000455732 SRCIN1Q9C0H9 1055 aa21.99■■□□□ 1.11
USP39-208ENST00000455732 HACL1Q9UJ83 578 aa21.99■■□□□ 1.11
USP39-208ENST00000455732 NSFL1CQ9UNZ2 370 aaKnown RBP21.99■■□□□ 1.11
USP39-208ENST00000455732 GPSM2P81274 684 aa21.98■■□□□ 1.11
USP39-208ENST00000455732 KLRG1Q96E93 195 aa21.98■■□□□ 1.11
USP39-208ENST00000455732 ZNRF3Q9ULT6 936 aa21.98■■□□□ 1.11
USP39-208ENST00000455732 GRM8O00222 908 aa21.97■■□□□ 1.11
USP39-208ENST00000455732 SLC4A10Q6U841 1118 aa21.97■■□□□ 1.11
USP39-208ENST00000455732 POLLQ9UGP5 575 aa21.97■■□□□ 1.11
USP39-208ENST00000455732 GJA3Q9Y6H8 435 aa21.97■■□□□ 1.11
USP39-208ENST00000455732 EPHX2P34913 555 aa21.96■■□□□ 1.11
USP39-208ENST00000455732 RARSP54136 660 aaKnown RBP21.96■■□□□ 1.11
USP39-208ENST00000455732 CXCL9Q07325 125 aa21.96■■□□□ 1.11
USP39-208ENST00000455732 CHADLQ6NUI6 762 aa21.96■■□□□ 1.11
USP39-208ENST00000455732 CDC5LQ99459 802 aaKnown RBP21.96■■□□□ 1.11
USP39-208ENST00000455732 PODXL2Q9NZ53 605 aa21.96■■□□□ 1.11
USP39-208ENST00000455732 CSF1RP07333 972 aa21.95■■□□□ 1.1
USP39-208ENST00000455732 SCNN1DP51172 638 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms