RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 PPP1R42Q7Z4L9 355 aa13.75□□□□□ -0.21
SCN9A-205ENST00000454569 HCLS1P14317 486 aaPredicted RBP13.75□□□□□ -0.21
SCN9A-205ENST00000454569 DDR1Q08345 913 aa13.75□□□□□ -0.21
SCN9A-205ENST00000454569 ERFEQ4G0M1 354 aa13.75□□□□□ -0.21
SCN9A-205ENST00000454569 C3orf67Q6ZVT6 689 aa13.75□□□□□ -0.21
SCN9A-205ENST00000454569 UTP14AQ9BVJ6 771 aaKnown RBP13.75□□□□□ -0.21
SCN9A-205ENST00000454569 CHMP4BQ9H444 224 aaKnown RBP13.75□□□□□ -0.21
SCN9A-205ENST00000454569 SPEF2Q9C093 1822 aa13.74□□□□□ -0.21
SCN9A-205ENST00000454569 TNRC6CQ9HCJ0 1690 aaKnown RBP13.74□□□□□ -0.21
SCN9A-205ENST00000454569 ANKRD31Q8N7Z5 1873 aa13.74□□□□□ -0.21
SCN9A-205ENST00000454569 HDAC1Q13547 482 aaPredicted RBP13.74□□□□□ -0.21
SCN9A-205ENST00000454569 PARP10Q53GL7 1025 aa13.74□□□□□ -0.21
SCN9A-205ENST00000454569 PAXIP1Q6ZW49 1069 aaPredicted RBP13.74□□□□□ -0.21
SCN9A-205ENST00000454569 RPAP2Q8IXW5 612 aaPredicted RBP13.74□□□□□ -0.21
SCN9A-205ENST00000454569 CCDC85AQ96PX6 553 aaPredicted RBP13.74□□□□□ -0.21
SCN9A-205ENST00000454569 SETDB2Q96T68 719 aa13.74□□□□□ -0.21
SCN9A-205ENST00000454569 ABCC12Q96J65 1359 aa13.74□□□□□ -0.21
SCN9A-205ENST00000454569 NRXN2Q9P2S2 1712 aa13.73□□□□□ -0.21
SCN9A-205ENST00000454569 IRS4O14654 1257 aaPredicted RBP13.73□□□□□ -0.21
SCN9A-205ENST00000454569 RABL6Q3YEC7 729 aaPredicted RBP13.73□□□□□ -0.21
SCN9A-205ENST00000454569 LMBR1LQ6UX01 489 aa13.73□□□□□ -0.21
SCN9A-205ENST00000454569 KLHDC4Q8TBB5 520 aa13.73□□□□□ -0.21
SCN9A-205ENST00000454569 CDHR2Q9BYE9 1310 aa13.73□□□□□ -0.21
SCN9A-205ENST00000454569 RFX5P48382 616 aaPredicted RBP13.72□□□□□ -0.21
SCN9A-205ENST00000454569 MTX1Q13505 466 aa13.72□□□□□ -0.21
SCN9A-205ENST00000454569 FLAD1Q8NFF5 587 aa13.72□□□□□ -0.21
SCN9A-205ENST00000454569 SSH3Q8TE77 659 aa13.72□□□□□ -0.21
SCN9A-205ENST00000454569 PA2G4Q9UQ80 394 aaKnown RBP13.72□□□□□ -0.21
SCN9A-205ENST00000454569 SH3TC1Q8TE82 1336 aa13.72□□□□□ -0.21
SCN9A-205ENST00000454569 POLRMTO00411 1230 aaKnown RBP13.71□□□□□ -0.21
SCN9A-205ENST00000454569 SRGAP3O43295 1099 aa13.71□□□□□ -0.21
SCN9A-205ENST00000454569 PLA2G12BQ9BX93 195 aa13.71□□□□□ -0.21
SCN9A-205ENST00000454569 RWDD1Q9H446 243 aaPredicted RBP13.71□□□□□ -0.21
SCN9A-205ENST00000454569 CREBZFQ9NS37 354 aa13.71□□□□□ -0.21
SCN9A-205ENST00000454569 CARMIL3Q8ND23 1372 aa13.71□□□□□ -0.22
SCN9A-205ENST00000454569 SERPINB2P05120 415 aa13.71□□□□□ -0.22
SCN9A-205ENST00000454569 CSF1RP07333 972 aa13.71□□□□□ -0.22
SCN9A-205ENST00000454569 HMGB2P26583 209 aaKnown RBP13.71□□□□□ -0.22
SCN9A-205ENST00000454569 NBPF5PQ86XG9 351 aaPredicted RBP13.71□□□□□ -0.22
SCN9A-205ENST00000454569 REM2Q8IYK8 340 aaPredicted RBP13.71□□□□□ -0.22
SCN9A-205ENST00000454569 TTLL11Q8NHH1 800 aa13.71□□□□□ -0.22
SCN9A-205ENST00000454569 DCTPP1Q9H773 170 aa13.71□□□□□ -0.22
SCN9A-205ENST00000454569 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.71□□□□□ -0.22
SCN9A-205ENST00000454569 PDE8AO60658 829 aa13.7□□□□□ -0.22
SCN9A-205ENST00000454569 R3HDM1Q15032 1099 aaKnown RBP13.7□□□□□ -0.22
SCN9A-205ENST00000454569 PRR5LQ6MZQ0 368 aa13.7□□□□□ -0.22
SCN9A-205ENST00000454569 SMC5Q8IY18 1101 aa13.7□□□□□ -0.22
SCN9A-205ENST00000454569 RNF25Q96BH1 459 aaPredicted RBP13.7□□□□□ -0.22
SCN9A-205ENST00000454569 ZNF594Q96JF6 807 aaPredicted RBP13.7□□□□□ -0.22
SCN9A-205ENST00000454569 EXOC6BQ9Y2D4 811 aa13.7□□□□□ -0.22
SCN9A-205ENST00000454569 PSDA5PKW4 1024 aaPredicted RBP13.69□□□□□ -0.22
SCN9A-205ENST00000454569 MMP10P09238 476 aa13.69□□□□□ -0.22
SCN9A-205ENST00000454569 MNX1P50219 401 aaPredicted RBP13.69□□□□□ -0.22
SCN9A-205ENST00000454569 GSE1Q14687 1217 aa13.69□□□□□ -0.22
SCN9A-205ENST00000454569 FAM161AQ3B820 660 aa13.69□□□□□ -0.22
SCN9A-205ENST00000454569 SLC10A5Q5PT55 438 aa13.69□□□□□ -0.22
SCN9A-205ENST00000454569 CENPQQ7L2Z9 268 aaPredicted RBP13.69□□□□□ -0.22
SCN9A-205ENST00000454569 NLGN1Q8N2Q7 840 aa13.69□□□□□ -0.22
SCN9A-205ENST00000454569 GREM2Q9H772 168 aa13.69□□□□□ -0.22
SCN9A-205ENST00000454569 APBB1O00213 710 aa13.68□□□□□ -0.22
SCN9A-205ENST00000454569 SMARCA5O60264 1052 aaPredicted RBP13.68□□□□□ -0.22
SCN9A-205ENST00000454569 CTSWP56202 376 aa13.68□□□□□ -0.22
SCN9A-205ENST00000454569 PTPN12Q05209 780 aaKnown RBP13.68□□□□□ -0.22
SCN9A-205ENST00000454569 TPTE2Q6XPS3 522 aa13.68□□□□□ -0.22
SCN9A-205ENST00000454569 SEC31BQ9NQW1 1179 aa13.68□□□□□ -0.22
SCN9A-205ENST00000454569 PDZRN3Q9UPQ7 1066 aa13.68□□□□□ -0.22
SCN9A-205ENST00000454569 CHMP3Q9Y3E7 222 aa13.68□□□□□ -0.22
SCN9A-205ENST00000454569 CLEC11AQ9Y240 323 aa13.67□□□□□ -0.22
SCN9A-205ENST00000454569 CACNA1SQ13698 1873 aa13.67□□□□□ -0.22
SCN9A-205ENST00000454569 SURF6O75683 361 aaKnown RBP13.66□□□□□ -0.22
SCN9A-205ENST00000454569 GTF2E1P29083 439 aaPredicted RBP13.66□□□□□ -0.22
SCN9A-205ENST00000454569 SLC51AQ86UW1 340 aa13.66□□□□□ -0.22
SCN9A-205ENST00000454569 PUS3Q9BZE2 481 aaKnown RBP13.66□□□□□ -0.22
SCN9A-205ENST00000454569 NYXQ9GZU5 481 aa13.66□□□□□ -0.22
SCN9A-205ENST00000454569 SIL1Q9H173 461 aa13.66□□□□□ -0.22
SCN9A-205ENST00000454569 COL11A2P13942 1736 aaPredicted RBP13.66□□□□□ -0.22
SCN9A-205ENST00000454569 HMMRO75330 724 aa13.66□□□□□ -0.22
SCN9A-205ENST00000454569 ZBTB7AO95365 584 aa13.66□□□□□ -0.22
SCN9A-205ENST00000454569 PRR29P0C7W0 189 aa13.66□□□□□ -0.22
SCN9A-205ENST00000454569 PDE4AP27815 886 aa13.66□□□□□ -0.22
SCN9A-205ENST00000454569 C16orf71Q8IYS4 520 aaPredicted RBP13.66□□□□□ -0.22
SCN9A-205ENST00000454569 CNBD1Q8NA66 436 aa13.66□□□□□ -0.22
SCN9A-205ENST00000454569 BCL11AQ9H165 835 aa13.66□□□□□ -0.22
SCN9A-205ENST00000454569 HDAC5Q9UQL6 1122 aa13.66□□□□□ -0.22
SCN9A-205ENST00000454569 NOP58Q9Y2X3 529 aaKnown RBP13.66□□□□□ -0.22
SCN9A-205ENST00000454569 A0A1B0GUL6 1792 aa13.65□□□□□ -0.22
SCN9A-205ENST00000454569 SASH1O94885 1247 aa13.65□□□□□ -0.22
SCN9A-205ENST00000454569 ITGA6P23229 1130 aa13.65□□□□□ -0.22
SCN9A-205ENST00000454569 LRRC24Q50LG9 513 aa13.65□□□□□ -0.22
SCN9A-205ENST00000454569 ANKRD45Q5TZF3 282 aa13.65□□□□□ -0.22
SCN9A-205ENST00000454569 NUCB1Q02818 461 aa13.64□□□□□ -0.23
SCN9A-205ENST00000454569 SF3B3Q15393 1217 aaKnown RBP13.64□□□□□ -0.23
SCN9A-205ENST00000454569 ATG9AQ7Z3C6 839 aa13.64□□□□□ -0.23
SCN9A-205ENST00000454569 SPRYD3Q8NCJ5 442 aa13.64□□□□□ -0.23
SCN9A-205ENST00000454569 GCC1Q96CN9 775 aa13.64□□□□□ -0.23
SCN9A-205ENST00000454569 COPRSQ9NQ92 184 aa13.64□□□□□ -0.23
SCN9A-205ENST00000454569 HS6ST3Q8IZP7 471 aa13.63□□□□□ -0.23
SCN9A-205ENST00000454569 OTUD7AQ8TE49 926 aaPredicted RBP13.63□□□□□ -0.23
SCN9A-205ENST00000454569 LNPKQ9C0E8 428 aa13.63□□□□□ -0.23
SCN9A-205ENST00000454569 PARP3Q9Y6F1 533 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms