RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 IBTKQ9P2D0 1353 aaPredicted RBP11.12□□□□□ -0.63
COL28A1-205ENST00000453441 NUP98P52948 1817 aa11.12□□□□□ -0.63
COL28A1-205ENST00000453441 BRPF1P55201 1214 aaPredicted RBP11.11□□□□□ -0.63
COL28A1-205ENST00000453441 ANKRD13DQ6ZTN6 518 aa11.11□□□□□ -0.63
COL28A1-205ENST00000453441 BCL2L12Q9HB09 334 aa11.11□□□□□ -0.63
COL28A1-205ENST00000453441 PARP3Q9Y6F1 533 aa11.11□□□□□ -0.63
COL28A1-205ENST00000453441 ANKRD36CQ5JPF3 1778 aa11.11□□□□□ -0.63
COL28A1-205ENST00000453441 PTPRCP08575 1304 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 RNF123Q5XPI4 1314 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 ANXA1P04083 346 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 MMP10P09238 476 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 TM4SF1P30408 202 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 PTGER2P43116 358 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 MAP3K9P80192 1104 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 AIMP1Q12904 312 aaKnown RBP11.1□□□□□ -0.63
COL28A1-205ENST00000453441 FLIIQ13045 1269 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 PARP10Q53GL7 1025 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 KSR2Q6VAB6 950 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 TTLL7Q6ZT98 887 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 SMIM5Q71RC9 77 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 SETDB2Q96T68 719 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 EMILIN3Q9NT22 766 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 LHX6Q9UPM6 363 aa11.1□□□□□ -0.63
COL28A1-205ENST00000453441 KIF16BQ96L93 1317 aa11.09□□□□□ -0.63
COL28A1-205ENST00000453441 ARFGEF2Q9Y6D5 1785 aa11.09□□□□□ -0.63
COL28A1-205ENST00000453441 TCIRG1Q13488 830 aa11.09□□□□□ -0.63
COL28A1-205ENST00000453441 NFIXQ14938 502 aa11.09□□□□□ -0.63
COL28A1-205ENST00000453441 MSL1Q68DK7 614 aa11.09□□□□□ -0.63
COL28A1-205ENST00000453441 RIC3Q7Z5B4 369 aa11.09□□□□□ -0.63
COL28A1-205ENST00000453441 ZNF687Q8N1G0 1237 aa11.09□□□□□ -0.63
COL28A1-205ENST00000453441 NYXQ9GZU5 481 aa11.09□□□□□ -0.63
COL28A1-205ENST00000453441 ZBTB3Q9H5J0 574 aa11.09□□□□□ -0.63
COL28A1-205ENST00000453441 SMC4Q9NTJ3 1288 aa11.09□□□□□ -0.63
COL28A1-205ENST00000453441 PPP1R1BQ9UD71 204 aaPredicted RBP11.09□□□□□ -0.63
COL28A1-205ENST00000453441 PDZRN3Q9UPQ7 1066 aa11.09□□□□□ -0.63
COL28A1-205ENST00000453441 POLRMTO00411 1230 aaKnown RBP11.08□□□□□ -0.64
COL28A1-205ENST00000453441 RARSP54136 660 aaKnown RBP11.08□□□□□ -0.64
COL28A1-205ENST00000453441 NEXNQ0ZGT2 675 aa11.08□□□□□ -0.64
COL28A1-205ENST00000453441 TRIM28Q13263 835 aaKnown RBP11.08□□□□□ -0.64
COL28A1-205ENST00000453441 FKBP5Q13451 457 aaPredicted RBP11.08□□□□□ -0.64
COL28A1-205ENST00000453441 TBC1D9BQ66K14 1250 aa11.08□□□□□ -0.64
COL28A1-205ENST00000453441 ZNF34Q8IZ26 560 aa11.08□□□□□ -0.64
COL28A1-205ENST00000453441 MRPL50Q8N5N7 158 aaKnown RBP11.08□□□□□ -0.64
COL28A1-205ENST00000453441 SSH1Q8WYL5 1049 aa11.08□□□□□ -0.64
COL28A1-205ENST00000453441 PHAXQ9H814 394 aaKnown RBP11.08□□□□□ -0.64
COL28A1-205ENST00000453441 NIP7Q9Y221 180 aaKnown RBP eCLIP11.08□□□□□ -0.64
COL28A1-205ENST00000453441 NRXN2Q9P2S2 1712 aa11.08□□□□□ -0.64
COL28A1-205ENST00000453441 PXDNLA1KZ92 1463 aa11.07□□□□□ -0.64
COL28A1-205ENST00000453441 IPO8O15397 1037 aaKnown RBP11.07□□□□□ -0.64
COL28A1-205ENST00000453441 HSP90B1P14625 803 aaKnown RBP11.07□□□□□ -0.64
COL28A1-205ENST00000453441 E2F4Q16254 413 aa11.07□□□□□ -0.64
COL28A1-205ENST00000453441 HLFQ16534 295 aa11.07□□□□□ -0.64
COL28A1-205ENST00000453441 TPTE2Q6XPS3 522 aa11.07□□□□□ -0.64
COL28A1-205ENST00000453441 PPP1R42Q7Z4L9 355 aa11.07□□□□□ -0.64
COL28A1-205ENST00000453441 ARHGAP45Q92619 1136 aa11.07□□□□□ -0.64
COL28A1-205ENST00000453441 METTL22Q9BUU2 404 aaPredicted RBP11.07□□□□□ -0.64
COL28A1-205ENST00000453441 CD2APQ9Y5K6 639 aa11.07□□□□□ -0.64
COL28A1-205ENST00000453441 KIF13BQ9NQT8 1826 aa11.07□□□□□ -0.64
COL28A1-205ENST00000453441 PI4KAP2A4QPH2 592 aa11.06□□□□□ -0.64
COL28A1-205ENST00000453441 TCERG1O14776 1098 aaKnown RBP11.06□□□□□ -0.64
COL28A1-205ENST00000453441 SERPINB2P05120 415 aa11.06□□□□□ -0.64
COL28A1-205ENST00000453441 ST5P78524 1137 aa11.06□□□□□ -0.64
COL28A1-205ENST00000453441 DDR1Q08345 913 aa11.06□□□□□ -0.64
COL28A1-205ENST00000453441 G2E3Q7L622 706 aa11.06□□□□□ -0.64
COL28A1-205ENST00000453441 NBPF5PQ86XG9 351 aaPredicted RBP11.06□□□□□ -0.64
COL28A1-205ENST00000453441 PI4KAP1Q8N8J0 262 aa11.06□□□□□ -0.64
COL28A1-205ENST00000453441 CNBD1Q8NA66 436 aa11.06□□□□□ -0.64
COL28A1-205ENST00000453441 CCDC191Q8NCU4 936 aa11.06□□□□□ -0.64
COL28A1-205ENST00000453441 DNAAF4Q8WXU2 420 aa11.06□□□□□ -0.64
COL28A1-205ENST00000453441 YTHDC1Q96MU7 727 aaKnown RBP11.06□□□□□ -0.64
COL28A1-205ENST00000453441 ISCA1Q9BUE6 129 aa11.06□□□□□ -0.64
COL28A1-205ENST00000453441 API5Q9BZZ5 524 aaKnown RBP11.06□□□□□ -0.64
COL28A1-205ENST00000453441 MAP3K2Q9Y2U5 619 aa11.06□□□□□ -0.64
COL28A1-205ENST00000453441 AFDNP55196 1824 aaKnown RBP11.06□□□□□ -0.64
COL28A1-205ENST00000453441 RIC1Q4ADV7 1423 aa11.06□□□□□ -0.64
COL28A1-205ENST00000453441 C10orf71Q711Q0 1435 aa11.06□□□□□ -0.64
COL28A1-205ENST00000453441 ADCY9O60503 1353 aa11.05□□□□□ -0.64
COL28A1-205ENST00000453441 NPHP1O15259 732 aa11.05□□□□□ -0.64
COL28A1-205ENST00000453441 EVI5O60447 810 aa11.05□□□□□ -0.64
COL28A1-205ENST00000453441 BICDL1Q6ZP65 573 aa11.05□□□□□ -0.64
COL28A1-205ENST00000453441 LINS1Q8NG48 757 aa11.05□□□□□ -0.64
COL28A1-205ENST00000453441 UTP14AQ9BVJ6 771 aaKnown RBP11.05□□□□□ -0.64
COL28A1-205ENST00000453441 TGFB2P61812 414 aa11.04□□□□□ -0.64
COL28A1-205ENST00000453441 NLRP10Q86W26 655 aa11.04□□□□□ -0.64
COL28A1-205ENST00000453441 CWC25Q9NXE8 425 aaPredicted RBP11.04□□□□□ -0.64
COL28A1-205ENST00000453441 ALDH1L1O75891 902 aa11.03□□□□□ -0.64
COL28A1-205ENST00000453441 MS4A1P11836 297 aa11.03□□□□□ -0.64
COL28A1-205ENST00000453441 GPTP24298 496 aa11.03□□□□□ -0.64
COL28A1-205ENST00000453441 GTF2E1P29083 439 aaPredicted RBP11.03□□□□□ -0.64
COL28A1-205ENST00000453441 PDE6BP35913 854 aa11.03□□□□□ -0.64
COL28A1-205ENST00000453441 PRR5LQ6MZQ0 368 aa11.03□□□□□ -0.64
COL28A1-205ENST00000453441 MYD88Q99836 296 aa11.03□□□□□ -0.64
COL28A1-205ENST00000453441 BRIP1Q9BX63 1249 aa11.03□□□□□ -0.64
COL28A1-205ENST00000453441 BCL2L13Q9BXK5 485 aa11.03□□□□□ -0.64
COL28A1-205ENST00000453441 ARIH1Q9Y4X5 557 aaPredicted RBP11.03□□□□□ -0.64
COL28A1-205ENST00000453441 UBN2Q6ZU65 1347 aa11.03□□□□□ -0.64
COL28A1-205ENST00000453441 SH3TC1Q8TE82 1336 aa11.03□□□□□ -0.64
COL28A1-205ENST00000453441 N4BP2Q86UW6 1770 aaPredicted RBP11.03□□□□□ -0.64
COL28A1-205ENST00000453441 NTSR2O95665 410 aa11.02□□□□□ -0.65
COL28A1-205ENST00000453441 CCT4P50991 539 aaKnown RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms