RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 KIAA2012Q0VF49 1180 aa17.3■□□□□ 0.36
HMGB3-204ENST00000448905 HDGFL1Q5TGJ6 251 aa17.3■□□□□ 0.36
HMGB3-204ENST00000448905 CCDC146Q8IYE0 955 aa17.3■□□□□ 0.36
HMGB3-204ENST00000448905 PLBD2Q8NHP8 589 aa17.3■□□□□ 0.36
HMGB3-204ENST00000448905 HSP90B1P14625 803 aaKnown RBP17.29■□□□□ 0.36
HMGB3-204ENST00000448905 LBX1P52954 281 aa17.29■□□□□ 0.36
HMGB3-204ENST00000448905 ZC3H15Q8WU90 426 aaKnown RBP17.29■□□□□ 0.36
HMGB3-204ENST00000448905 HYPKQ9NX55 129 aa17.29■□□□□ 0.36
HMGB3-204ENST00000448905 SNED1Q8TER0 1413 aa17.29■□□□□ 0.36
HMGB3-204ENST00000448905 H7C1D1 291 aa17.28■□□□□ 0.36
HMGB3-204ENST00000448905 FMR1Q06787 632 aaKnown RBP eCLIP17.28■□□□□ 0.368e-19■■■■■ 65.9
HMGB3-204ENST00000448905 GPR101Q96P66 508 aaPredicted RBP17.28■□□□□ 0.36
HMGB3-204ENST00000448905 CHMP4AQ9BY43 222 aa17.28■□□□□ 0.36
HMGB3-204ENST00000448905 CHPF2Q9P2E5 772 aa17.28■□□□□ 0.36
HMGB3-204ENST00000448905 RAD17O75943 681 aa17.27■□□□□ 0.36
HMGB3-204ENST00000448905 GMPSP49915 693 aaPredicted RBP17.27■□□□□ 0.36
HMGB3-204ENST00000448905 WASHC4Q2M389 1173 aa17.27■□□□□ 0.36
HMGB3-204ENST00000448905 CAPNS2Q96L46 248 aa17.27■□□□□ 0.36
HMGB3-204ENST00000448905 CFAP44Q96MT7 982 aa17.27■□□□□ 0.36
HMGB3-204ENST00000448905 TRIM35Q9UPQ4 493 aa17.27■□□□□ 0.36
HMGB3-204ENST00000448905 CDHR2Q9BYE9 1310 aa17.26■□□□□ 0.35
HMGB3-204ENST00000448905 MAP2K2P36507 400 aa17.26■□□□□ 0.35
HMGB3-204ENST00000448905 CALD1Q05682 793 aaKnown RBP17.26■□□□□ 0.35
HMGB3-204ENST00000448905 GRM1Q13255 1194 aa17.26■□□□□ 0.35
HMGB3-204ENST00000448905 CST9Q5W186 159 aa17.26■□□□□ 0.35
HMGB3-204ENST00000448905 CDC37L1Q7L3B6 337 aa17.26■□□□□ 0.35
HMGB3-204ENST00000448905 FAM89AQ96GI7 184 aa17.26■□□□□ 0.35
HMGB3-204ENST00000448905 CNOT7Q9UIV1 285 aaKnown RBP17.26■□□□□ 0.35
HMGB3-204ENST00000448905 NSFL1CQ9UNZ2 370 aaKnown RBP17.26■□□□□ 0.35
HMGB3-204ENST00000448905 ADAMTS8Q9UP79 889 aa17.26■□□□□ 0.35
HMGB3-204ENST00000448905 COL4A5P29400 1685 aa17.26■□□□□ 0.35
HMGB3-204ENST00000448905 NUP98P52948 1817 aa17.26■□□□□ 0.35
HMGB3-204ENST00000448905 TRAF5O00463 557 aa17.25■□□□□ 0.35
HMGB3-204ENST00000448905 SF3B3Q15393 1217 aaKnown RBP17.25■□□□□ 0.35
HMGB3-204ENST00000448905 KRT24Q2M2I5 525 aa17.25■□□□□ 0.35
HMGB3-204ENST00000448905 PGAP2Q9UHJ9 254 aa17.25■□□□□ 0.35
HMGB3-204ENST00000448905 TLL2Q9Y6L7 1015 aa17.25■□□□□ 0.35
HMGB3-204ENST00000448905 DLG5Q8TDM6 1919 aa17.25■□□□□ 0.35
HMGB3-204ENST00000448905 ADAMTSL1Q8N6G6 1762 aa17.25■□□□□ 0.35
HMGB3-204ENST00000448905 C6orf229H3BNL8 230 aa17.24■□□□□ 0.35
HMGB3-204ENST00000448905 CELF2O95319 508 aaKnown RBP17.24■□□□□ 0.35
HMGB3-204ENST00000448905 TRIM28Q13263 835 aaKnown RBP17.24■□□□□ 0.35
HMGB3-204ENST00000448905 RIC3Q7Z5B4 369 aa17.24■□□□□ 0.35
HMGB3-204ENST00000448905 EYA3Q99504 573 aa17.24■□□□□ 0.35
HMGB3-204ENST00000448905 ATP5J2-PTCD1G3V325 749 aa17.23■□□□□ 0.35
HMGB3-204ENST00000448905 G3V3G9 751 aa17.23■□□□□ 0.35
HMGB3-204ENST00000448905 DCAF8Q5TAQ9 597 aa17.23■□□□□ 0.35
HMGB3-204ENST00000448905 DUSP27Q5VZP5 1158 aa17.23■□□□□ 0.35
HMGB3-204ENST00000448905 CYP4F22Q6NT55 531 aa17.23■□□□□ 0.35
HMGB3-204ENST00000448905 DPF2Q92785 391 aa17.23■□□□□ 0.35
HMGB3-204ENST00000448905 ISCA1Q9BUE6 129 aa17.23■□□□□ 0.35
HMGB3-204ENST00000448905 LTBP1Q14766 1721 aa17.22■□□□□ 0.35
HMGB3-204ENST00000448905 IRS4O14654 1257 aaPredicted RBP17.22■□□□□ 0.35
HMGB3-204ENST00000448905 HSPA8P11142 646 aaKnown RBP17.22■□□□□ 0.35
HMGB3-204ENST00000448905 RPS8P62241 208 aaKnown RBP17.22■□□□□ 0.35
HMGB3-204ENST00000448905 GOLGA2Q08379 1002 aa17.22■□□□□ 0.35
HMGB3-204ENST00000448905 HHIPL1Q96JK4 782 aa17.22■□□□□ 0.35
HMGB3-204ENST00000448905 ZC3H12CQ9C0D7 883 aaKnown RBP17.22■□□□□ 0.35
HMGB3-204ENST00000448905 LAMB4A4D0S4 1761 aa17.21■□□□□ 0.35
HMGB3-204ENST00000448905 CA12O43570 354 aa17.21■□□□□ 0.35
HMGB3-204ENST00000448905 RTL5Q5HYW3 569 aaPredicted RBP17.21■□□□□ 0.35
HMGB3-204ENST00000448905 SAPCD2Q86UD0 394 aa17.21■□□□□ 0.35
HMGB3-204ENST00000448905 GLIS2Q9BZE0 524 aaPredicted RBP17.21■□□□□ 0.35
HMGB3-204ENST00000448905 ZNF408Q9H9D4 720 aa17.21■□□□□ 0.35
HMGB3-204ENST00000448905 RIMBP2O15034 1052 aa17.2■□□□□ 0.34
HMGB3-204ENST00000448905 RPS12P25398 132 aaKnown RBP17.2■□□□□ 0.34
HMGB3-204ENST00000448905 GNAI1P63096 354 aa17.2■□□□□ 0.34
HMGB3-204ENST00000448905 MICALL2Q8IY33 904 aa17.2■□□□□ 0.34
HMGB3-204ENST00000448905 CELF1Q92879 486 aaKnown RBP17.2■□□□□ 0.34
HMGB3-204ENST00000448905 ZNF428Q96B54 188 aa17.2■□□□□ 0.34
HMGB3-204ENST00000448905 HIRAP54198 1017 aaPredicted RBP17.19■□□□□ 0.34
HMGB3-204ENST00000448905 ZBTB38Q8NAP3 1195 aaPredicted RBP17.19■□□□□ 0.34
HMGB3-204ENST00000448905 MBIPQ9NS73 344 aa17.19■□□□□ 0.34
HMGB3-204ENST00000448905 KDM3BQ7LBC6 1761 aa17.19■□□□□ 0.34
HMGB3-204ENST00000448905 YDJCA8MPS7 323 aa17.18■□□□□ 0.34
HMGB3-204ENST00000448905 DDX58O95786 925 aaKnown RBP17.18■□□□□ 0.34
HMGB3-204ENST00000448905 GPSM2P81274 684 aa17.18■□□□□ 0.34
HMGB3-204ENST00000448905 USP48Q86UV5 1035 aa17.18■□□□□ 0.34
HMGB3-204ENST00000448905 DCPSQ96C86 337 aaKnown RBP17.18■□□□□ 0.34
HMGB3-204ENST00000448905 IFT57Q9NWB7 429 aa17.18■□□□□ 0.34
HMGB3-204ENST00000448905 ANKIB1Q9P2G1 1089 aa17.18■□□□□ 0.34
HMGB3-204ENST00000448905 ZBTB12Q9Y330 459 aaPredicted RBP17.18■□□□□ 0.34
HMGB3-204ENST00000448905 ELL2O00472 640 aaPredicted RBP17.17■□□□□ 0.34
HMGB3-204ENST00000448905 PSMD14O00487 310 aa17.17■□□□□ 0.34
HMGB3-204ENST00000448905 CCDC152Q4G0S7 254 aa17.17■□□□□ 0.34
HMGB3-204ENST00000448905 CCDC191Q8NCU4 936 aa17.17■□□□□ 0.34
HMGB3-204ENST00000448905 DBNDD1Q9H9R9 158 aa17.17■□□□□ 0.34
HMGB3-204ENST00000448905 POLLQ9UGP5 575 aa17.17■□□□□ 0.34
HMGB3-204ENST00000448905 APAF1O14727 1248 aa17.16■□□□□ 0.34
HMGB3-204ENST00000448905 AOC2O75106 756 aa17.16■□□□□ 0.34
HMGB3-204ENST00000448905 DOK7Q18PE1 504 aa17.16■□□□□ 0.34
HMGB3-204ENST00000448905 RBM26Q5T8P6 1007 aaKnown RBP17.16■□□□□ 0.34
HMGB3-204ENST00000448905 CCDC30Q5VVM6 783 aa17.16■□□□□ 0.34
HMGB3-204ENST00000448905 C2orf69Q8N8R5 385 aa17.16■□□□□ 0.34
HMGB3-204ENST00000448905 TBC1D16Q8TBP0 767 aa17.16■□□□□ 0.34
HMGB3-204ENST00000448905 TRPM4Q8TD43 1214 aa17.16■□□□□ 0.34
HMGB3-204ENST00000448905 ABHD8Q96I13 439 aa17.16■□□□□ 0.34
HMGB3-204ENST00000448905 ECE2O60344 883 aa17.15■□□□□ 0.34
HMGB3-204ENST00000448905 PDE8AO60658 829 aa17.15■□□□□ 0.34
HMGB3-204ENST00000448905 ZNF853P0CG23 659 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms