RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 ZNF831Q5JPB2 1677 aa15.43■□□□□ 0.06
COL28A1-204ENST00000444268 MRE11P49959 708 aa15.43■□□□□ 0.06
COL28A1-204ENST00000444268 UBE3BQ7Z3V4 1068 aa15.43■□□□□ 0.06
COL28A1-204ENST00000444268 EAF2Q96CJ1 260 aaPredicted RBP15.43■□□□□ 0.06
COL28A1-204ENST00000444268 LRRC4BQ9NT99 713 aa15.43■□□□□ 0.06
COL28A1-204ENST00000444268 CCDC87Q9NVE4 849 aa15.43■□□□□ 0.06
COL28A1-204ENST00000444268 KLHL40Q2TBA0 621 aa15.42■□□□□ 0.06
COL28A1-204ENST00000444268 SNRKQ9NRH2 765 aa15.42■□□□□ 0.06
COL28A1-204ENST00000444268 RREB1Q92766 1687 aa15.42■□□□□ 0.06
COL28A1-204ENST00000444268 TICAM2Q86XR7 235 aa15.41■□□□□ 0.06
COL28A1-204ENST00000444268 ZGPATQ8N5A5 531 aaKnown RBP15.41■□□□□ 0.06
COL28A1-204ENST00000444268 TM6SF1Q9BZW5 370 aa15.41■□□□□ 0.06
COL28A1-204ENST00000444268 GZF1Q9H116 711 aaPredicted RBP15.41■□□□□ 0.06
COL28A1-204ENST00000444268 SIL1Q9H173 461 aa15.41■□□□□ 0.06
COL28A1-204ENST00000444268 IL25Q9H293 177 aa15.41■□□□□ 0.06
COL28A1-204ENST00000444268 ZBTB3Q9H5J0 574 aa15.41■□□□□ 0.06
COL28A1-204ENST00000444268 CWC25Q9NXE8 425 aaPredicted RBP15.41■□□□□ 0.06
COL28A1-204ENST00000444268 SNX14Q9Y5W7 946 aa15.41■□□□□ 0.06
COL28A1-204ENST00000444268 TNS1Q9HBL0 1735 aaKnown RBP15.41■□□□□ 0.06
COL28A1-204ENST00000444268 ZKSCAN1P17029 563 aaPredicted RBP15.41■□□□□ 0.06
COL28A1-204ENST00000444268 RFX5P48382 616 aaPredicted RBP15.41■□□□□ 0.06
COL28A1-204ENST00000444268 CCDC191Q8NCU4 936 aa15.41■□□□□ 0.06
COL28A1-204ENST00000444268 ARXQ96QS3 562 aa15.41■□□□□ 0.06
COL28A1-204ENST00000444268 TAF1LQ8IZX4 1826 aa15.41■□□□□ 0.06
COL28A1-204ENST00000444268 H7C1W4 665 aa15.4■□□□□ 0.06
COL28A1-204ENST00000444268 APBA3O96018 575 aa15.4■□□□□ 0.06
COL28A1-204ENST00000444268 CASP7P55210 303 aa15.4■□□□□ 0.06
COL28A1-204ENST00000444268 PTPN12Q05209 780 aaKnown RBP15.4■□□□□ 0.06
COL28A1-204ENST00000444268 EPHA10Q5JZY3 1008 aa15.4■□□□□ 0.06
COL28A1-204ENST00000444268 PROM2Q8N271 834 aa15.4■□□□□ 0.06
COL28A1-204ENST00000444268 KCNB2Q92953 911 aa15.4■□□□□ 0.06
COL28A1-204ENST00000444268 UPF3BQ9BZI7 483 aaKnown RBP15.4■□□□□ 0.06
COL28A1-204ENST00000444268 ATP5JP18859 108 aa15.39■□□□□ 0.05
COL28A1-204ENST00000444268 TNNI3KQ59H18 835 aa15.39■□□□□ 0.05
COL28A1-204ENST00000444268 AMIGO3Q86WK7 504 aa15.39■□□□□ 0.05
COL28A1-204ENST00000444268 FSD1Q9BTV5 496 aa15.39■□□□□ 0.05
COL28A1-204ENST00000444268 CCDC8Q9H0W5 538 aaPredicted RBP15.39■□□□□ 0.05
COL28A1-204ENST00000444268 DDX49Q9Y6V7 483 aaKnown RBP15.39■□□□□ 0.05
COL28A1-204ENST00000444268 FPGT-TNNI3KV9GXZ4 949 aa15.39■□□□□ 0.05
COL28A1-204ENST00000444268 CCDC171Q6TFL3 1326 aa15.39■□□□□ 0.05
COL28A1-204ENST00000444268 ATP5J2-PTCD1G3V325 749 aa15.39■□□□□ 0.05
COL28A1-204ENST00000444268 RNF20Q5VTR2 975 aa15.39■□□□□ 0.05
COL28A1-204ENST00000444268 MCTP1Q6DN14 999 aa15.39■□□□□ 0.05
COL28A1-204ENST00000444268 LIMCH1Q9UPQ0 1083 aa15.39■□□□□ 0.05
COL28A1-204ENST00000444268 TBC1D2BQ9UPU7 963 aa15.39■□□□□ 0.05
COL28A1-204ENST00000444268 IL6STP40189 918 aaPredicted RBP15.38■□□□□ 0.05
COL28A1-204ENST00000444268 EIF5P55010 431 aaKnown RBP15.38■□□□□ 0.05
COL28A1-204ENST00000444268 GPR108Q9NPR9 543 aa15.38■□□□□ 0.05
COL28A1-204ENST00000444268 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.38■□□□□ 0.05
COL28A1-204ENST00000444268 CNTNAP4Q9C0A0 1308 aa15.37■□□□□ 0.05
COL28A1-204ENST00000444268 WDR33Q9C0J8 1336 aaKnown RBP15.37■□□□□ 0.05
COL28A1-204ENST00000444268 TXNRD1Q16881 649 aa15.37■□□□□ 0.05
COL28A1-204ENST00000444268 VPS53Q5VIR6 699 aa15.37■□□□□ 0.05
COL28A1-204ENST00000444268 ZSCAN31Q96LW9 406 aaPredicted RBP15.37■□□□□ 0.05
COL28A1-204ENST00000444268 TTC14Q96N46 770 aa15.37■□□□□ 0.05
COL28A1-204ENST00000444268 BRPF3Q9ULD4 1205 aa15.37■□□□□ 0.05
COL28A1-204ENST00000444268 C4BP0C0L5 1744 aa15.37■□□□□ 0.05
COL28A1-204ENST00000444268 BRD1O95696 1058 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 PDIA4P13667 645 aaKnown RBP15.36■□□□□ 0.05
COL28A1-204ENST00000444268 PSMA5P28066 241 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 KCNJ4P48050 445 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 HLFQ16534 295 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 DZIP3Q86Y13 1208 aaKnown RBP15.36■□□□□ 0.05
COL28A1-204ENST00000444268 SH2B1Q9NRF2 756 aaPredicted RBP15.36■□□□□ 0.05
COL28A1-204ENST00000444268 TLR7Q9NYK1 1049 aaKnown RBP15.36■□□□□ 0.05
COL28A1-204ENST00000444268 HMG20BQ9P0W2 317 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 CYP46A1Q9Y6A2 500 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 MED23Q9ULK4 1368 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 GNPATO15228 680 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 PKP1Q13835 747 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 NECTIN1Q15223 517 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 LMBR1LQ6UX01 489 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 KIF6Q6ZMV9 814 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 KLHDC4Q8TBB5 520 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 MAP4K1Q92918 833 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 BOLA2Q9H3K6 86 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 FBXO3Q9UK99 471 aa15.36■□□□□ 0.05
COL28A1-204ENST00000444268 MAP3K15Q6ZN16 1313 aa15.35■□□□□ 0.05
COL28A1-204ENST00000444268 SPEF2Q9C093 1822 aa15.35■□□□□ 0.05
COL28A1-204ENST00000444268 CIAO1O76071 339 aa15.35■□□□□ 0.05
COL28A1-204ENST00000444268 CASTP20810 708 aaKnown RBP15.35■□□□□ 0.05
COL28A1-204ENST00000444268 IL15P40933 162 aaPredicted RBP15.35■□□□□ 0.05
COL28A1-204ENST00000444268 FOXO4P98177 505 aa15.35■□□□□ 0.05
COL28A1-204ENST00000444268 TFCP2Q12800 502 aa15.35■□□□□ 0.05
COL28A1-204ENST00000444268 TRIM28Q13263 835 aaKnown RBP15.35■□□□□ 0.05
COL28A1-204ENST00000444268 NMIQ13287 307 aaPredicted RBP15.35■□□□□ 0.05
COL28A1-204ENST00000444268 JARID2Q92833 1246 aaPredicted RBP15.35■□□□□ 0.05
COL28A1-204ENST00000444268 GRPEL1Q9HAV7 217 aa15.35■□□□□ 0.05
COL28A1-204ENST00000444268 ZSWIM6Q9HCJ5 1215 aa15.35■□□□□ 0.05
COL28A1-204ENST00000444268 DBNLQ9UJU6 430 aaKnown RBP15.35■□□□□ 0.05
COL28A1-204ENST00000444268 ZDHHC9Q9Y397 364 aa15.35■□□□□ 0.05
COL28A1-204ENST00000444268 PLSCR1O15162 318 aa15.34■□□□□ 0.05
COL28A1-204ENST00000444268 MBD3O95983 291 aa15.34■□□□□ 0.05
COL28A1-204ENST00000444268 XRCC6P12956 609 aaKnown RBP eCLIP15.34■□□□□ 0.05
COL28A1-204ENST00000444268 AK2P54819 239 aa15.34■□□□□ 0.05
COL28A1-204ENST00000444268 PRPF40BQ6NWY9 871 aaKnown RBP15.34■□□□□ 0.05
COL28A1-204ENST00000444268 RASEFQ8IZ41 740 aa15.34■□□□□ 0.05
COL28A1-204ENST00000444268 LMBRD1Q9NUN5 540 aa15.34■□□□□ 0.05
COL28A1-204ENST00000444268 RBM8AQ9Y5S9 174 aaKnown RBP15.34■□□□□ 0.05
COL28A1-204ENST00000444268 PTH1RQ03431 593 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms