RNA–Protein interactions for RNA: ENST00000440514.1

CPSF4-205, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-205ENST00000440514 SRCIN1Q9C0H9 1055 aa22.89■■□□□ 1.25
CPSF4-205ENST00000440514 CCDC88AQ3V6T2 1871 aa22.89■■□□□ 1.25
CPSF4-205ENST00000440514 HSP90B1P14625 803 aaKnown RBP22.88■■□□□ 1.25
CPSF4-205ENST00000440514 GRAPQ13588 217 aa22.88■■□□□ 1.25
CPSF4-205ENST00000440514 GRAPLQ8TC17 118 aaPredicted RBP22.88■■□□□ 1.25
CPSF4-205ENST00000440514 CCDC85AQ96PX6 553 aaPredicted RBP22.88■■□□□ 1.25
CPSF4-205ENST00000440514 TAOK3Q9H2K8 898 aa22.88■■□□□ 1.25
CPSF4-205ENST00000440514 RNF181Q9P0P0 153 aa22.88■■□□□ 1.25
CPSF4-205ENST00000440514 NOB1Q9ULX3 412 aaKnown RBP22.88■■□□□ 1.25
CPSF4-205ENST00000440514 ALDH1L1O75891 902 aa22.87■■□□□ 1.25
CPSF4-205ENST00000440514 CTSWP56202 376 aa22.87■■□□□ 1.25
CPSF4-205ENST00000440514 CELF1Q92879 486 aaKnown RBP22.87■■□□□ 1.25
CPSF4-205ENST00000440514 KIF16BQ96L93 1317 aa22.86■■□□□ 1.25
CPSF4-205ENST00000440514 LTBP3Q9NS15 1303 aa22.86■■□□□ 1.25
CPSF4-205ENST00000440514 BCAR3O75815 825 aa22.86■■□□□ 1.25
CPSF4-205ENST00000440514 BRPF1P55201 1214 aaPredicted RBP22.86■■□□□ 1.25
CPSF4-205ENST00000440514 SEC31BQ9NQW1 1179 aa22.86■■□□□ 1.25
CPSF4-205ENST00000440514 SPEF2Q9C093 1822 aa22.85■■□□□ 1.25
CPSF4-205ENST00000440514 CCDC152Q4G0S7 254 aa22.85■■□□□ 1.25
CPSF4-205ENST00000440514 GRM8O00222 908 aa22.84■■□□□ 1.25
CPSF4-205ENST00000440514 LMNB1P20700 586 aa22.84■■□□□ 1.25
CPSF4-205ENST00000440514 ATP6V0A2Q9Y487 856 aa22.84■■□□□ 1.25
CPSF4-205ENST00000440514 DICER1Q9UPY3 1922 aaKnown RBP22.83■■□□□ 1.25
CPSF4-205ENST00000440514 BBOX1O75936 387 aa22.83■■□□□ 1.25
CPSF4-205ENST00000440514 FKBP4Q02790 459 aaKnown RBP eCLIP22.83■■□□□ 1.25
CPSF4-205ENST00000440514 RTKN2Q8IZC4 609 aa22.83■■□□□ 1.25
CPSF4-205ENST00000440514 ZNF784Q8NCA9 323 aaPredicted RBP22.83■■□□□ 1.25
CPSF4-205ENST00000440514 TTLL11Q8NHH1 800 aa22.83■■□□□ 1.25
CPSF4-205ENST00000440514 CC2D2BQ6DHV5 1058 aa22.82■■□□□ 1.24
CPSF4-205ENST00000440514 PLA2G12BQ9BX93 195 aa22.82■■□□□ 1.24
CPSF4-205ENST00000440514 API5Q9BZZ5 524 aaKnown RBP22.82■■□□□ 1.24
CPSF4-205ENST00000440514 GREM2Q9H772 168 aa22.82■■□□□ 1.24
CPSF4-205ENST00000440514 C9orf78Q9NZ63 289 aaPredicted RBP22.82■■□□□ 1.24
CPSF4-205ENST00000440514 DUOX1Q9NRD9 1551 aa22.81■■□□□ 1.24
CPSF4-205ENST00000440514 ZNF277Q9NRM2 450 aaPredicted RBP22.81■■□□□ 1.24
CPSF4-205ENST00000440514 TNNQ9UQP3 1299 aa22.81■■□□□ 1.24
CPSF4-205ENST00000440514 RTL9Q8NET4 1388 aa22.8■■□□□ 1.24
CPSF4-205ENST00000440514 NBPF7P0C2Y1 421 aaPredicted RBP22.8■■□□□ 1.24
CPSF4-205ENST00000440514 FAM161AQ3B820 660 aa22.8■■□□□ 1.24
CPSF4-205ENST00000440514 SP8Q8IXZ3 490 aa22.8■■□□□ 1.24
CPSF4-205ENST00000440514 ZNF526Q8TF50 670 aaPredicted RBP22.8■■□□□ 1.24
CPSF4-205ENST00000440514 FRAT1Q92837 279 aaPredicted RBP22.8■■□□□ 1.24
CPSF4-205ENST00000440514 YTHDC1Q96MU7 727 aaKnown RBP22.8■■□□□ 1.24
CPSF4-205ENST00000440514 LTBP1Q14766 1721 aa22.79■■□□□ 1.24
CPSF4-205ENST00000440514 FOXO4P98177 505 aa22.79■■□□□ 1.24
CPSF4-205ENST00000440514 EPHA10Q5JZY3 1008 aa22.79■■□□□ 1.24
CPSF4-205ENST00000440514 PSMD1Q99460 953 aa22.79■■□□□ 1.24
CPSF4-205ENST00000440514 TMX4Q9H1E5 349 aaPredicted RBP22.79■■□□□ 1.24
CPSF4-205ENST00000440514 COL4A5P29400 1685 aa22.78■■□□□ 1.24
CPSF4-205ENST00000440514 RPS8P62241 208 aaKnown RBP22.78■■□□□ 1.24
CPSF4-205ENST00000440514 TMC4Q7Z404 712 aa22.78■■□□□ 1.24
CPSF4-205ENST00000440514 SUCLG2Q96I99 432 aa22.78■■□□□ 1.24
CPSF4-205ENST00000440514 UTYO14607 1347 aa22.78■■□□□ 1.24
CPSF4-205ENST00000440514 TRIM27P14373 513 aa22.77■■□□□ 1.24
CPSF4-205ENST00000440514 CCT4P50991 539 aaKnown RBP22.77■■□□□ 1.24
CPSF4-205ENST00000440514 ARHGAP45Q92619 1136 aa22.77■■□□□ 1.24
CPSF4-205ENST00000440514 CSF1RP07333 972 aa22.76■■□□□ 1.23
CPSF4-205ENST00000440514 IARSP41252 1262 aaKnown RBP22.76■■□□□ 1.23
CPSF4-205ENST00000440514 GRIPAP1Q4V328 841 aa22.76■■□□□ 1.23
CPSF4-205ENST00000440514 DPP8Q6V1X1 898 aaPredicted RBP22.76■■□□□ 1.23
CPSF4-205ENST00000440514 ANKRD18AQ8IVF6 992 aa22.76■■□□□ 1.23
CPSF4-205ENST00000440514 CDC5LQ99459 802 aaKnown RBP22.76■■□□□ 1.23
CPSF4-205ENST00000440514 IPO8O15397 1037 aaKnown RBP22.75■■□□□ 1.23
CPSF4-205ENST00000440514 ITGA6P23229 1130 aa22.75■■□□□ 1.23
CPSF4-205ENST00000440514 LMBR1LQ6UX01 489 aa22.75■■□□□ 1.23
CPSF4-205ENST00000440514 ATF7IPQ6VMQ6 1270 aa22.75■■□□□ 1.23
CPSF4-205ENST00000440514 MPNDQ8N594 471 aa22.75■■□□□ 1.23
CPSF4-205ENST00000440514 KAZALD1Q96I82 304 aa22.75■■□□□ 1.23
CPSF4-205ENST00000440514 USP44Q9H0E7 712 aa22.75■■□□□ 1.23
CPSF4-205ENST00000440514 CHMP3Q9Y3E7 222 aa22.75■■□□□ 1.23
CPSF4-205ENST00000440514 ZC3H4Q9UPT8 1303 aaKnown RBP22.75■■□□□ 1.23
CPSF4-205ENST00000440514 GPSM2P81274 684 aa22.74■■□□□ 1.23
CPSF4-205ENST00000440514 CLUAP1Q96AJ1 413 aa22.74■■□□□ 1.23
CPSF4-205ENST00000440514 ZKSCAN2Q63HK3 967 aa22.73■■□□□ 1.23
CPSF4-205ENST00000440514 RTFDC1Q9BY42 306 aaPredicted RBP22.72■■□□□ 1.23
CPSF4-205ENST00000440514 BICC1Q9H694 974 aaKnown RBP22.72■■□□□ 1.23
CPSF4-205ENST00000440514 NSFL1CQ9UNZ2 370 aaKnown RBP22.72■■□□□ 1.23
CPSF4-205ENST00000440514 A0A1B0GUL6 1792 aa22.71■■□□□ 1.23
CPSF4-205ENST00000440514 PPIP5K2O43314 1243 aa22.71■■□□□ 1.23
CPSF4-205ENST00000440514 AOC3Q16853 763 aa22.71■■□□□ 1.23
CPSF4-205ENST00000440514 INTS3Q68E01 1043 aaKnown RBP22.71■■□□□ 1.23
CPSF4-205ENST00000440514 GPBP1L1Q9HC44 474 aaPredicted RBP22.71■■□□□ 1.23
CPSF4-205ENST00000440514 ANKRD18BA2A2Z9 1011 aa22.7■■□□□ 1.22
CPSF4-205ENST00000440514 IGHMBP2P38935 993 aaKnown RBP22.7■■□□□ 1.22
CPSF4-205ENST00000440514 LARGE2Q8N3Y3 721 aa22.7■■□□□ 1.22
CPSF4-205ENST00000440514 ANKRD44Q8N8A2 993 aa22.7■■□□□ 1.22
CPSF4-205ENST00000440514 SUPT20HQ8NEM7 779 aa22.7■■□□□ 1.22
CPSF4-205ENST00000440514 ZNF541Q9H0D2 1346 aa22.69■■□□□ 1.22
CPSF4-205ENST00000440514 IFIT5Q13325 482 aaKnown RBP22.69■■□□□ 1.22
CPSF4-205ENST00000440514 GPR101Q96P66 508 aaPredicted RBP22.69■■□□□ 1.22
CPSF4-205ENST00000440514 MEIS3Q99687 375 aa22.69■■□□□ 1.22
CPSF4-205ENST00000440514 BSDC1Q9NW68 430 aaPredicted RBP22.69■■□□□ 1.22
CPSF4-205ENST00000440514 UBTFL1P0CB47 393 aaPredicted RBP22.68■■□□□ 1.22
CPSF4-205ENST00000440514 RABL6Q3YEC7 729 aaPredicted RBP22.68■■□□□ 1.22
CPSF4-205ENST00000440514 ANKIB1Q9P2G1 1089 aa22.68■■□□□ 1.22
CPSF4-205ENST00000440514 POLLQ9UGP5 575 aa22.68■■□□□ 1.22
CPSF4-205ENST00000440514 KDM2BQ8NHM5 1336 aa22.67■■□□□ 1.22
CPSF4-205ENST00000440514 CCDC57Q2TAC2 916 aa22.67■■□□□ 1.22
CPSF4-205ENST00000440514 TMEM57Q8N5G2 664 aa22.67■■□□□ 1.22
CPSF4-205ENST00000440514 TBC1D16Q8TBP0 767 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 155.1 ms