RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 KIF3CO14782 793 aa13.31□□□□□ -0.28
MCF2L-216ENST00000439475 TOMM70O94826 608 aa13.31□□□□□ -0.28
MCF2L-216ENST00000439475 IGKV5-2P06315 115 aa13.31□□□□□ -0.28
MCF2L-216ENST00000439475 VEGFAP15692 232 aaPredicted RBP13.31□□□□□ -0.28
MCF2L-216ENST00000439475 OLFM4Q6UX06 510 aa13.31□□□□□ -0.28
MCF2L-216ENST00000439475 MPNDQ8N594 471 aa13.31□□□□□ -0.28
MCF2L-216ENST00000439475 ZNF277Q9NRM2 450 aaPredicted RBP13.31□□□□□ -0.28
MCF2L-216ENST00000439475 CT47B1P0C2W7 299 aaPredicted RBP13.3□□□□□ -0.28
MCF2L-216ENST00000439475 EIF6P56537 245 aaKnown RBP13.3□□□□□ -0.28
MCF2L-216ENST00000439475 RPS8P62241 208 aaKnown RBP13.3□□□□□ -0.28
MCF2L-216ENST00000439475 CWF19L2Q2TBE0 894 aaKnown RBP13.3□□□□□ -0.28
MCF2L-216ENST00000439475 DPP8Q6V1X1 898 aaPredicted RBP13.3□□□□□ -0.28
MCF2L-216ENST00000439475 LARGE2Q8N3Y3 721 aa13.3□□□□□ -0.28
MCF2L-216ENST00000439475 NMRK2Q9NPI5 230 aa13.3□□□□□ -0.28
MCF2L-216ENST00000439475 H7C1W4 665 aa13.29□□□□□ -0.28
MCF2L-216ENST00000439475 GCKRQ14397 625 aa13.29□□□□□ -0.28
MCF2L-216ENST00000439475 ALDH1L2Q3SY69 923 aa13.29□□□□□ -0.28
MCF2L-216ENST00000439475 JARID2Q92833 1246 aaPredicted RBP13.29□□□□□ -0.28
MCF2L-216ENST00000439475 CDCA7LQ96GN5 454 aa13.29□□□□□ -0.28
MCF2L-216ENST00000439475 LAMB2P55268 1798 aa13.29□□□□□ -0.28
MCF2L-216ENST00000439475 UTRNP46939 3433 aa13.29□□□□□ -0.28
MCF2L-216ENST00000439475 PPIP5K2O43314 1243 aa13.28□□□□□ -0.28
MCF2L-216ENST00000439475 SLC4A10Q6U841 1118 aa13.28□□□□□ -0.28
MCF2L-216ENST00000439475 ANKRD18AQ8IVF6 992 aa13.28□□□□□ -0.28
MCF2L-216ENST00000439475 NIM1KQ8IY84 436 aa13.28□□□□□ -0.28
MCF2L-216ENST00000439475 TRMT2AQ8IZ69 625 aaKnown RBP13.28□□□□□ -0.28
MCF2L-216ENST00000439475 MRPL50Q8N5N7 158 aaKnown RBP13.28□□□□□ -0.28
MCF2L-216ENST00000439475 CELF1Q92879 486 aaKnown RBP13.28□□□□□ -0.28
MCF2L-216ENST00000439475 CDC5LQ99459 802 aaKnown RBP13.28□□□□□ -0.28
MCF2L-216ENST00000439475 NSFL1CQ9UNZ2 370 aaKnown RBP13.28□□□□□ -0.28
MCF2L-216ENST00000439475 DDX60Q8IY21 1712 aaKnown RBP13.27□□□□□ -0.28
MCF2L-216ENST00000439475 F6X3S4 739 aa13.27□□□□□ -0.29
MCF2L-216ENST00000439475 DDNO94850 711 aaPredicted RBP13.27□□□□□ -0.29
MCF2L-216ENST00000439475 CTSWP56202 376 aa13.27□□□□□ -0.29
MCF2L-216ENST00000439475 UBE3BQ7Z3V4 1068 aa13.27□□□□□ -0.29
MCF2L-216ENST00000439475 RBM46Q8TBY0 533 aaKnown RBP13.27□□□□□ -0.29
MCF2L-216ENST00000439475 EYA3Q99504 573 aa13.27□□□□□ -0.29
MCF2L-216ENST00000439475 RTFDC1Q9BY42 306 aaPredicted RBP13.27□□□□□ -0.29
MCF2L-216ENST00000439475 SRCIN1Q9C0H9 1055 aa13.27□□□□□ -0.29
MCF2L-216ENST00000439475 PTPRCP08575 1304 aa13.27□□□□□ -0.29
MCF2L-216ENST00000439475 IQCA1LA6NCM1 817 aa13.26□□□□□ -0.29
MCF2L-216ENST00000439475 FZD9O00144 591 aa13.26□□□□□ -0.29
MCF2L-216ENST00000439475 ALDH1L1O75891 902 aa13.26□□□□□ -0.29
MCF2L-216ENST00000439475 HNRNPUQ00839 825 aaKnown RBP eCLIP13.26□□□□□ -0.29
MCF2L-216ENST00000439475 BEND3Q5T5X7 828 aa13.26□□□□□ -0.29
MCF2L-216ENST00000439475 TTLL11Q8NHH1 800 aa13.26□□□□□ -0.29
MCF2L-216ENST00000439475 CCDC85AQ96PX6 553 aaPredicted RBP13.26□□□□□ -0.29
MCF2L-216ENST00000439475 PLA2G12BQ9BX93 195 aa13.26□□□□□ -0.29
MCF2L-216ENST00000439475 C9orf78Q9NZ63 289 aaPredicted RBP13.26□□□□□ -0.29
MCF2L-216ENST00000439475 TIAM2Q8IVF5 1701 aa13.25□□□□□ -0.29
MCF2L-216ENST00000439475 C6orf229H3BNL8 230 aa13.25□□□□□ -0.29
MCF2L-216ENST00000439475 IGHMBP2P38935 993 aaKnown RBP13.25□□□□□ -0.29
MCF2L-216ENST00000439475 FSTL1Q12841 308 aa13.25□□□□□ -0.29
MCF2L-216ENST00000439475 SSH1Q8WYL5 1049 aa13.25□□□□□ -0.29
MCF2L-216ENST00000439475 SEC31BQ9NQW1 1179 aa13.25□□□□□ -0.29
MCF2L-216ENST00000439475 SMC4Q9NTJ3 1288 aa13.25□□□□□ -0.29
MCF2L-216ENST00000439475 SNED1Q8TER0 1413 aa13.24□□□□□ -0.29
MCF2L-216ENST00000439475 G3V3G9 751 aa13.24□□□□□ -0.29
MCF2L-216ENST00000439475 AOC3Q16853 763 aa13.24□□□□□ -0.29
MCF2L-216ENST00000439475 WASHC4Q2M389 1173 aa13.24□□□□□ -0.29
MCF2L-216ENST00000439475 DCAF8Q5TAQ9 597 aa13.24□□□□□ -0.29
MCF2L-216ENST00000439475 GPC2Q8N158 579 aa13.24□□□□□ -0.29
MCF2L-216ENST00000439475 SMC1BQ8NDV3 1235 aa13.24□□□□□ -0.29
MCF2L-216ENST00000439475 ZC3H12CQ9C0D7 883 aaKnown RBP13.24□□□□□ -0.29
MCF2L-216ENST00000439475 ANKIB1Q9P2G1 1089 aa13.24□□□□□ -0.29
MCF2L-216ENST00000439475 ZNRF3Q9ULT6 936 aa13.24□□□□□ -0.29
MCF2L-216ENST00000439475 TAF1P21675 1872 aa13.24□□□□□ -0.29
MCF2L-216ENST00000439475 ANKRD18BA2A2Z9 1011 aa13.23□□□□□ -0.29
MCF2L-216ENST00000439475 GRM8O00222 908 aa13.23□□□□□ -0.29
MCF2L-216ENST00000439475 CSF1RP07333 972 aa13.23□□□□□ -0.29
MCF2L-216ENST00000439475 KIAA2012Q0VF49 1180 aa13.23□□□□□ -0.29
MCF2L-216ENST00000439475 MPHOSPH8Q99549 860 aa13.23□□□□□ -0.29
MCF2L-216ENST00000439475 GREM2Q9H772 168 aa13.23□□□□□ -0.29
MCF2L-216ENST00000439475 GJA3Q9Y6H8 435 aa13.23□□□□□ -0.29
MCF2L-216ENST00000439475 GOLGB1Q14789 3259 aaKnown RBP13.23□□□□□ -0.29
MCF2L-216ENST00000439475 MYH3P11055 1940 aa13.23□□□□□ -0.29
MCF2L-216ENST00000439475 RTL9Q8NET4 1388 aa13.22□□□□□ -0.29
MCF2L-216ENST00000439475 HSPA6P17066 643 aa13.22□□□□□ -0.29
MCF2L-216ENST00000439475 ITGA6P23229 1130 aa13.22□□□□□ -0.29
MCF2L-216ENST00000439475 ATP2B4P23634 1241 aa13.22□□□□□ -0.29
MCF2L-216ENST00000439475 LMOD1P29536 600 aaPredicted RBP13.22□□□□□ -0.29
MCF2L-216ENST00000439475 CASP7P55210 303 aa13.22□□□□□ -0.29
MCF2L-216ENST00000439475 GPSM2P81274 684 aa13.22□□□□□ -0.29
MCF2L-216ENST00000439475 TNIP1Q15025 636 aa13.22□□□□□ -0.29
MCF2L-216ENST00000439475 L3MBTL3Q96JM7 780 aaPredicted RBP13.22□□□□□ -0.29
MCF2L-216ENST00000439475 BCL2L13Q9BXK5 485 aa13.22□□□□□ -0.29
MCF2L-216ENST00000439475 BSDC1Q9NW68 430 aaPredicted RBP13.22□□□□□ -0.29
MCF2L-216ENST00000439475 PODXL2Q9NZ53 605 aa13.22□□□□□ -0.29
MCF2L-216ENST00000439475 HACL1Q9UJ83 578 aa13.22□□□□□ -0.29
MCF2L-216ENST00000439475 GGA1Q9UJY5 639 aa13.22□□□□□ -0.29
MCF2L-216ENST00000439475 CHMP3Q9Y3E7 222 aa13.22□□□□□ -0.29
MCF2L-216ENST00000439475 WDR90Q96KV7 1748 aa13.22□□□□□ -0.29
MCF2L-216ENST00000439475 ZNF541Q9H0D2 1346 aa13.21□□□□□ -0.29
MCF2L-216ENST00000439475 POTECB2RU33 542 aa13.21□□□□□ -0.29
MCF2L-216ENST00000439475 RIMBP2O15034 1052 aa13.21□□□□□ -0.29
MCF2L-216ENST00000439475 IFIT5Q13325 482 aaKnown RBP13.21□□□□□ -0.29
MCF2L-216ENST00000439475 CIAPIN1Q6FI81 312 aa13.21□□□□□ -0.29
MCF2L-216ENST00000439475 PNMA8AQ86V59 439 aaPredicted RBP13.21□□□□□ -0.29
MCF2L-216ENST00000439475 API5Q9BZZ5 524 aaKnown RBP13.21□□□□□ -0.29
MCF2L-216ENST00000439475 XDHP47989 1333 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms