RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 TAOK3Q9H2K8 898 aa23.66■■□□□ 1.38
SHH-202ENST00000430104 PRELPP51888 382 aa23.65■■□□□ 1.38
SHH-202ENST00000430104 GRAPQ13588 217 aa23.65■■□□□ 1.38
SHH-202ENST00000430104 GRAPLQ8TC17 118 aaPredicted RBP23.65■■□□□ 1.38
SHH-202ENST00000430104 ALDH1L1O75891 902 aa23.64■■□□□ 1.37
SHH-202ENST00000430104 BBOX1O75936 387 aa23.64■■□□□ 1.37
SHH-202ENST00000430104 LMNB1P20700 586 aa23.64■■□□□ 1.37
SHH-202ENST00000430104 CCDC152Q4G0S7 254 aa23.64■■□□□ 1.37
SHH-202ENST00000430104 RTKN2Q8IZC4 609 aa23.64■■□□□ 1.37
SHH-202ENST00000430104 ZNF526Q8TF50 670 aaPredicted RBP23.64■■□□□ 1.37
SHH-202ENST00000430104 TMX4Q9H1E5 349 aaPredicted RBP23.64■■□□□ 1.37
SHH-202ENST00000430104 ZNF784Q8NCA9 323 aaPredicted RBP23.63■■□□□ 1.37
SHH-202ENST00000430104 CELF1Q92879 486 aaKnown RBP23.63■■□□□ 1.37
SHH-202ENST00000430104 SEC31BQ9NQW1 1179 aa23.63■■□□□ 1.37
SHH-202ENST00000430104 C9orf78Q9NZ63 289 aaPredicted RBP23.63■■□□□ 1.37
SHH-202ENST00000430104 BCAR3O75815 825 aa23.62■■□□□ 1.37
SHH-202ENST00000430104 CASP7P55210 303 aa23.62■■□□□ 1.37
SHH-202ENST00000430104 CTSWP56202 376 aa23.62■■□□□ 1.37
SHH-202ENST00000430104 ATP6V0A2Q9Y487 856 aa23.62■■□□□ 1.37
SHH-202ENST00000430104 COL4A1P02462 1669 aa23.62■■□□□ 1.37
SHH-202ENST00000430104 GRM8O00222 908 aa23.61■■□□□ 1.37
SHH-202ENST00000430104 FKBP4Q02790 459 aaKnown RBP eCLIP23.61■■□□□ 1.37
SHH-202ENST00000430104 CC2D2BQ6DHV5 1058 aa23.61■■□□□ 1.37
SHH-202ENST00000430104 TTLL11Q8NHH1 800 aa23.61■■□□□ 1.37
SHH-202ENST00000430104 LTBP3Q9NS15 1303 aa23.6■■□□□ 1.37
SHH-202ENST00000430104 FRAT1Q92837 279 aaPredicted RBP23.6■■□□□ 1.37
SHH-202ENST00000430104 ZNF277Q9NRM2 450 aaPredicted RBP23.6■■□□□ 1.37
SHH-202ENST00000430104 DICER1Q9UPY3 1922 aaKnown RBP23.6■■□□□ 1.37
SHH-202ENST00000430104 TIAM2Q8IVF5 1701 aa23.59■■□□□ 1.37
SHH-202ENST00000430104 SPEF2Q9C093 1822 aa23.59■■□□□ 1.37
SHH-202ENST00000430104 BRPF1P55201 1214 aaPredicted RBP23.59■■□□□ 1.37
SHH-202ENST00000430104 RPS8P62241 208 aaKnown RBP23.59■■□□□ 1.37
SHH-202ENST00000430104 SP8Q8IXZ3 490 aa23.59■■□□□ 1.37
SHH-202ENST00000430104 YTHDC1Q96MU7 727 aaKnown RBP23.59■■□□□ 1.37
SHH-202ENST00000430104 API5Q9BZZ5 524 aaKnown RBP23.59■■□□□ 1.37
SHH-202ENST00000430104 KIF16BQ96L93 1317 aa23.59■■□□□ 1.37
SHH-202ENST00000430104 GREM2Q9H772 168 aa23.58■■□□□ 1.37
SHH-202ENST00000430104 PLA2G12BQ9BX93 195 aa23.57■■□□□ 1.36
SHH-202ENST00000430104 TMC4Q7Z404 712 aa23.56■■□□□ 1.36
SHH-202ENST00000430104 ANKRD18AQ8IVF6 992 aa23.56■■□□□ 1.36
SHH-202ENST00000430104 MPNDQ8N594 471 aa23.56■■□□□ 1.36
SHH-202ENST00000430104 CHMP3Q9Y3E7 222 aa23.56■■□□□ 1.36
SHH-202ENST00000430104 SNED1Q8TER0 1413 aa23.56■■□□□ 1.36
SHH-202ENST00000430104 NBPF7P0C2Y1 421 aaPredicted RBP23.55■■□□□ 1.36
SHH-202ENST00000430104 FOXO4P98177 505 aa23.55■■□□□ 1.36
SHH-202ENST00000430104 GRIPAP1Q4V328 841 aa23.55■■□□□ 1.36
SHH-202ENST00000430104 DPP8Q6V1X1 898 aaPredicted RBP23.55■■□□□ 1.36
SHH-202ENST00000430104 PSMD1Q99460 953 aa23.55■■□□□ 1.36
SHH-202ENST00000430104 IPO8O15397 1037 aaKnown RBP23.54■■□□□ 1.36
SHH-202ENST00000430104 IARSP41252 1262 aaKnown RBP23.54■■□□□ 1.36
SHH-202ENST00000430104 FAM161AQ3B820 660 aa23.54■■□□□ 1.36
SHH-202ENST00000430104 EPHA10Q5JZY3 1008 aa23.54■■□□□ 1.36
SHH-202ENST00000430104 SUCLG2Q96I99 432 aa23.54■■□□□ 1.36
SHH-202ENST00000430104 CDC5LQ99459 802 aaKnown RBP23.54■■□□□ 1.36
SHH-202ENST00000430104 TNNQ9UQP3 1299 aa23.54■■□□□ 1.36
SHH-202ENST00000430104 LRRC37AA6NMS7 1700 aa23.53■■□□□ 1.36
SHH-202ENST00000430104 CSF1RP07333 972 aa23.53■■□□□ 1.36
SHH-202ENST00000430104 CCT4P50991 539 aaKnown RBP23.53■■□□□ 1.36
SHH-202ENST00000430104 ARHGAP45Q92619 1136 aa23.53■■□□□ 1.36
SHH-202ENST00000430104 GPBP1L1Q9HC44 474 aaPredicted RBP23.53■■□□□ 1.36
SHH-202ENST00000430104 NSFL1CQ9UNZ2 370 aaKnown RBP23.53■■□□□ 1.36
SHH-202ENST00000430104 ITGA6P23229 1130 aa23.52■■□□□ 1.36
SHH-202ENST00000430104 LMBR1LQ6UX01 489 aa23.52■■□□□ 1.36
SHH-202ENST00000430104 CLUAP1Q96AJ1 413 aa23.52■■□□□ 1.36
SHH-202ENST00000430104 GPSM2P81274 684 aa23.51■■□□□ 1.35
SHH-202ENST00000430104 SUPT20HQ8NEM7 779 aa23.51■■□□□ 1.35
SHH-202ENST00000430104 USP44Q9H0E7 712 aa23.51■■□□□ 1.35
SHH-202ENST00000430104 UTYO14607 1347 aa23.51■■□□□ 1.35
SHH-202ENST00000430104 RTL9Q8NET4 1388 aa23.51■■□□□ 1.35
SHH-202ENST00000430104 ANKRD18BA2A2Z9 1011 aa23.5■■□□□ 1.35
SHH-202ENST00000430104 TRIM27P14373 513 aa23.5■■□□□ 1.35
SHH-202ENST00000430104 IGHMBP2P38935 993 aaKnown RBP23.5■■□□□ 1.35
SHH-202ENST00000430104 ZKSCAN2Q63HK3 967 aa23.5■■□□□ 1.35
SHH-202ENST00000430104 ATF7IPQ6VMQ6 1270 aa23.5■■□□□ 1.35
SHH-202ENST00000430104 LARGE2Q8N3Y3 721 aa23.5■■□□□ 1.35
SHH-202ENST00000430104 C6orf229H3BNL8 230 aa23.49■■□□□ 1.35
SHH-202ENST00000430104 PPIP5K2O43314 1243 aa23.49■■□□□ 1.35
SHH-202ENST00000430104 IFIT5Q13325 482 aaKnown RBP23.49■■□□□ 1.35
SHH-202ENST00000430104 AOC3Q16853 763 aa23.49■■□□□ 1.35
SHH-202ENST00000430104 ANKIB1Q9P2G1 1089 aa23.49■■□□□ 1.35
SHH-202ENST00000430104 JDP2Q8WYK2 163 aa23.48■■□□□ 1.35
SHH-202ENST00000430104 KAZALD1Q96I82 304 aa23.48■■□□□ 1.35
SHH-202ENST00000430104 RTFDC1Q9BY42 306 aaPredicted RBP23.48■■□□□ 1.35
SHH-202ENST00000430104 BICC1Q9H694 974 aaKnown RBP23.48■■□□□ 1.35
SHH-202ENST00000430104 ZC3H4Q9UPT8 1303 aaKnown RBP23.48■■□□□ 1.35
SHH-202ENST00000430104 CCDC57Q2TAC2 916 aa23.47■■□□□ 1.35
SHH-202ENST00000430104 DPY19L2Q6NUT2 758 aa23.47■■□□□ 1.35
SHH-202ENST00000430104 MPHOSPH8Q99549 860 aa23.47■■□□□ 1.35
SHH-202ENST00000430104 KDM2BQ8NHM5 1336 aa23.47■■□□□ 1.35
SHH-202ENST00000430104 GLTPD2A6NH11 291 aa23.46■■□□□ 1.35
SHH-202ENST00000430104 RIMBP2O15034 1052 aa23.46■■□□□ 1.35
SHH-202ENST00000430104 COL4A5P29400 1685 aa23.46■■□□□ 1.35
SHH-202ENST00000430104 TAF7LQ5H9L4 462 aa23.46■■□□□ 1.35
SHH-202ENST00000430104 INTS3Q68E01 1043 aaKnown RBP23.46■■□□□ 1.35
SHH-202ENST00000430104 ZNF594Q96JF6 807 aaPredicted RBP23.46■■□□□ 1.35
SHH-202ENST00000430104 GPR101Q96P66 508 aaPredicted RBP23.46■■□□□ 1.35
SHH-202ENST00000430104 NMRK2Q9NPI5 230 aa23.46■■□□□ 1.35
SHH-202ENST00000430104 DUOX1Q9NRD9 1551 aa23.46■■□□□ 1.35
SHH-202ENST00000430104 BSDC1Q9NW68 430 aaPredicted RBP23.46■■□□□ 1.35
SHH-202ENST00000430104 POLLQ9UGP5 575 aa23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms