RNA–Protein interactions for RNA: ENST00000428828.1

CECR3-201, Transcript of cat eye syndrome chromosome region, candidate 3, humanhuman

TSL 1 (best) BASIC

Gene CECR3, Length 1,915 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CECR3-201ENST00000428828 ZNF34Q8IZ26 560 aa13.95□□□□□ -0.18
CECR3-201ENST00000428828 IBTKQ9P2D0 1353 aaPredicted RBP13.95□□□□□ -0.18
CECR3-201ENST00000428828 KIF20AO95235 890 aa13.94□□□□□ -0.18
CECR3-201ENST00000428828 ZBTB7BO15156 539 aaPredicted RBP13.94□□□□□ -0.18
CECR3-201ENST00000428828 NBPF7P0C2Y1 421 aaPredicted RBP13.94□□□□□ -0.18
CECR3-201ENST00000428828 UBE3BQ7Z3V4 1068 aa13.94□□□□□ -0.18
CECR3-201ENST00000428828 CCDC191Q8NCU4 936 aa13.94□□□□□ -0.18
CECR3-201ENST00000428828 SETDB2Q96T68 719 aa13.94□□□□□ -0.18
CECR3-201ENST00000428828 USP44Q9H0E7 712 aa13.94□□□□□ -0.18
CECR3-201ENST00000428828 GRM8O00222 908 aa13.93□□□□□ -0.18
CECR3-201ENST00000428828 ZNF500O60304 480 aaPredicted RBP13.93□□□□□ -0.18
CECR3-201ENST00000428828 UBTFL1P0CB47 393 aaPredicted RBP13.93□□□□□ -0.18
CECR3-201ENST00000428828 NFIXQ14938 502 aa13.93□□□□□ -0.18
CECR3-201ENST00000428828 SUSD4Q5VX71 490 aa13.93□□□□□ -0.18
CECR3-201ENST00000428828 TRMT112Q9UI30 125 aaKnown RBP13.93□□□□□ -0.18
CECR3-201ENST00000428828 NPHP1O15259 732 aa13.92□□□□□ -0.18
CECR3-201ENST00000428828 FAM89AQ96GI7 184 aa13.92□□□□□ -0.18
CECR3-201ENST00000428828 GTPBP4Q9BZE4 634 aaKnown RBP13.92□□□□□ -0.18
CECR3-201ENST00000428828 CARMIL3Q8ND23 1372 aa13.92□□□□□ -0.18
CECR3-201ENST00000428828 PARP10Q53GL7 1025 aa13.92□□□□□ -0.18
CECR3-201ENST00000428828 NUTM1Q86Y26 1132 aa13.92□□□□□ -0.18
CECR3-201ENST00000428828 SYNE4Q8N205 404 aa13.92□□□□□ -0.18
CECR3-201ENST00000428828 SPEF2Q9C093 1822 aa13.91□□□□□ -0.18
CECR3-201ENST00000428828 TNRC6CQ9HCJ0 1690 aaKnown RBP13.91□□□□□ -0.18
CECR3-201ENST00000428828 GNAI3P08754 354 aa13.91□□□□□ -0.18
CECR3-201ENST00000428828 TRIM28Q13263 835 aaKnown RBP13.91□□□□□ -0.18
CECR3-201ENST00000428828 PPP1R42Q7Z4L9 355 aa13.91□□□□□ -0.18
CECR3-201ENST00000428828 NBPF5PQ86XG9 351 aaPredicted RBP13.91□□□□□ -0.18
CECR3-201ENST00000428828 CCDC24Q8N4L8 307 aa13.91□□□□□ -0.18
CECR3-201ENST00000428828 UTP14AQ9BVJ6 771 aaKnown RBP13.91□□□□□ -0.18
CECR3-201ENST00000428828 ZBTB40Q9NUA8 1239 aa13.91□□□□□ -0.18
CECR3-201ENST00000428828 LRRFIP2Q9Y608 721 aaKnown RBP13.91□□□□□ -0.18
CECR3-201ENST00000428828 NRXN2Q9P2S2 1712 aa13.9□□□□□ -0.18
CECR3-201ENST00000428828 RGL2O15211 777 aa13.9□□□□□ -0.18
CECR3-201ENST00000428828 ZBTB7AO95365 584 aa13.9□□□□□ -0.18
CECR3-201ENST00000428828 NTSR2O95665 410 aa13.9□□□□□ -0.18
CECR3-201ENST00000428828 MSNP26038 577 aaKnown RBP13.9□□□□□ -0.18
CECR3-201ENST00000428828 GTF2E1P29083 439 aaPredicted RBP13.9□□□□□ -0.18
CECR3-201ENST00000428828 MCM5P33992 734 aa13.9□□□□□ -0.18
CECR3-201ENST00000428828 CSPP1Q1MSJ5 1256 aa13.9□□□□□ -0.18
CECR3-201ENST00000428828 NLGN1Q8N2Q7 840 aa13.9□□□□□ -0.18
CECR3-201ENST00000428828 SUCLG2Q96I99 432 aa13.9□□□□□ -0.18
CECR3-201ENST00000428828 GZF1Q9H116 711 aaPredicted RBP13.9□□□□□ -0.18
CECR3-201ENST00000428828 CIZ1Q9ULV3 898 aaPredicted RBP13.9□□□□□ -0.18
CECR3-201ENST00000428828 TAF1P21675 1872 aa13.9□□□□□ -0.18
CECR3-201ENST00000428828 ANKRD31Q8N7Z5 1873 aa13.9□□□□□ -0.18
CECR3-201ENST00000428828 PCCAP05165 728 aaPredicted RBP13.9□□□□□ -0.18
CECR3-201ENST00000428828 DDR1Q08345 913 aa13.9□□□□□ -0.18
CECR3-201ENST00000428828 ZBTB38Q8NAP3 1195 aaPredicted RBP13.9□□□□□ -0.18
CECR3-201ENST00000428828 CHMP4BQ9H444 224 aaKnown RBP13.9□□□□□ -0.18
CECR3-201ENST00000428828 CACNA1SQ13698 1873 aa13.89□□□□□ -0.19
CECR3-201ENST00000428828 H7C1W4 665 aa13.89□□□□□ -0.19
CECR3-201ENST00000428828 GNAI2P04899 355 aa13.89□□□□□ -0.19
CECR3-201ENST00000428828 MMP10P09238 476 aa13.89□□□□□ -0.19
CECR3-201ENST00000428828 TAF3Q5VWG9 929 aa13.89□□□□□ -0.19
CECR3-201ENST00000428828 CCDC94Q9BW85 323 aaPredicted RBP13.89□□□□□ -0.19
CECR3-201ENST00000428828 SH3TC1Q8TE82 1336 aa13.89□□□□□ -0.19
CECR3-201ENST00000428828 SEC24BO95487 1268 aa13.88□□□□□ -0.19
CECR3-201ENST00000428828 TM4SF1P30408 202 aa13.88□□□□□ -0.19
CECR3-201ENST00000428828 DDIT3P35638 169 aa13.88□□□□□ -0.19
CECR3-201ENST00000428828 ERFEQ4G0M1 354 aa13.88□□□□□ -0.19
CECR3-201ENST00000428828 ANP32BQ92688 251 aaKnown RBP13.88□□□□□ -0.19
CECR3-201ENST00000428828 UTYO14607 1347 aa13.88□□□□□ -0.19
CECR3-201ENST00000428828 ABCC12Q96J65 1359 aa13.88□□□□□ -0.19
CECR3-201ENST00000428828 POLRMTO00411 1230 aaKnown RBP13.88□□□□□ -0.19
CECR3-201ENST00000428828 IRS4O14654 1257 aaPredicted RBP13.88□□□□□ -0.19
CECR3-201ENST00000428828 SERPINB2P05120 415 aa13.88□□□□□ -0.19
CECR3-201ENST00000428828 HCLS1P14317 486 aaPredicted RBP13.88□□□□□ -0.19
CECR3-201ENST00000428828 CASP7P55210 303 aa13.88□□□□□ -0.19
CECR3-201ENST00000428828 TAF7LQ5H9L4 462 aa13.88□□□□□ -0.19
CECR3-201ENST00000428828 CNBD1Q8NA66 436 aa13.88□□□□□ -0.19
CECR3-201ENST00000428828 NYXQ9GZU5 481 aa13.88□□□□□ -0.19
CECR3-201ENST00000428828 BICC1Q9H694 974 aaKnown RBP13.88□□□□□ -0.19
CECR3-201ENST00000428828 ATF5Q9Y2D1 282 aaPredicted RBP13.88□□□□□ -0.19
CECR3-201ENST00000428828 PARP3Q9Y6F1 533 aa13.88□□□□□ -0.19
CECR3-201ENST00000428828 LETM1O95202 739 aaPredicted RBP13.87□□□□□ -0.19
CECR3-201ENST00000428828 ZSCAN20P17040 1043 aaPredicted RBP13.87□□□□□ -0.19
CECR3-201ENST00000428828 BBXQ8WY36 941 aaPredicted RBP13.87□□□□□ -0.19
CECR3-201ENST00000428828 CCDC85AQ96PX6 553 aaPredicted RBP13.87□□□□□ -0.19
CECR3-201ENST00000428828 FAM13BQ9NYF5 915 aa13.87□□□□□ -0.19
CECR3-201ENST00000428828 NOL7Q9UMY1 257 aaKnown RBP13.87□□□□□ -0.19
CECR3-201ENST00000428828 CHMP3Q9Y3E7 222 aa13.87□□□□□ -0.19
CECR3-201ENST00000428828 EPHA10Q5JZY3 1008 aa13.86□□□□□ -0.19
CECR3-201ENST00000428828 TPTE2Q6XPS3 522 aa13.86□□□□□ -0.19
CECR3-201ENST00000428828 KAZALD1Q96I82 304 aa13.86□□□□□ -0.19
CECR3-201ENST00000428828 PCDHB15Q9Y5E8 787 aa13.86□□□□□ -0.19
CECR3-201ENST00000428828 PRR5LQ6MZQ0 368 aa13.86□□□□□ -0.19
CECR3-201ENST00000428828 SLC16A10Q8TF71 515 aa13.86□□□□□ -0.19
CECR3-201ENST00000428828 CDHR2Q9BYE9 1310 aa13.86□□□□□ -0.19
CECR3-201ENST00000428828 COL11A2P13942 1736 aaPredicted RBP13.85□□□□□ -0.19
CECR3-201ENST00000428828 ST5P78524 1137 aa13.85□□□□□ -0.19
CECR3-201ENST00000428828 IPO4Q8TEX9 1081 aaKnown RBP13.85□□□□□ -0.19
CECR3-201ENST00000428828 GBP4Q96PP9 640 aa13.85□□□□□ -0.19
CECR3-201ENST00000428828 SOCS7O14512 581 aa13.84□□□□□ -0.19
CECR3-201ENST00000428828 CEP85Q6P2H3 762 aa13.84□□□□□ -0.19
CECR3-201ENST00000428828 GAS2L3Q86XJ1 694 aa13.84□□□□□ -0.19
CECR3-201ENST00000428828 MTFR1LQ9H019 292 aa13.84□□□□□ -0.19
CECR3-201ENST00000428828 HDAC5Q9UQL6 1122 aa13.84□□□□□ -0.19
CECR3-201ENST00000428828 UQCRHLA0A096LP55 91 aa13.84□□□□□ -0.19
CECR3-201ENST00000428828 UQCRHP07919 91 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms