RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SKAP1Q86WV1 359 aa21.16■□□□□ 0.98
CCDC28B-202ENST00000421922 NUTM1Q86Y26 1132 aa21.16■□□□□ 0.98
CCDC28B-202ENST00000421922 SYNE4Q8N205 404 aa21.16■□□□□ 0.98
CCDC28B-202ENST00000421922 PA2G4Q9UQ80 394 aaKnown RBP21.16■□□□□ 0.98
CCDC28B-202ENST00000421922 NOP58Q9Y2X3 529 aaKnown RBP21.16■□□□□ 0.98
CCDC28B-202ENST00000421922 HCLS1P14317 486 aaPredicted RBP21.15■□□□□ 0.98
CCDC28B-202ENST00000421922 IFIT5Q13325 482 aaKnown RBP21.15■□□□□ 0.98
CCDC28B-202ENST00000421922 SIL1Q9H173 461 aa21.15■□□□□ 0.98
CCDC28B-202ENST00000421922 NFIXQ14938 502 aa21.14■□□□□ 0.98
CCDC28B-202ENST00000421922 FAM161AQ3B820 660 aa21.14■□□□□ 0.98
CCDC28B-202ENST00000421922 CCDC152Q4G0S7 254 aa21.14■□□□□ 0.98
CCDC28B-202ENST00000421922 COL23A1Q86Y22 540 aaPredicted RBP21.14■□□□□ 0.98
CCDC28B-202ENST00000421922 CCDC85AQ96PX6 553 aaPredicted RBP21.14■□□□□ 0.98
CCDC28B-202ENST00000421922 COPRSQ9NQ92 184 aa21.14■□□□□ 0.98
CCDC28B-202ENST00000421922 PNPLA7Q6ZV29 1317 aa21.14■□□□□ 0.97
CCDC28B-202ENST00000421922 ANKRD18BA2A2Z9 1011 aa21.13■□□□□ 0.97
CCDC28B-202ENST00000421922 SMARCA5O60264 1052 aaPredicted RBP21.13■□□□□ 0.97
CCDC28B-202ENST00000421922 ERFEQ4G0M1 354 aa21.13■□□□□ 0.97
CCDC28B-202ENST00000421922 CNBD1Q8NA66 436 aa21.13■□□□□ 0.97
CCDC28B-202ENST00000421922 ANO8Q9HCE9 1232 aaPredicted RBP21.13■□□□□ 0.97
CCDC28B-202ENST00000421922 CASZ1Q86V15 1759 aa21.13■□□□□ 0.97
CCDC28B-202ENST00000421922 CSF1RP07333 972 aa21.12■□□□□ 0.97
CCDC28B-202ENST00000421922 NLGN1Q8N2Q7 840 aa21.12■□□□□ 0.97
CCDC28B-202ENST00000421922 TTLL11Q8NHH1 800 aa21.12■□□□□ 0.97
CCDC28B-202ENST00000421922 RHPN1Q8TCX5 695 aa21.12■□□□□ 0.97
CCDC28B-202ENST00000421922 RFX5P48382 616 aaPredicted RBP21.12■□□□□ 0.97
CCDC28B-202ENST00000421922 ST5P78524 1137 aa21.12■□□□□ 0.97
CCDC28B-202ENST00000421922 PTPN12Q05209 780 aaKnown RBP21.12■□□□□ 0.97
CCDC28B-202ENST00000421922 KLHDC4Q8TBB5 520 aa21.12■□□□□ 0.97
CCDC28B-202ENST00000421922 ITGA6P23229 1130 aa21.11■□□□□ 0.97
CCDC28B-202ENST00000421922 GREM2Q9H772 168 aa21.11■□□□□ 0.97
CCDC28B-202ENST00000421922 PDE4AP27815 886 aa21.1■□□□□ 0.97
CCDC28B-202ENST00000421922 CLASRPQ8N2M8 674 aaKnown RBP21.1■□□□□ 0.97
CCDC28B-202ENST00000421922 IL1RAPL2Q9NP60 686 aa21.1■□□□□ 0.97
CCDC28B-202ENST00000421922 ABCC12Q96J65 1359 aa21.09■□□□□ 0.97
CCDC28B-202ENST00000421922 NLRP3Q96P20 1036 aa21.09■□□□□ 0.97
CCDC28B-202ENST00000421922 FBXO3Q9UK99 471 aa21.09■□□□□ 0.97
CCDC28B-202ENST00000421922 SERPINB2P05120 415 aa21.08■□□□□ 0.97
CCDC28B-202ENST00000421922 SLC10A5Q5PT55 438 aa21.08■□□□□ 0.97
CCDC28B-202ENST00000421922 RTL9Q8NET4 1388 aa21.07■□□□□ 0.96
CCDC28B-202ENST00000421922 EYA2O00167 538 aa21.07■□□□□ 0.96
CCDC28B-202ENST00000421922 CIAO1O76071 339 aa21.07■□□□□ 0.96
CCDC28B-202ENST00000421922 TM4SF1P30408 202 aa21.07■□□□□ 0.96
CCDC28B-202ENST00000421922 IL15P40933 162 aaPredicted RBP21.07■□□□□ 0.96
CCDC28B-202ENST00000421922 ZNF594Q96JF6 807 aaPredicted RBP21.07■□□□□ 0.96
CCDC28B-202ENST00000421922 PARP3Q9Y6F1 533 aa21.07■□□□□ 0.96
CCDC28B-202ENST00000421922 SPEF2Q9C093 1822 aa21.07■□□□□ 0.96
CCDC28B-202ENST00000421922 GPATCH3Q96I76 525 aa21.06■□□□□ 0.96
CCDC28B-202ENST00000421922 CDC5LQ99459 802 aaKnown RBP21.06■□□□□ 0.96
CCDC28B-202ENST00000421922 CNNM1Q9NRU3 951 aa21.06■□□□□ 0.96
CCDC28B-202ENST00000421922 IFIT2P09913 472 aaKnown RBP21.05■□□□□ 0.96
CCDC28B-202ENST00000421922 IGHMBP2P38935 993 aaKnown RBP21.05■□□□□ 0.96
CCDC28B-202ENST00000421922 MPHOSPH8Q99549 860 aa21.05■□□□□ 0.96
CCDC28B-202ENST00000421922 RIC1Q4ADV7 1423 aa21.05■□□□□ 0.96
CCDC28B-202ENST00000421922 POLRMTO00411 1230 aaKnown RBP21.04■□□□□ 0.96
CCDC28B-202ENST00000421922 SF3B3Q15393 1217 aaKnown RBP21.04■□□□□ 0.96
CCDC28B-202ENST00000421922 MSL1Q68DK7 614 aa21.04■□□□□ 0.96
CCDC28B-202ENST00000421922 PRR5LQ6MZQ0 368 aa21.04■□□□□ 0.96
CCDC28B-202ENST00000421922 LDHAL6AQ6ZMR3 332 aa21.04■□□□□ 0.96
CCDC28B-202ENST00000421922 CCDC24Q8N4L8 307 aa21.04■□□□□ 0.96
CCDC28B-202ENST00000421922 MX1P20591 662 aa21.04■□□□□ 0.96
CCDC28B-202ENST00000421922 YY1P25490 414 aa21.04■□□□□ 0.96
CCDC28B-202ENST00000421922 DDR1Q08345 913 aa21.04■□□□□ 0.96
CCDC28B-202ENST00000421922 AACSQ86V21 672 aa21.04■□□□□ 0.96
CCDC28B-202ENST00000421922 C16orf71Q8IYS4 520 aaPredicted RBP21.04■□□□□ 0.96
CCDC28B-202ENST00000421922 TNRC6CQ9HCJ0 1690 aaKnown RBP21.03■□□□□ 0.96
CCDC28B-202ENST00000421922 SASH1O94885 1247 aa21.03■□□□□ 0.96
CCDC28B-202ENST00000421922 MMP10P09238 476 aa21.03■□□□□ 0.96
CCDC28B-202ENST00000421922 TFCP2Q12800 502 aa21.03■□□□□ 0.96
CCDC28B-202ENST00000421922 PLEKHM2Q8IWE5 1019 aa21.03■□□□□ 0.96
CCDC28B-202ENST00000421922 CEP126Q9P2H0 1117 aa21.03■□□□□ 0.96
CCDC28B-202ENST00000421922 LRRC24Q50LG9 513 aa21.02■□□□□ 0.96
CCDC28B-202ENST00000421922 METTL24Q5JXM2 366 aa21.02■□□□□ 0.96
CCDC28B-202ENST00000421922 DDX46Q7L014 1031 aaKnown RBP21.02■□□□□ 0.96
CCDC28B-202ENST00000421922 ANKRD18AQ8IVF6 992 aa21.02■□□□□ 0.96
CCDC28B-202ENST00000421922 NRXN2Q9P2S2 1712 aa21.01■□□□□ 0.95
CCDC28B-202ENST00000421922 ATG9AQ7Z3C6 839 aa21.01■□□□□ 0.95
CCDC28B-202ENST00000421922 OTUD7AQ8TE49 926 aaPredicted RBP21.01■□□□□ 0.95
CCDC28B-202ENST00000421922 RPGRQ92834 1020 aaKnown RBP21.01■□□□□ 0.95
CCDC28B-202ENST00000421922 SEC31BQ9NQW1 1179 aa21.01■□□□□ 0.95
CCDC28B-202ENST00000421922 PDE1AP54750 535 aa21■□□□□ 0.95
CCDC28B-202ENST00000421922 PUS3Q9BZE2 481 aaKnown RBP21■□□□□ 0.95
CCDC28B-202ENST00000421922 AKAP2Q9Y2D5 859 aa21■□□□□ 0.95
CCDC28B-202ENST00000421922 AOX1Q06278 1338 aa21■□□□□ 0.95
CCDC28B-202ENST00000421922 TNNI3KQ59H18 835 aa20.99■□□□□ 0.95
CCDC28B-202ENST00000421922 MROH5Q6ZUA9 1318 aa20.99■□□□□ 0.95
CCDC28B-202ENST00000421922 C3orf67Q6ZVT6 689 aa20.99■□□□□ 0.95
CCDC28B-202ENST00000421922 SLC16A10Q8TF71 515 aa20.99■□□□□ 0.95
CCDC28B-202ENST00000421922 FPGT-TNNI3KV9GXZ4 949 aa20.99■□□□□ 0.95
CCDC28B-202ENST00000421922 ERC2O15083 957 aa20.98■□□□□ 0.95
CCDC28B-202ENST00000421922 TTC22Q5TAA0 569 aa20.98■□□□□ 0.95
CCDC28B-202ENST00000421922 GPR108Q9NPR9 543 aa20.98■□□□□ 0.95
CCDC28B-202ENST00000421922 TTC41PQ6P2S7 1318 aa20.97■□□□□ 0.95
CCDC28B-202ENST00000421922 BMP2KLQ5H9B9 411 aa20.97■□□□□ 0.95
CCDC28B-202ENST00000421922 OSBPL3Q9H4L5 887 aa20.97■□□□□ 0.95
CCDC28B-202ENST00000421922 ZNF609O15014 1411 aa20.97■□□□□ 0.95
CCDC28B-202ENST00000421922 EAF2Q96CJ1 260 aaPredicted RBP20.96■□□□□ 0.95
CCDC28B-202ENST00000421922 RBM17Q96I25 401 aaKnown RBP20.96■□□□□ 0.95
CCDC28B-202ENST00000421922 NEUROD6Q96NK8 337 aa20.96■□□□□ 0.95
CCDC28B-202ENST00000421922 CCDC8Q9H0W5 538 aaPredicted RBP20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms