RNA–Protein interactions for RNA: ENST00000420720.5

RFX3-205, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 492 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-205ENST00000420720 PRR5LQ6MZQ0 368 aa9.53□□□□□ -0.88
RFX3-205ENST00000420720 PAXIP1Q6ZW49 1069 aaPredicted RBP9.53□□□□□ -0.88
RFX3-205ENST00000420720 NPM2Q86SE8 214 aaKnown RBP9.53□□□□□ -0.88
RFX3-205ENST00000420720 ZNF687Q8N1G0 1237 aa9.53□□□□□ -0.88
RFX3-205ENST00000420720 SLC17A8Q8NDX2 589 aa9.53□□□□□ -0.88
RFX3-205ENST00000420720 FMNL2Q96PY5 1086 aa9.53□□□□□ -0.88
RFX3-205ENST00000420720 CA12O43570 354 aa9.52□□□□□ -0.89
RFX3-205ENST00000420720 C21orf2O43822 256 aa9.52□□□□□ -0.89
RFX3-205ENST00000420720 PDE6BP35913 854 aa9.52□□□□□ -0.89
RFX3-205ENST00000420720 ECE1P42892 770 aa9.52□□□□□ -0.89
RFX3-205ENST00000420720 PIP4K2AP48426 406 aaPredicted RBP9.52□□□□□ -0.89
RFX3-205ENST00000420720 EAPPQ56P03 285 aaPredicted RBP9.52□□□□□ -0.89
RFX3-205ENST00000420720 CNTROBQ8N137 903 aa9.52□□□□□ -0.89
RFX3-205ENST00000420720 CFAP53Q96M91 514 aa9.52□□□□□ -0.89
RFX3-205ENST00000420720 BRIP1Q9BX63 1249 aa9.52□□□□□ -0.89
RFX3-205ENST00000420720 RSPH6AQ9H0K4 717 aa9.52□□□□□ -0.89
RFX3-205ENST00000420720 USP16Q9Y5T5 823 aa9.52□□□□□ -0.89
RFX3-205ENST00000420720 PRAMEF22A3QJZ6 481 aa9.51□□□□□ -0.89
RFX3-205ENST00000420720 IQCA1LA6NCM1 817 aa9.51□□□□□ -0.89
RFX3-205ENST00000420720 NPHP1O15259 732 aa9.51□□□□□ -0.89
RFX3-205ENST00000420720 CAMTA2O94983 1202 aa9.51□□□□□ -0.89
RFX3-205ENST00000420720 MAP2K2P36507 400 aa9.51□□□□□ -0.89
RFX3-205ENST00000420720 DZIP3Q86Y13 1208 aaKnown RBP9.51□□□□□ -0.89
RFX3-205ENST00000420720 SETDB2Q96T68 719 aa9.51□□□□□ -0.89
RFX3-205ENST00000420720 DDX21Q9NR30 783 aaKnown RBP eCLIP9.51□□□□□ -0.89
RFX3-205ENST00000420720 NUDCQ9Y266 331 aa9.51□□□□□ -0.89
RFX3-205ENST00000420720 FER1L6Q2WGJ9 1857 aa9.51□□□□□ -0.89
RFX3-205ENST00000420720 CEMIPQ8WUJ3 1361 aa9.5□□□□□ -0.89
RFX3-205ENST00000420720 ZNF316A6NFI3 1004 aaPredicted RBP9.5□□□□□ -0.89
RFX3-205ENST00000420720 U2AF1L5P0DN76 240 aaPredicted RBP9.5□□□□□ -0.89
RFX3-205ENST00000420720 U2AF1Q01081 240 aaKnown RBP eCLIP9.5□□□□□ -0.89
RFX3-205ENST00000420720 DCTN1Q14203 1278 aa9.5□□□□□ -0.89
RFX3-205ENST00000420720 MCM10Q7L590 875 aa9.5□□□□□ -0.89
RFX3-205ENST00000420720 RTF1Q92541 710 aaKnown RBP9.5□□□□□ -0.89
RFX3-205ENST00000420720 PDZRN3Q9UPQ7 1066 aa9.5□□□□□ -0.89
RFX3-205ENST00000420720 PPP2R1AP30153 589 aa9.49□□□□□ -0.89
RFX3-205ENST00000420720 BRPF1P55201 1214 aaPredicted RBP9.49□□□□□ -0.89
RFX3-205ENST00000420720 ST5P78524 1137 aa9.49□□□□□ -0.89
RFX3-205ENST00000420720 CST9Q5W186 159 aa9.49□□□□□ -0.89
RFX3-205ENST00000420720 CNBD1Q8NA66 436 aa9.49□□□□□ -0.89
RFX3-205ENST00000420720 SNRPA1P09661 255 aaKnown RBP9.48□□□□□ -0.89
RFX3-205ENST00000420720 NUDT7P0C024 238 aa9.48□□□□□ -0.89
RFX3-205ENST00000420720 CNKSR1Q969H4 720 aa9.48□□□□□ -0.89
RFX3-205ENST00000420720 NRXN2Q9P2S2 1712 aa9.48□□□□□ -0.89
RFX3-205ENST00000420720 AFDNP55196 1824 aaKnown RBP9.47□□□□□ -0.89
RFX3-205ENST00000420720 FAM177BA6PVY3 158 aa9.47□□□□□ -0.89
RFX3-205ENST00000420720 SRGNP10124 158 aa9.47□□□□□ -0.89
RFX3-205ENST00000420720 CIAPIN1Q6FI81 312 aa9.47□□□□□ -0.89
RFX3-205ENST00000420720 STYK1Q6J9G0 422 aa9.47□□□□□ -0.89
RFX3-205ENST00000420720 PRPF40BQ6NWY9 871 aaKnown RBP9.47□□□□□ -0.89
RFX3-205ENST00000420720 NBPF5PQ86XG9 351 aaPredicted RBP9.47□□□□□ -0.89
RFX3-205ENST00000420720 HS6ST3Q8IZP7 471 aa9.47□□□□□ -0.89
RFX3-205ENST00000420720 MASTLQ96GX5 879 aa9.47□□□□□ -0.89
RFX3-205ENST00000420720 ZIC5Q96T25 663 aa9.47□□□□□ -0.89
RFX3-205ENST00000420720 TAOK3Q9H2K8 898 aa9.47□□□□□ -0.89
RFX3-205ENST00000420720 TLL2Q9Y6L7 1015 aa9.47□□□□□ -0.89
RFX3-205ENST00000420720 UNC80Q8N2C7 3258 aa9.46□□□□□ -0.89
RFX3-205ENST00000420720 UBR2Q8IWV8 1755 aa9.46□□□□□ -0.9
RFX3-205ENST00000420720 NBPF26B4DH59 902 aa9.46□□□□□ -0.9
RFX3-205ENST00000420720 EPHX2P34913 555 aa9.46□□□□□ -0.9
RFX3-205ENST00000420720 TAF7Q15545 349 aaPredicted RBP9.46□□□□□ -0.9
RFX3-205ENST00000420720 NBPF10Q6P3W6 841 aaKnown RBP9.46□□□□□ -0.9
RFX3-205ENST00000420720 POTEEQ6S8J3 1075 aa9.46□□□□□ -0.9
RFX3-205ENST00000420720 CLEC4GQ6UXB4 293 aa9.46□□□□□ -0.9
RFX3-205ENST00000420720 MIS18AQ9NYP9 233 aa9.46□□□□□ -0.9
RFX3-205ENST00000420720 HPS5Q9UPZ3 1129 aa9.46□□□□□ -0.9
RFX3-205ENST00000420720 NIP7Q9Y221 180 aaKnown RBP eCLIP9.46□□□□□ -0.9
RFX3-205ENST00000420720 ZNF652Q9Y2D9 606 aa9.46□□□□□ -0.9
RFX3-205ENST00000420720 ZNF541Q9H0D2 1346 aa9.46□□□□□ -0.9
RFX3-205ENST00000420720 RANBP2P49792 3224 aaKnown RBP9.45□□□□□ -0.9
RFX3-205ENST00000420720 TRPM7Q96QT4 1865 aa9.45□□□□□ -0.9
RFX3-205ENST00000420720 TRAF5O00463 557 aa9.45□□□□□ -0.9
RFX3-205ENST00000420720 HTATSF1O43719 755 aaKnown RBP9.45□□□□□ -0.9
RFX3-205ENST00000420720 NGEFQ8N5V2 710 aa9.45□□□□□ -0.9
RFX3-205ENST00000420720 RNF166Q96A37 237 aaPredicted RBP9.45□□□□□ -0.9
RFX3-205ENST00000420720 HACL1Q9UJ83 578 aa9.45□□□□□ -0.9
RFX3-205ENST00000420720 PCDHGA4Q9Y5G9 962 aa9.45□□□□□ -0.9
RFX3-205ENST00000420720 LTBP3Q9NS15 1303 aa9.45□□□□□ -0.9
RFX3-205ENST00000420720 BRCA2P51587 3418 aa9.44□□□□□ -0.9
RFX3-205ENST00000420720 HTTP42858 3142 aa9.44□□□□□ -0.9
RFX3-205ENST00000420720 NPR1P16066 1061 aa9.44□□□□□ -0.9
RFX3-205ENST00000420720 HLFQ16534 295 aa9.44□□□□□ -0.9
RFX3-205ENST00000420720 CCDC93Q567U6 631 aa9.44□□□□□ -0.9
RFX3-205ENST00000420720 SOGA3Q5TF21 947 aa9.44□□□□□ -0.9
RFX3-205ENST00000420720 TPTE2Q6XPS3 522 aa9.44□□□□□ -0.9
RFX3-205ENST00000420720 C7orf43Q8WVR3 580 aa9.44□□□□□ -0.9
RFX3-205ENST00000420720 RNF123Q5XPI4 1314 aa9.44□□□□□ -0.9
RFX3-205ENST00000420720 TRIOBPQ9H2D6 2365 aa9.44□□□□□ -0.9
RFX3-205ENST00000420720 COL11A2P13942 1736 aaPredicted RBP9.43□□□□□ -0.9
RFX3-205ENST00000420720 NEFMP07197 916 aa9.43□□□□□ -0.9
RFX3-205ENST00000420720 GTF2E1P29083 439 aaPredicted RBP9.43□□□□□ -0.9
RFX3-205ENST00000420720 OLFM4Q6UX06 510 aa9.43□□□□□ -0.9
RFX3-205ENST00000420720 SAPCD2Q86UD0 394 aa9.43□□□□□ -0.9
RFX3-205ENST00000420720 LHX6Q9UPM6 363 aa9.43□□□□□ -0.9
RFX3-205ENST00000420720 RRP7AQ9Y3A4 280 aaKnown RBP9.43□□□□□ -0.9
RFX3-205ENST00000420720 SCN7AQ01118 1682 aa9.42□□□□□ -0.9
RFX3-205ENST00000420720 KLRG2A4D1S0 409 aaPredicted RBP9.42□□□□□ -0.9
RFX3-205ENST00000420720 FKBP4Q02790 459 aaKnown RBP eCLIP9.42□□□□□ -0.9
RFX3-205ENST00000420720 PNMA8AQ86V59 439 aaPredicted RBP9.42□□□□□ -0.9
RFX3-205ENST00000420720 TMC2Q8TDI7 906 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms