RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 JARID2Q92833 1246 aaPredicted RBP23.67■■□□□ 1.38
PTCD3-204ENST00000418628 RBM17Q96I25 401 aaKnown RBP23.67■■□□□ 1.38
PTCD3-204ENST00000418628 LTBP3Q9NS15 1303 aa23.66■■□□□ 1.38
PTCD3-204ENST00000418628 NFKBIEO00221 500 aa23.66■■□□□ 1.38
PTCD3-204ENST00000418628 GRM8O00222 908 aa23.65■■□□□ 1.38
PTCD3-204ENST00000418628 SLC4A10Q6U841 1118 aa23.65■■□□□ 1.38
PTCD3-204ENST00000418628 API5Q9BZZ5 524 aaKnown RBP23.65■■□□□ 1.38
PTCD3-204ENST00000418628 C21orf2O43822 256 aa23.64■■□□□ 1.37
PTCD3-204ENST00000418628 CTSWP56202 376 aa23.64■■□□□ 1.37
PTCD3-204ENST00000418628 SOGA3Q5TF21 947 aa23.64■■□□□ 1.37
PTCD3-204ENST00000418628 PRELPP51888 382 aa23.63■■□□□ 1.37
PTCD3-204ENST00000418628 GRAPQ13588 217 aa23.63■■□□□ 1.37
PTCD3-204ENST00000418628 SLC51AQ86UW1 340 aa23.63■■□□□ 1.37
PTCD3-204ENST00000418628 GRAPLQ8TC17 118 aaPredicted RBP23.63■■□□□ 1.37
PTCD3-204ENST00000418628 PSME4Q14997 1843 aa23.63■■□□□ 1.37
PTCD3-204ENST00000418628 TRIM27P14373 513 aa23.62■■□□□ 1.37
PTCD3-204ENST00000418628 DDX46Q7L014 1031 aaKnown RBP23.62■■□□□ 1.37
PTCD3-204ENST00000418628 TTLL11Q8NHH1 800 aa23.62■■□□□ 1.37
PTCD3-204ENST00000418628 PPEF1O14829 653 aaPredicted RBP23.61■■□□□ 1.37
PTCD3-204ENST00000418628 CCDC152Q4G0S7 254 aa23.61■■□□□ 1.37
PTCD3-204ENST00000418628 CCDC93Q567U6 631 aa23.61■■□□□ 1.37
PTCD3-204ENST00000418628 OLFM4Q6UX06 510 aa23.61■■□□□ 1.37
PTCD3-204ENST00000418628 ARHGAP27Q6ZUM4 889 aa23.61■■□□□ 1.37
PTCD3-204ENST00000418628 CSF1RP07333 972 aa23.6■■□□□ 1.37
PTCD3-204ENST00000418628 RASSF7Q02833 373 aa23.6■■□□□ 1.37
PTCD3-204ENST00000418628 CC2D2BQ6DHV5 1058 aa23.6■■□□□ 1.37
PTCD3-204ENST00000418628 ATF7IPQ6VMQ6 1270 aa23.6■■□□□ 1.37
PTCD3-204ENST00000418628 CELF1Q92879 486 aaKnown RBP23.6■■□□□ 1.37
PTCD3-204ENST00000418628 COL4A5P29400 1685 aa23.6■■□□□ 1.37
PTCD3-204ENST00000418628 BBOX1O75936 387 aa23.59■■□□□ 1.37
PTCD3-204ENST00000418628 CCT4P50991 539 aaKnown RBP23.59■■□□□ 1.37
PTCD3-204ENST00000418628 FOXO4P98177 505 aa23.59■■□□□ 1.37
PTCD3-204ENST00000418628 TMC4Q7Z404 712 aa23.59■■□□□ 1.37
PTCD3-204ENST00000418628 KAZALD1Q96I82 304 aa23.59■■□□□ 1.37
PTCD3-204ENST00000418628 ZNF219Q9P2Y4 722 aaPredicted RBP23.59■■□□□ 1.37
PTCD3-204ENST00000418628 ATP6V0A2Q9Y487 856 aa23.59■■□□□ 1.37
PTCD3-204ENST00000418628 IPO8O15397 1037 aaKnown RBP23.58■■□□□ 1.37
PTCD3-204ENST00000418628 NBPF7P0C2Y1 421 aaPredicted RBP23.58■■□□□ 1.37
PTCD3-204ENST00000418628 INTS3Q68E01 1043 aaKnown RBP23.58■■□□□ 1.37
PTCD3-204ENST00000418628 USP44Q9H0E7 712 aa23.58■■□□□ 1.37
PTCD3-204ENST00000418628 SEC31BQ9NQW1 1179 aa23.58■■□□□ 1.37
PTCD3-204ENST00000418628 TNNQ9UQP3 1299 aa23.58■■□□□ 1.37
PTCD3-204ENST00000418628 ZNF646O15015 1829 aaPredicted RBP23.58■■□□□ 1.37
PTCD3-204ENST00000418628 EPHA10Q5JZY3 1008 aa23.57■■□□□ 1.36
PTCD3-204ENST00000418628 TAOK3Q9H2K8 898 aa23.57■■□□□ 1.36
PTCD3-204ENST00000418628 GREM2Q9H772 168 aa23.57■■□□□ 1.36
PTCD3-204ENST00000418628 C9orf78Q9NZ63 289 aaPredicted RBP23.57■■□□□ 1.36
PTCD3-204ENST00000418628 GRIPAP1Q4V328 841 aa23.56■■□□□ 1.36
PTCD3-204ENST00000418628 ZKSCAN2Q63HK3 967 aa23.56■■□□□ 1.36
PTCD3-204ENST00000418628 SP8Q8IXZ3 490 aa23.56■■□□□ 1.36
PTCD3-204ENST00000418628 PSMD1Q99460 953 aa23.56■■□□□ 1.36
PTCD3-204ENST00000418628 FKBP4Q02790 459 aaKnown RBP eCLIP23.55■■□□□ 1.36
PTCD3-204ENST00000418628 RTKN2Q8IZC4 609 aa23.55■■□□□ 1.36
PTCD3-204ENST00000418628 SUCLG2Q96I99 432 aa23.55■■□□□ 1.36
PTCD3-204ENST00000418628 LMNB1P20700 586 aa23.54■■□□□ 1.36
PTCD3-204ENST00000418628 FAM161AQ3B820 660 aa23.54■■□□□ 1.36
PTCD3-204ENST00000418628 RABL6Q3YEC7 729 aaPredicted RBP23.54■■□□□ 1.36
PTCD3-204ENST00000418628 SCN9AQ15858 1988 aa23.54■■□□□ 1.36
PTCD3-204ENST00000418628 ZC3H4Q9UPT8 1303 aaKnown RBP23.54■■□□□ 1.36
PTCD3-204ENST00000418628 YY1P25490 414 aa23.53■■□□□ 1.36
PTCD3-204ENST00000418628 RPS8P62241 208 aaKnown RBP23.53■■□□□ 1.36
PTCD3-204ENST00000418628 C9orf131Q5VYM1 1079 aa23.53■■□□□ 1.36
PTCD3-204ENST00000418628 FRAT1Q92837 279 aaPredicted RBP23.53■■□□□ 1.36
PTCD3-204ENST00000418628 YTHDC1Q96MU7 727 aaKnown RBP23.53■■□□□ 1.36
PTCD3-204ENST00000418628 CCDC85AQ96PX6 553 aaPredicted RBP23.53■■□□□ 1.36
PTCD3-204ENST00000418628 RCAN3Q9UKA8 241 aa23.53■■□□□ 1.36
PTCD3-204ENST00000418628 ANKRD44Q8N8A2 993 aa23.52■■□□□ 1.36
PTCD3-204ENST00000418628 RTFDC1Q9BY42 306 aaPredicted RBP23.52■■□□□ 1.36
PTCD3-204ENST00000418628 WDR90Q96KV7 1748 aa23.52■■□□□ 1.36
PTCD3-204ENST00000418628 ITGA6P23229 1130 aa23.51■■□□□ 1.35
PTCD3-204ENST00000418628 CDC5LQ99459 802 aaKnown RBP23.51■■□□□ 1.35
PTCD3-204ENST00000418628 RNF181Q9P0P0 153 aa23.5■■□□□ 1.35
PTCD3-204ENST00000418628 SCN4AP35499 1836 aa23.49■■□□□ 1.35
PTCD3-204ENST00000418628 RLBP1P12271 317 aa23.49■■□□□ 1.35
PTCD3-204ENST00000418628 LMBR1LQ6UX01 489 aa23.49■■□□□ 1.35
PTCD3-204ENST00000418628 ANKRD18AQ8IVF6 992 aa23.49■■□□□ 1.35
PTCD3-204ENST00000418628 BICC1Q9H694 974 aaKnown RBP23.49■■□□□ 1.35
PTCD3-204ENST00000418628 TMEM57Q8N5G2 664 aa23.48■■□□□ 1.35
PTCD3-204ENST00000418628 CLUAP1Q96AJ1 413 aa23.48■■□□□ 1.35
PTCD3-204ENST00000418628 MEIS3Q99687 375 aa23.48■■□□□ 1.35
PTCD3-204ENST00000418628 BSDC1Q9NW68 430 aaPredicted RBP23.48■■□□□ 1.35
PTCD3-204ENST00000418628 ZNF277Q9NRM2 450 aaPredicted RBP23.47■■□□□ 1.35
PTCD3-204ENST00000418628 PODXL2Q9NZ53 605 aa23.47■■□□□ 1.35
PTCD3-204ENST00000418628 IARSP41252 1262 aaKnown RBP23.46■■□□□ 1.35
PTCD3-204ENST00000418628 DZIP1LQ8IYY4 767 aaKnown RBP23.46■■□□□ 1.35
PTCD3-204ENST00000418628 MPNDQ8N594 471 aa23.46■■□□□ 1.35
PTCD3-204ENST00000418628 ARAP2Q8WZ64 1704 aa23.46■■□□□ 1.35
PTCD3-204ENST00000418628 MYH13Q9UKX3 1938 aa23.45■■□□□ 1.35
PTCD3-204ENST00000418628 ANKRD18BA2A2Z9 1011 aa23.45■■□□□ 1.34
PTCD3-204ENST00000418628 UBTFL1P0CB47 393 aaPredicted RBP23.45■■□□□ 1.34
PTCD3-204ENST00000418628 GPSM2P81274 684 aa23.45■■□□□ 1.34
PTCD3-204ENST00000418628 VPS33BQ9H267 617 aa23.45■■□□□ 1.34
PTCD3-204ENST00000418628 IFIT5Q13325 482 aaKnown RBP23.44■■□□□ 1.34
PTCD3-204ENST00000418628 DPP8Q6V1X1 898 aaPredicted RBP23.44■■□□□ 1.34
PTCD3-204ENST00000418628 ZNF784Q8NCA9 323 aaPredicted RBP23.43■■□□□ 1.34
PTCD3-204ENST00000418628 TMX4Q9H1E5 349 aaPredicted RBP23.43■■□□□ 1.34
PTCD3-204ENST00000418628 MINPP1Q9UNW1 487 aa23.43■■□□□ 1.34
PTCD3-204ENST00000418628 XDHP47989 1333 aa23.42■■□□□ 1.34
PTCD3-204ENST00000418628 GNAI3P08754 354 aa23.42■■□□□ 1.34
PTCD3-204ENST00000418628 IGHMBP2P38935 993 aaKnown RBP23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms