RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 CARMIL3Q8ND23 1372 aa19.25■□□□□ 0.67
SHMT2-202ENST00000414700 SURF6O75683 361 aaKnown RBP19.25■□□□□ 0.67
SHMT2-202ENST00000414700 TM4SF1P30408 202 aa19.25■□□□□ 0.67
SHMT2-202ENST00000414700 RFX5P48382 616 aaPredicted RBP19.25■□□□□ 0.67
SHMT2-202ENST00000414700 DDR1Q08345 913 aa19.25■□□□□ 0.67
SHMT2-202ENST00000414700 FAM161AQ3B820 660 aa19.25■□□□□ 0.67
SHMT2-202ENST00000414700 MSL1Q68DK7 614 aa19.25■□□□□ 0.67
SHMT2-202ENST00000414700 TTLL11Q8NHH1 800 aa19.25■□□□□ 0.67
SHMT2-202ENST00000414700 PDE8AO60658 829 aa19.24■□□□□ 0.67
SHMT2-202ENST00000414700 CSF1RP07333 972 aa19.24■□□□□ 0.67
SHMT2-202ENST00000414700 CTSWP56202 376 aa19.24■□□□□ 0.67
SHMT2-202ENST00000414700 ANKRD45Q5TZF3 282 aa19.24■□□□□ 0.67
SHMT2-202ENST00000414700 NUCB1Q02818 461 aa19.24■□□□□ 0.67
SHMT2-202ENST00000414700 C3orf67Q6ZVT6 689 aa19.24■□□□□ 0.67
SHMT2-202ENST00000414700 LNPKQ9C0E8 428 aa19.24■□□□□ 0.67
SHMT2-202ENST00000414700 SIL1Q9H173 461 aa19.24■□□□□ 0.67
SHMT2-202ENST00000414700 SMARCA5O60264 1052 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-202ENST00000414700 GTF2E1P29083 439 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-202ENST00000414700 PTPN12Q05209 780 aaKnown RBP19.23■□□□□ 0.67
SHMT2-202ENST00000414700 GREM2Q9H772 168 aa19.23■□□□□ 0.67
SHMT2-202ENST00000414700 TPTE2Q6XPS3 522 aa19.22■□□□□ 0.67
SHMT2-202ENST00000414700 ZNF594Q96JF6 807 aaPredicted RBP19.22■□□□□ 0.67
SHMT2-202ENST00000414700 TAF1P21675 1872 aa19.22■□□□□ 0.67
SHMT2-202ENST00000414700 POLRMTO00411 1230 aaKnown RBP19.22■□□□□ 0.67
SHMT2-202ENST00000414700 CHD1LQ86WJ1 897 aa19.22■□□□□ 0.67
SHMT2-202ENST00000414700 NYXQ9GZU5 481 aa19.22■□□□□ 0.67
SHMT2-202ENST00000414700 SRCAPQ6ZRS2 3230 aa19.21■□□□□ 0.67
SHMT2-202ENST00000414700 PDE4AP27815 886 aa19.21■□□□□ 0.67
SHMT2-202ENST00000414700 RGS3P49796 1198 aa19.21■□□□□ 0.67
SHMT2-202ENST00000414700 NLGN1Q8N2Q7 840 aa19.21■□□□□ 0.67
SHMT2-202ENST00000414700 TNRC6CQ9HCJ0 1690 aaKnown RBP19.21■□□□□ 0.67
SHMT2-202ENST00000414700 SERPINB2P05120 415 aa19.2■□□□□ 0.66
SHMT2-202ENST00000414700 PRR5LQ6MZQ0 368 aa19.2■□□□□ 0.66
SHMT2-202ENST00000414700 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.2■□□□□ 0.66
SHMT2-202ENST00000414700 COL4A1P02462 1669 aa19.2■□□□□ 0.66
SHMT2-202ENST00000414700 NPHP1O15259 732 aa19.2■□□□□ 0.66
SHMT2-202ENST00000414700 CNBD1Q8NA66 436 aa19.2■□□□□ 0.66
SHMT2-202ENST00000414700 COPRSQ9NQ92 184 aa19.2■□□□□ 0.66
SHMT2-202ENST00000414700 ITGA6P23229 1130 aa19.19■□□□□ 0.66
SHMT2-202ENST00000414700 CCDC57Q2TAC2 916 aa19.19■□□□□ 0.66
SHMT2-202ENST00000414700 RTN4Q9NQC3 1192 aaKnown RBP19.19■□□□□ 0.66
SHMT2-202ENST00000414700 MMP10P09238 476 aa19.18■□□□□ 0.66
SHMT2-202ENST00000414700 SLC10A5Q5PT55 438 aa19.18■□□□□ 0.66
SHMT2-202ENST00000414700 C16orf71Q8IYS4 520 aaPredicted RBP19.18■□□□□ 0.66
SHMT2-202ENST00000414700 IL1RAPL2Q9NP60 686 aa19.18■□□□□ 0.66
SHMT2-202ENST00000414700 SEC31BQ9NQW1 1179 aa19.18■□□□□ 0.66
SHMT2-202ENST00000414700 IFIT5Q13325 482 aaKnown RBP19.18■□□□□ 0.66
SHMT2-202ENST00000414700 SASH1O94885 1247 aa19.17■□□□□ 0.66
SHMT2-202ENST00000414700 OS9Q13438 667 aaPredicted RBP19.17■□□□□ 0.66
SHMT2-202ENST00000414700 OTUD7AQ8TE49 926 aaPredicted RBP19.17■□□□□ 0.66
SHMT2-202ENST00000414700 UBE2Q2Q8WVN8 375 aa19.17■□□□□ 0.66
SHMT2-202ENST00000414700 PUS3Q9BZE2 481 aaKnown RBP19.17■□□□□ 0.66
SHMT2-202ENST00000414700 LRRCC1Q9C099 1032 aa19.17■□□□□ 0.66
SHMT2-202ENST00000414700 LRRC24Q50LG9 513 aa19.17■□□□□ 0.66
SHMT2-202ENST00000414700 RHPN1Q8TCX5 695 aa19.17■□□□□ 0.66
SHMT2-202ENST00000414700 SPEF2Q9C093 1822 aa19.17■□□□□ 0.66
SHMT2-202ENST00000414700 NRXN2Q9P2S2 1712 aa19.16■□□□□ 0.66
SHMT2-202ENST00000414700 G3BP1Q13283 466 aaKnown RBP eCLIP19.15■□□□□ 0.662e-7■■■□□ 18
SHMT2-202ENST00000414700 CCDC152Q4G0S7 254 aa19.15■□□□□ 0.66
SHMT2-202ENST00000414700 ATG9AQ7Z3C6 839 aa19.15■□□□□ 0.66
SHMT2-202ENST00000414700 RAB11FIP3O75154 756 aa19.15■□□□□ 0.66
SHMT2-202ENST00000414700 SF3B3Q15393 1217 aaKnown RBP19.15■□□□□ 0.66
SHMT2-202ENST00000414700 NLRP3Q96P20 1036 aa19.15■□□□□ 0.66
SHMT2-202ENST00000414700 ANKRD31Q8N7Z5 1873 aa19.15■□□□□ 0.66
SHMT2-202ENST00000414700 ANKRD18BA2A2Z9 1011 aa19.14■□□□□ 0.65
SHMT2-202ENST00000414700 HSP90B1P14625 803 aaKnown RBP19.14■□□□□ 0.65
SHMT2-202ENST00000414700 KIF1BPQ96EK5 621 aa19.14■□□□□ 0.65
SHMT2-202ENST00000414700 R3HDM1Q15032 1099 aaKnown RBP19.13■□□□□ 0.65
SHMT2-202ENST00000414700 HSP90AB4PQ58FF6 505 aa19.13■□□□□ 0.65
SHMT2-202ENST00000414700 TAF7LQ5H9L4 462 aa19.13■□□□□ 0.65
SHMT2-202ENST00000414700 EYA2O00167 538 aa19.13■□□□□ 0.65
SHMT2-202ENST00000414700 ST5P78524 1137 aa19.12■□□□□ 0.65
SHMT2-202ENST00000414700 PARP3Q9Y6F1 533 aa19.12■□□□□ 0.65
SHMT2-202ENST00000414700 TFCP2Q12800 502 aa19.12■□□□□ 0.65
SHMT2-202ENST00000414700 LDHAL6AQ6ZMR3 332 aa19.12■□□□□ 0.65
SHMT2-202ENST00000414700 RTL9Q8NET4 1388 aa19.11■□□□□ 0.65
SHMT2-202ENST00000414700 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.11■□□□□ 0.65
SHMT2-202ENST00000414700 LRP5O75197 1615 aa19.11■□□□□ 0.65
SHMT2-202ENST00000414700 PSDA5PKW4 1024 aaPredicted RBP19.1■□□□□ 0.65
SHMT2-202ENST00000414700 ERC1Q8IUD2 1116 aa19.1■□□□□ 0.65
SHMT2-202ENST00000414700 CELF1Q92879 486 aaKnown RBP19.1■□□□□ 0.65
SHMT2-202ENST00000414700 RIC1Q4ADV7 1423 aa19.1■□□□□ 0.65
SHMT2-202ENST00000414700 ZBTB7AO95365 584 aa19.1■□□□□ 0.65
SHMT2-202ENST00000414700 TSHZ3Q63HK5 1081 aa19.1■□□□□ 0.65
SHMT2-202ENST00000414700 PLEKHM2Q8IWE5 1019 aa19.1■□□□□ 0.65
SHMT2-202ENST00000414700 RIPOR2Q9Y4F9 1068 aa19.1■□□□□ 0.65
SHMT2-202ENST00000414700 SALL3Q9BXA9 1300 aa19.09■□□□□ 0.65
SHMT2-202ENST00000414700 CIAO1O76071 339 aa19.09■□□□□ 0.65
SHMT2-202ENST00000414700 EAF2Q96CJ1 260 aaPredicted RBP19.09■□□□□ 0.65
SHMT2-202ENST00000414700 IL15P40933 162 aaPredicted RBP19.08■□□□□ 0.65
SHMT2-202ENST00000414700 CRY2Q49AN0 593 aa19.08■□□□□ 0.65
SHMT2-202ENST00000414700 SLC51AQ86UW1 340 aa19.08■□□□□ 0.65
SHMT2-202ENST00000414700 CNNM1Q9NRU3 951 aa19.08■□□□□ 0.65
SHMT2-202ENST00000414700 SLC16A10Q8TF71 515 aa19.08■□□□□ 0.64
SHMT2-202ENST00000414700 CLASRPQ8N2M8 674 aaKnown RBP19.07■□□□□ 0.64
SHMT2-202ENST00000414700 TLR7Q9NYK1 1049 aaKnown RBP19.07■□□□□ 0.64
SHMT2-202ENST00000414700 COL11A2P13942 1736 aaPredicted RBP19.07■□□□□ 0.64
SHMT2-202ENST00000414700 AACSQ86V21 672 aa19.07■□□□□ 0.64
SHMT2-202ENST00000414700 CDC5LQ99459 802 aaKnown RBP19.07■□□□□ 0.64
SHMT2-202ENST00000414700 MPHOSPH8Q99549 860 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms