RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 GRAPLQ8TC17 118 aaPredicted RBP18.94■□□□□ 0.62
LIMS4-201ENST00000413601 CDCA7LQ96GN5 454 aa18.94■□□□□ 0.62
LIMS4-201ENST00000413601 PSMD1Q99460 953 aa18.94■□□□□ 0.62
LIMS4-201ENST00000413601 LRRC37AA6NMS7 1700 aa18.94■□□□□ 0.62
LIMS4-201ENST00000413601 WDR90Q96KV7 1748 aa18.94■□□□□ 0.62
LIMS4-201ENST00000413601 NEURL1BA8MQ27 555 aa18.93■□□□□ 0.62
LIMS4-201ENST00000413601 IARSP41252 1262 aaKnown RBP18.93■□□□□ 0.62
LIMS4-201ENST00000413601 GRIPAP1Q4V328 841 aa18.93■□□□□ 0.62
LIMS4-201ENST00000413601 DPY19L2Q6NUT2 758 aa18.93■□□□□ 0.62
LIMS4-201ENST00000413601 TMX4Q9H1E5 349 aaPredicted RBP18.93■□□□□ 0.62
LIMS4-201ENST00000413601 SPEF2Q9C093 1822 aa18.93■□□□□ 0.62
LIMS4-201ENST00000413601 HSP90B1P14625 803 aaKnown RBP18.92■□□□□ 0.62
LIMS4-201ENST00000413601 SP8Q8IXZ3 490 aa18.92■□□□□ 0.62
LIMS4-201ENST00000413601 DNAAF4Q8WXU2 420 aa18.92■□□□□ 0.62
LIMS4-201ENST00000413601 F6X3S4 739 aa18.91■□□□□ 0.62
LIMS4-201ENST00000413601 PDE8AO60658 829 aa18.91■□□□□ 0.62
LIMS4-201ENST00000413601 CELF1Q92879 486 aaKnown RBP18.91■□□□□ 0.62
LIMS4-201ENST00000413601 CDHR2Q9BYE9 1310 aa18.91■□□□□ 0.62
LIMS4-201ENST00000413601 COL4A5P29400 1685 aa18.91■□□□□ 0.62
LIMS4-201ENST00000413601 TOMM70O94826 608 aa18.89■□□□□ 0.61
LIMS4-201ENST00000413601 DDNO94850 711 aaPredicted RBP18.89■□□□□ 0.61
LIMS4-201ENST00000413601 GCKRQ14397 625 aa18.89■□□□□ 0.61
LIMS4-201ENST00000413601 UBE3BQ7Z3V4 1068 aa18.89■□□□□ 0.61
LIMS4-201ENST00000413601 C16orf71Q8IYS4 520 aaPredicted RBP18.89■□□□□ 0.61
LIMS4-201ENST00000413601 CCDC85AQ96PX6 553 aaPredicted RBP18.89■□□□□ 0.61
LIMS4-201ENST00000413601 SEC31BQ9NQW1 1179 aa18.89■□□□□ 0.61
LIMS4-201ENST00000413601 H7C1W4 665 aa18.88■□□□□ 0.61
LIMS4-201ENST00000413601 VEGFAP15692 232 aaPredicted RBP18.88■□□□□ 0.61
LIMS4-201ENST00000413601 CCDC152Q4G0S7 254 aa18.88■□□□□ 0.61
LIMS4-201ENST00000413601 DPP8Q6V1X1 898 aaPredicted RBP18.88■□□□□ 0.61
LIMS4-201ENST00000413601 TMC4Q7Z404 712 aa18.88■□□□□ 0.61
LIMS4-201ENST00000413601 MPNDQ8N594 471 aa18.88■□□□□ 0.61
LIMS4-201ENST00000413601 LINS1Q8NG48 757 aa18.88■□□□□ 0.61
LIMS4-201ENST00000413601 JDP2Q8WYK2 163 aa18.88■□□□□ 0.61
LIMS4-201ENST00000413601 SCN4AP35499 1836 aa18.88■□□□□ 0.61
LIMS4-201ENST00000413601 POTECB2RU33 542 aa18.87■□□□□ 0.61
LIMS4-201ENST00000413601 RPS8P62241 208 aaKnown RBP18.87■□□□□ 0.61
LIMS4-201ENST00000413601 TRMT2AQ8IZ69 625 aaKnown RBP18.87■□□□□ 0.61
LIMS4-201ENST00000413601 LARGE2Q8N3Y3 721 aa18.87■□□□□ 0.61
LIMS4-201ENST00000413601 ZNF541Q9H0D2 1346 aa18.87■□□□□ 0.61
LIMS4-201ENST00000413601 LTBP1Q14766 1721 aa18.86■□□□□ 0.61
LIMS4-201ENST00000413601 DUOX1Q9NRD9 1551 aa18.86■□□□□ 0.61
LIMS4-201ENST00000413601 FZD9O00144 591 aa18.86■□□□□ 0.61
LIMS4-201ENST00000413601 CTSWP56202 376 aa18.86■□□□□ 0.61
LIMS4-201ENST00000413601 RTFDC1Q9BY42 306 aaPredicted RBP18.86■□□□□ 0.61
LIMS4-201ENST00000413601 PPIP5K2O43314 1243 aa18.85■□□□□ 0.61
LIMS4-201ENST00000413601 AOC3Q16853 763 aa18.85■□□□□ 0.61
LIMS4-201ENST00000413601 BEND3Q5T5X7 828 aa18.85■□□□□ 0.61
LIMS4-201ENST00000413601 MRPL50Q8N5N7 158 aaKnown RBP18.85■□□□□ 0.61
LIMS4-201ENST00000413601 SUPT20HQ8NEM7 779 aa18.85■□□□□ 0.61
LIMS4-201ENST00000413601 TTLL11Q8NHH1 800 aa18.85■□□□□ 0.61
LIMS4-201ENST00000413601 CASP7P55210 303 aa18.84■□□□□ 0.61
LIMS4-201ENST00000413601 RBM46Q8TBY0 533 aaKnown RBP18.84■□□□□ 0.61
LIMS4-201ENST00000413601 SSH1Q8WYL5 1049 aa18.84■□□□□ 0.61
LIMS4-201ENST00000413601 NSFL1CQ9UNZ2 370 aaKnown RBP18.84■□□□□ 0.61
LIMS4-201ENST00000413601 GPSM2P81274 684 aa18.83■□□□□ 0.6
LIMS4-201ENST00000413601 SLC4A10Q6U841 1118 aa18.83■□□□□ 0.6
LIMS4-201ENST00000413601 NIM1KQ8IY84 436 aa18.83■□□□□ 0.6
LIMS4-201ENST00000413601 BCL2L13Q9BXK5 485 aa18.83■□□□□ 0.6
LIMS4-201ENST00000413601 VPS33BQ9H267 617 aa18.83■□□□□ 0.6
LIMS4-201ENST00000413601 EIF6P56537 245 aaKnown RBP18.82■□□□□ 0.6
LIMS4-201ENST00000413601 ANKRD18AQ8IVF6 992 aa18.82■□□□□ 0.6
LIMS4-201ENST00000413601 PLA2G12BQ9BX93 195 aa18.82■□□□□ 0.6
LIMS4-201ENST00000413601 GREM2Q9H772 168 aa18.82■□□□□ 0.6
LIMS4-201ENST00000413601 KIAA2012Q0VF49 1180 aa18.81■□□□□ 0.6
LIMS4-201ENST00000413601 L3MBTL3Q96JM7 780 aaPredicted RBP18.81■□□□□ 0.6
LIMS4-201ENST00000413601 C6orf229H3BNL8 230 aa18.8■□□□□ 0.6
LIMS4-201ENST00000413601 HSPA6P17066 643 aa18.8■□□□□ 0.6
LIMS4-201ENST00000413601 GPC2Q8N158 579 aa18.8■□□□□ 0.6
LIMS4-201ENST00000413601 SRCIN1Q9C0H9 1055 aa18.8■□□□□ 0.6
LIMS4-201ENST00000413601 POLLQ9UGP5 575 aa18.8■□□□□ 0.6
LIMS4-201ENST00000413601 GJA3Q9Y6H8 435 aa18.8■□□□□ 0.6
LIMS4-201ENST00000413601 RTL9Q8NET4 1388 aa18.8■□□□□ 0.6
LIMS4-201ENST00000413601 HNRNPUQ00839 825 aaKnown RBP eCLIP18.79■□□□□ 0.6
LIMS4-201ENST00000413601 ALDH1L2Q3SY69 923 aa18.79■□□□□ 0.6
LIMS4-201ENST00000413601 CDC5LQ99459 802 aaKnown RBP18.79■□□□□ 0.6
LIMS4-201ENST00000413601 SMC4Q9NTJ3 1288 aa18.79■□□□□ 0.6
LIMS4-201ENST00000413601 ZNRF3Q9ULT6 936 aa18.79■□□□□ 0.6
LIMS4-201ENST00000413601 PTPRCP08575 1304 aa18.78■□□□□ 0.6
LIMS4-201ENST00000413601 IQCA1LA6NCM1 817 aa18.78■□□□□ 0.6
LIMS4-201ENST00000413601 GRM8O00222 908 aa18.78■□□□□ 0.6
LIMS4-201ENST00000413601 RIMBP2O15034 1052 aa18.78■□□□□ 0.6
LIMS4-201ENST00000413601 ALDH1L1O75891 902 aa18.78■□□□□ 0.6
LIMS4-201ENST00000413601 CSF1RP07333 972 aa18.78■□□□□ 0.6
LIMS4-201ENST00000413601 FSTL1Q12841 308 aa18.78■□□□□ 0.6
LIMS4-201ENST00000413601 WASHC4Q2M389 1173 aa18.78■□□□□ 0.6
LIMS4-201ENST00000413601 SMC1BQ8NDV3 1235 aa18.78■□□□□ 0.6
LIMS4-201ENST00000413601 TBC1D16Q8TBP0 767 aa18.78■□□□□ 0.6
LIMS4-201ENST00000413601 C9orf78Q9NZ63 289 aaPredicted RBP18.78■□□□□ 0.6
LIMS4-201ENST00000413601 ANKIB1Q9P2G1 1089 aa18.78■□□□□ 0.6
LIMS4-201ENST00000413601 CT47B1P0C2W7 299 aaPredicted RBP18.77■□□□□ 0.6
LIMS4-201ENST00000413601 ITGA6P23229 1130 aa18.77■□□□□ 0.6
LIMS4-201ENST00000413601 FOXO4P98177 505 aa18.77■□□□□ 0.6
LIMS4-201ENST00000413601 FAM161AQ3B820 660 aa18.77■□□□□ 0.6
LIMS4-201ENST00000413601 GPR101Q96P66 508 aaPredicted RBP18.77■□□□□ 0.6
LIMS4-201ENST00000413601 TAF1DQ9H5J8 278 aaPredicted RBP18.77■□□□□ 0.6
LIMS4-201ENST00000413601 PODXL2Q9NZ53 605 aa18.77■□□□□ 0.6
LIMS4-201ENST00000413601 HACL1Q9UJ83 578 aa18.77■□□□□ 0.6
LIMS4-201ENST00000413601 POTEIP0CG38 1075 aa18.76■□□□□ 0.59
LIMS4-201ENST00000413601 POTEJP0CG39 1038 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms