RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 PTPN12Q05209 780 aaKnown RBP8.22□□□□□ -1.09
VPS41-204ENST00000413141 OS9Q13438 667 aaPredicted RBP8.22□□□□□ -1.09
VPS41-204ENST00000413141 FAM161AQ3B820 660 aa8.22□□□□□ -1.09
VPS41-204ENST00000413141 SAMD1Q6SPF0 538 aaPredicted RBP8.22□□□□□ -1.09
VPS41-204ENST00000413141 ERC1Q8IUD2 1116 aa8.22□□□□□ -1.09
VPS41-204ENST00000413141 KLHDC4Q8TBB5 520 aa8.22□□□□□ -1.09
VPS41-204ENST00000413141 OTUD7AQ8TE49 926 aaPredicted RBP8.22□□□□□ -1.09
VPS41-204ENST00000413141 CHMP3Q9Y3E7 222 aa8.22□□□□□ -1.09
VPS41-204ENST00000413141 FAM177BA6PVY3 158 aa8.21□□□□□ -1.1
VPS41-204ENST00000413141 GYS1P13807 737 aa8.21□□□□□ -1.1
VPS41-204ENST00000413141 BICDL1Q6ZP65 573 aa8.21□□□□□ -1.1
VPS41-204ENST00000413141 NUTM1Q86Y26 1132 aa8.21□□□□□ -1.1
VPS41-204ENST00000413141 PLEKHM2Q8IWE5 1019 aa8.21□□□□□ -1.1
VPS41-204ENST00000413141 C16orf71Q8IYS4 520 aaPredicted RBP8.21□□□□□ -1.1
VPS41-204ENST00000413141 CAMKK2Q96RR4 588 aa8.21□□□□□ -1.1
VPS41-204ENST00000413141 SIL1Q9H173 461 aa8.21□□□□□ -1.1
VPS41-204ENST00000413141 IL1RAPL2Q9NP60 686 aa8.21□□□□□ -1.1
VPS41-204ENST00000413141 TSHZ2Q9NRE2 1034 aa8.21□□□□□ -1.1
VPS41-204ENST00000413141 RTL9Q8NET4 1388 aa8.21□□□□□ -1.1
VPS41-204ENST00000413141 RIC1Q4ADV7 1423 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 SASH1O94885 1247 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 HCLS1P14317 486 aaPredicted RBP8.2□□□□□ -1.1
VPS41-204ENST00000413141 HSP90B1P14625 803 aaKnown RBP8.2□□□□□ -1.1
VPS41-204ENST00000413141 EN1Q05925 392 aaPredicted RBP8.2□□□□□ -1.1
VPS41-204ENST00000413141 G3BP1Q13283 466 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS41-204ENST00000413141 EZH2Q15910 746 aaKnown RBP8.2□□□□□ -1.1
VPS41-204ENST00000413141 CCDC57Q2TAC2 916 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 C8orf34Q49A92 452 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 ERFEQ4G0M1 354 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 BMP2KLQ5H9B9 411 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 TTLL11Q8NHH1 800 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 CCDC85AQ96PX6 553 aaPredicted RBP8.2□□□□□ -1.1
VPS41-204ENST00000413141 SETDB2Q96T68 719 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 NYXQ9GZU5 481 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 GREM2Q9H772 168 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 TFCP2L1Q9NZI6 479 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 AOX1Q06278 1338 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 PNPLA7Q6ZV29 1317 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 COL4A1P02462 1669 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 NRXN2Q9P2S2 1712 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 ZNF609O15014 1411 aa8.2□□□□□ -1.1
VPS41-204ENST00000413141 SPEF2Q9C093 1822 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 EYA2O00167 538 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 CIAO1O76071 339 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 GSPT1P15170 499 aaKnown RBP8.19□□□□□ -1.1
VPS41-204ENST00000413141 MX1P20591 662 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 ITGA6P23229 1130 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 BAG6P46379 1132 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 PDE1AP54750 535 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 IFIT5Q13325 482 aaKnown RBP8.19□□□□□ -1.1
VPS41-204ENST00000413141 SF3B2Q13435 895 aaKnown RBP8.19□□□□□ -1.1
VPS41-204ENST00000413141 NFIXQ14938 502 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 TTC22Q5TAA0 569 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 ATG9AQ7Z3C6 839 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 NBPF5PQ86XG9 351 aaPredicted RBP8.19□□□□□ -1.1
VPS41-204ENST00000413141 CLASRPQ8N2M8 674 aaKnown RBP8.19□□□□□ -1.1
VPS41-204ENST00000413141 ZNF594Q96JF6 807 aaPredicted RBP8.19□□□□□ -1.1
VPS41-204ENST00000413141 BCL11AQ9H165 835 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 OSBPL3Q9H4L5 887 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 ANO8Q9HCE9 1232 aaPredicted RBP8.19□□□□□ -1.1
VPS41-204ENST00000413141 FBXO3Q9UK99 471 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.19□□□□□ -1.1
VPS41-204ENST00000413141 A0A1B0GUL6 1792 aa8.19□□□□□ -1.1
VPS41-204ENST00000413141 ARAP2Q8WZ64 1704 aa8.18□□□□□ -1.1
VPS41-204ENST00000413141 ANKRD18BA2A2Z9 1011 aa8.18□□□□□ -1.1
VPS41-204ENST00000413141 IL15P40933 162 aaPredicted RBP8.18□□□□□ -1.1
VPS41-204ENST00000413141 TFCP2Q12800 502 aa8.18□□□□□ -1.1
VPS41-204ENST00000413141 CCDC152Q4G0S7 254 aa8.18□□□□□ -1.1
VPS41-204ENST00000413141 LRRC24Q50LG9 513 aa8.18□□□□□ -1.1
VPS41-204ENST00000413141 TAF7LQ5H9L4 462 aa8.18□□□□□ -1.1
VPS41-204ENST00000413141 SLC10A5Q5PT55 438 aa8.18□□□□□ -1.1
VPS41-204ENST00000413141 C3orf67Q6ZVT6 689 aa8.18□□□□□ -1.1
VPS41-204ENST00000413141 COL23A1Q86Y22 540 aaPredicted RBP8.18□□□□□ -1.1
VPS41-204ENST00000413141 FLAD1Q8NFF5 587 aa8.18□□□□□ -1.1
VPS41-204ENST00000413141 BACH2Q9BYV9 841 aa8.18□□□□□ -1.1
VPS41-204ENST00000413141 STAP2Q9UGK3 403 aa8.18□□□□□ -1.1
VPS41-204ENST00000413141 GTF2E1P29083 439 aaPredicted RBP8.17□□□□□ -1.1
VPS41-204ENST00000413141 TM4SF1P30408 202 aa8.17□□□□□ -1.1
VPS41-204ENST00000413141 DDR1Q08345 913 aa8.17□□□□□ -1.1
VPS41-204ENST00000413141 SF3B3Q15393 1217 aaKnown RBP8.17□□□□□ -1.1
VPS41-204ENST00000413141 SLC15A2Q16348 729 aa8.17□□□□□ -1.1
VPS41-204ENST00000413141 TNNI3KQ59H18 835 aa8.17□□□□□ -1.1
VPS41-204ENST00000413141 TSHZ3Q63HK5 1081 aa8.17□□□□□ -1.1
VPS41-204ENST00000413141 PRR5LQ6MZQ0 368 aa8.17□□□□□ -1.1
VPS41-204ENST00000413141 TPTE2Q6XPS3 522 aa8.17□□□□□ -1.1
VPS41-204ENST00000413141 DEFB132Q7Z7B7 95 aa8.17□□□□□ -1.1
VPS41-204ENST00000413141 AACSQ86V21 672 aa8.17□□□□□ -1.1
VPS41-204ENST00000413141 CNBD1Q8NA66 436 aa8.17□□□□□ -1.1
VPS41-204ENST00000413141 EAF2Q96CJ1 260 aaPredicted RBP8.17□□□□□ -1.1
VPS41-204ENST00000413141 PUS3Q9BZE2 481 aaKnown RBP8.17□□□□□ -1.1
VPS41-204ENST00000413141 STK32BQ9NY57 414 aa8.17□□□□□ -1.1
VPS41-204ENST00000413141 TLR7Q9NYK1 1049 aaKnown RBP8.17□□□□□ -1.1
VPS41-204ENST00000413141 FPGT-TNNI3KV9GXZ4 949 aa8.17□□□□□ -1.1
VPS41-204ENST00000413141 TTC41PQ6P2S7 1318 aa8.17□□□□□ -1.1
VPS41-204ENST00000413141 POLRMTO00411 1230 aaKnown RBP8.16□□□□□ -1.1
VPS41-204ENST00000413141 IFIT2P09913 472 aaKnown RBP8.16□□□□□ -1.1
VPS41-204ENST00000413141 ANKRD31Q8N7Z5 1873 aa8.16□□□□□ -1.1
VPS41-204ENST00000413141 PI4K2BQ8TCG2 481 aa8.16□□□□□ -1.1
VPS41-204ENST00000413141 GPATCH3Q96I76 525 aa8.16□□□□□ -1.1
VPS41-204ENST00000413141 GPR108Q9NPR9 543 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms