RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 MPNDQ8N594 471 aa28.82■■■□□ 2.2
MSH6-202ENST00000411819 LRRC37AA6NMS7 1700 aa28.81■■■□□ 2.2
MSH6-202ENST00000411819 CCDC30Q5VVM6 783 aa28.81■■■□□ 2.2
MSH6-202ENST00000411819 TSR2Q969E8 191 aaKnown RBP28.81■■■□□ 2.2
MSH6-202ENST00000411819 LTBP1Q14766 1721 aa28.8■■■□□ 2.2
MSH6-202ENST00000411819 MYD88Q99836 296 aa28.8■■■□□ 2.2
MSH6-202ENST00000411819 RTFDC1Q9BY42 306 aaPredicted RBP28.8■■■□□ 2.2
MSH6-202ENST00000411819 CHMP4AQ9BY43 222 aa28.8■■■□□ 2.2
MSH6-202ENST00000411819 VPS33BQ9H267 617 aa28.8■■■□□ 2.2
MSH6-202ENST00000411819 CREBZFQ9NS37 354 aa28.8■■■□□ 2.2
MSH6-202ENST00000411819 IRS4O14654 1257 aaPredicted RBP28.79■■■□□ 2.2
MSH6-202ENST00000411819 TRIM28Q13263 835 aaKnown RBP28.79■■■□□ 2.2
MSH6-202ENST00000411819 TMC4Q7Z404 712 aa28.78■■■□□ 2.2
MSH6-202ENST00000411819 TSPYL6Q8N831 410 aa28.78■■■□□ 2.2
MSH6-202ENST00000411819 PASKQ96RG2 1323 aa28.77■■■□□ 2.2
MSH6-202ENST00000411819 DUOX1Q9NRD9 1551 aa28.77■■■□□ 2.2
MSH6-202ENST00000411819 DDX58O95786 925 aaKnown RBP28.77■■■□□ 2.2
MSH6-202ENST00000411819 SF3B3Q15393 1217 aaKnown RBP28.77■■■□□ 2.2
MSH6-202ENST00000411819 CCDC27Q2M243 656 aa28.77■■■□□ 2.2
MSH6-202ENST00000411819 WWC1Q8IX03 1113 aa28.77■■■□□ 2.2
MSH6-202ENST00000411819 SCNN1DP51172 638 aa28.76■■■□□ 2.19
MSH6-202ENST00000411819 CELF1Q92879 486 aaKnown RBP28.76■■■□□ 2.19
MSH6-202ENST00000411819 ZNRF3Q9ULT6 936 aa28.76■■■□□ 2.19
MSH6-202ENST00000411819 COL4A1P02462 1669 aa28.75■■■□□ 2.19
MSH6-202ENST00000411819 KIAA2012Q0VF49 1180 aa28.75■■■□□ 2.19
MSH6-202ENST00000411819 IFFO2Q5TF58 517 aa28.75■■■□□ 2.19
MSH6-202ENST00000411819 MAP1SQ66K74 1059 aaPredicted RBP28.75■■■□□ 2.19
MSH6-202ENST00000411819 ZBTB38Q8NAP3 1195 aaPredicted RBP28.75■■■□□ 2.19
MSH6-202ENST00000411819 MKRN1Q9UHC7 482 aaKnown RBP28.75■■■□□ 2.19
MSH6-202ENST00000411819 EPS15P42566 896 aa28.74■■■□□ 2.19
MSH6-202ENST00000411819 STK31Q9BXU1 1019 aa28.74■■■□□ 2.19
MSH6-202ENST00000411819 ITGBL1O95965 494 aaPredicted RBP28.73■■■□□ 2.19
MSH6-202ENST00000411819 CCDC191Q8NCU4 936 aa28.73■■■□□ 2.19
MSH6-202ENST00000411819 HSP90B1P14625 803 aaKnown RBP28.72■■■□□ 2.19
MSH6-202ENST00000411819 CNTROBQ8N137 903 aa28.72■■■□□ 2.19
MSH6-202ENST00000411819 METTL22Q9BUU2 404 aaPredicted RBP28.72■■■□□ 2.19
MSH6-202ENST00000411819 CWC25Q9NXE8 425 aaPredicted RBP28.72■■■□□ 2.19
MSH6-202ENST00000411819 CXCL9Q07325 125 aa28.71■■■□□ 2.19
MSH6-202ENST00000411819 TWISTNBQ3B726 338 aaPredicted RBP28.71■■■□□ 2.19
MSH6-202ENST00000411819 NSFL1CQ9UNZ2 370 aaKnown RBP28.71■■■□□ 2.19
MSH6-202ENST00000411819 MAP3K2Q9Y2U5 619 aa28.71■■■□□ 2.19
MSH6-202ENST00000411819 TMEM88BA6NKF7 163 aa28.7■■■□□ 2.18
MSH6-202ENST00000411819 PCCAP05165 728 aaPredicted RBP28.7■■■□□ 2.18
MSH6-202ENST00000411819 CIAPIN1Q6FI81 312 aa28.7■■■□□ 2.18
MSH6-202ENST00000411819 SALL2Q9Y467 1007 aaPredicted RBP28.7■■■□□ 2.18
MSH6-202ENST00000411819 IL16Q14005 1332 aa28.69■■■□□ 2.18
MSH6-202ENST00000411819 RAD17O75943 681 aa28.69■■■□□ 2.18
MSH6-202ENST00000411819 JARID2Q92833 1246 aaPredicted RBP28.69■■■□□ 2.18
MSH6-202ENST00000411819 USP50Q70EL3 339 aaPredicted RBP28.68■■■□□ 2.18
MSH6-202ENST00000411819 GPRC5DQ9NZD1 345 aa28.68■■■□□ 2.18
MSH6-202ENST00000411819 CNTNAP1P78357 1384 aa28.67■■■□□ 2.18
MSH6-202ENST00000411819 PI4KAP2A4QPH2 592 aa28.67■■■□□ 2.18
MSH6-202ENST00000411819 C6orf229H3BNL8 230 aa28.67■■■□□ 2.18
MSH6-202ENST00000411819 HSPA1AP0DMV8 641 aaKnown RBP28.67■■■□□ 2.18
MSH6-202ENST00000411819 HSPA1BP0DMV9 641 aaKnown RBP28.67■■■□□ 2.18
MSH6-202ENST00000411819 GMPSP49915 693 aaPredicted RBP28.67■■■□□ 2.18
MSH6-202ENST00000411819 RPS8P62241 208 aaKnown RBP28.67■■■□□ 2.18
MSH6-202ENST00000411819 GPSM2P81274 684 aa28.67■■■□□ 2.18
MSH6-202ENST00000411819 WASHC4Q2M389 1173 aa28.67■■■□□ 2.18
MSH6-202ENST00000411819 KSR2Q6VAB6 950 aa28.67■■■□□ 2.18
MSH6-202ENST00000411819 PI4KAP1Q8N8J0 262 aa28.67■■■□□ 2.18
MSH6-202ENST00000411819 BCL2L13Q9BXK5 485 aa28.67■■■□□ 2.18
MSH6-202ENST00000411819 SEC31BQ9NQW1 1179 aa28.67■■■□□ 2.18
MSH6-202ENST00000411819 PDE8AO60658 829 aa28.66■■■□□ 2.18
MSH6-202ENST00000411819 TNIP1Q15025 636 aa28.66■■■□□ 2.18
MSH6-202ENST00000411819 CCDC152Q4G0S7 254 aa28.66■■■□□ 2.18
MSH6-202ENST00000411819 CCDC85AQ96PX6 553 aaPredicted RBP28.66■■■□□ 2.18
MSH6-202ENST00000411819 ADARB2Q9NS39 739 aaKnown RBP28.66■■■□□ 2.18
MSH6-202ENST00000411819 PCNTO95613 3336 aa28.66■■■□□ 2.18
MSH6-202ENST00000411819 RIMBP2O15034 1052 aa28.65■■■□□ 2.18
MSH6-202ENST00000411819 NEXNQ0ZGT2 675 aa28.65■■■□□ 2.18
MSH6-202ENST00000411819 NCBP3Q53F19 620 aaKnown RBP28.65■■■□□ 2.18
MSH6-202ENST00000411819 FANCIQ9NVI1 1328 aa28.65■■■□□ 2.18
MSH6-202ENST00000411819 YDJCA8MPS7 323 aa28.64■■■□□ 2.18
MSH6-202ENST00000411819 DBNDD1Q9H9R9 158 aa28.64■■■□□ 2.18
MSH6-202ENST00000411819 MYH3P11055 1940 aa28.63■■■□□ 2.17
MSH6-202ENST00000411819 SLC4A2P04920 1241 aa28.63■■■□□ 2.17
MSH6-202ENST00000411819 EYA3Q99504 573 aa28.63■■■□□ 2.17
MSH6-202ENST00000411819 POLLQ9UGP5 575 aa28.63■■■□□ 2.17
MSH6-202ENST00000411819 CDHR2Q9BYE9 1310 aa28.63■■■□□ 2.17
MSH6-202ENST00000411819 IGKV5-2P06315 115 aa28.62■■■□□ 2.17
MSH6-202ENST00000411819 G2E3Q7L622 706 aa28.62■■■□□ 2.17
MSH6-202ENST00000411819 GPR101Q96P66 508 aaPredicted RBP28.62■■■□□ 2.17
MSH6-202ENST00000411819 ABT1Q9ULW3 272 aaKnown RBP28.61■■■□□ 2.17
MSH6-202ENST00000411819 TRPM7Q96QT4 1865 aa28.6■■■□□ 2.17
MSH6-202ENST00000411819 CWF19L2Q2TBE0 894 aaKnown RBP28.6■■■□□ 2.17
MSH6-202ENST00000411819 TBC1D16Q8TBP0 767 aa28.6■■■□□ 2.17
MSH6-202ENST00000411819 ANKIB1Q9P2G1 1089 aa28.6■■■□□ 2.17
MSH6-202ENST00000411819 SPEF2Q9C093 1822 aa28.59■■■□□ 2.17
MSH6-202ENST00000411819 COL13A1Q5TAT6 717 aaPredicted RBP28.59■■■□□ 2.17
MSH6-202ENST00000411819 WDR63Q8IWG1 891 aa28.59■■■□□ 2.17
MSH6-202ENST00000411819 FAM9BQ8IZU0 186 aa28.59■■■□□ 2.17
MSH6-202ENST00000411819 CACNA1FO60840 1977 aa28.59■■■□□ 2.17
MSH6-202ENST00000411819 ECE2O60344 883 aa28.58■■■□□ 2.17
MSH6-202ENST00000411819 UFL1O94874 794 aa28.58■■■□□ 2.17
MSH6-202ENST00000411819 CTSWP56202 376 aa28.58■■■□□ 2.17
MSH6-202ENST00000411819 FMR1Q06787 632 aaKnown RBP eCLIP28.58■■■□□ 2.172e-6■■□□□ 12
MSH6-202ENST00000411819 FLIIQ13045 1269 aa28.58■■■□□ 2.17
MSH6-202ENST00000411819 DOK7Q18PE1 504 aa28.58■■■□□ 2.17
MSH6-202ENST00000411819 ANKRD18AQ8IVF6 992 aa28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms