RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 VEGFAP15692 232 aaPredicted RBP24.47■■□□□ 1.51
SF3A1-202ENST00000411423 CWF19L2Q2TBE0 894 aaKnown RBP24.47■■□□□ 1.51
SF3A1-202ENST00000411423 DPY19L2Q6NUT2 758 aa24.47■■□□□ 1.51
SF3A1-202ENST00000411423 LRRC37AA6NMS7 1700 aa24.47■■□□□ 1.51
SF3A1-202ENST00000411423 DUOX1Q9NRD9 1551 aa24.46■■□□□ 1.51
SF3A1-202ENST00000411423 FZD9O00144 591 aa24.46■■□□□ 1.51
SF3A1-202ENST00000411423 SP8Q8IXZ3 490 aa24.46■■□□□ 1.51
SF3A1-202ENST00000411423 MYH16Q9H6N6 1097 aa24.46■■□□□ 1.51
SF3A1-202ENST00000411423 C16orf71Q8IYS4 520 aaPredicted RBP24.45■■□□□ 1.5
SF3A1-202ENST00000411423 NEURL1BA8MQ27 555 aa24.44■■□□□ 1.5
SF3A1-202ENST00000411423 CCER2I3L3R5 266 aa24.44■■□□□ 1.5
SF3A1-202ENST00000411423 RTFDC1Q9BY42 306 aaPredicted RBP24.44■■□□□ 1.5
SF3A1-202ENST00000411423 SEC31BQ9NQW1 1179 aa24.44■■□□□ 1.5
SF3A1-202ENST00000411423 POTEIP0CG38 1075 aa24.42■■□□□ 1.5
SF3A1-202ENST00000411423 POTEJP0CG39 1038 aa24.42■■□□□ 1.5
SF3A1-202ENST00000411423 FKBP5Q13451 457 aaPredicted RBP24.42■■□□□ 1.5
SF3A1-202ENST00000411423 AOC3Q16853 763 aa24.42■■□□□ 1.5
SF3A1-202ENST00000411423 GRIPAP1Q4V328 841 aa24.42■■□□□ 1.5
SF3A1-202ENST00000411423 CCDC85AQ96PX6 553 aaPredicted RBP24.42■■□□□ 1.5
SF3A1-202ENST00000411423 CDHR2Q9BYE9 1310 aa24.41■■□□□ 1.5
SF3A1-202ENST00000411423 LARGE2Q8N3Y3 721 aa24.41■■□□□ 1.5
SF3A1-202ENST00000411423 L3MBTL3Q96JM7 780 aaPredicted RBP24.41■■□□□ 1.5
SF3A1-202ENST00000411423 CACNA1FO60840 1977 aa24.41■■□□□ 1.5
SF3A1-202ENST00000411423 F6X3S4 739 aa24.4■■□□□ 1.5
SF3A1-202ENST00000411423 PDE8AO60658 829 aa24.4■■□□□ 1.5
SF3A1-202ENST00000411423 DPP8Q6V1X1 898 aaPredicted RBP24.4■■□□□ 1.5
SF3A1-202ENST00000411423 MPNDQ8N594 471 aa24.4■■□□□ 1.5
SF3A1-202ENST00000411423 DNAAF4Q8WXU2 420 aa24.4■■□□□ 1.5
SF3A1-202ENST00000411423 LTBP1Q14766 1721 aa24.4■■□□□ 1.5
SF3A1-202ENST00000411423 PPIP5K2O43314 1243 aa24.39■■□□□ 1.49
SF3A1-202ENST00000411423 FSTL1Q12841 308 aa24.39■■□□□ 1.49
SF3A1-202ENST00000411423 CDCA7LQ96GN5 454 aa24.39■■□□□ 1.49
SF3A1-202ENST00000411423 H7C1W4 665 aa24.38■■□□□ 1.49
SF3A1-202ENST00000411423 CASP7P55210 303 aa24.38■■□□□ 1.49
SF3A1-202ENST00000411423 SLFN5Q08AF3 891 aa24.38■■□□□ 1.49
SF3A1-202ENST00000411423 NEXNQ0ZGT2 675 aa24.38■■□□□ 1.49
SF3A1-202ENST00000411423 JDP2Q8WYK2 163 aa24.38■■□□□ 1.49
SF3A1-202ENST00000411423 RPS8P62241 208 aaKnown RBP24.37■■□□□ 1.49
SF3A1-202ENST00000411423 GPSM2P81274 684 aa24.37■■□□□ 1.49
SF3A1-202ENST00000411423 HTRA3P83110 453 aa24.37■■□□□ 1.49
SF3A1-202ENST00000411423 GCKRQ14397 625 aa24.37■■□□□ 1.49
SF3A1-202ENST00000411423 SMC1BQ8NDV3 1235 aa24.37■■□□□ 1.49
SF3A1-202ENST00000411423 CTSWP56202 376 aa24.36■■□□□ 1.49
SF3A1-202ENST00000411423 UBE3BQ7Z3V4 1068 aa24.36■■□□□ 1.49
SF3A1-202ENST00000411423 TMC4Q7Z404 712 aa24.36■■□□□ 1.49
SF3A1-202ENST00000411423 TMX4Q9H1E5 349 aaPredicted RBP24.36■■□□□ 1.49
SF3A1-202ENST00000411423 TAF1DQ9H5J8 278 aaPredicted RBP24.36■■□□□ 1.49
SF3A1-202ENST00000411423 SCN4AP35499 1836 aa24.35■■□□□ 1.49
SF3A1-202ENST00000411423 KIAA2012Q0VF49 1180 aa24.35■■□□□ 1.49
SF3A1-202ENST00000411423 CCDC152Q4G0S7 254 aa24.35■■□□□ 1.49
SF3A1-202ENST00000411423 NIM1KQ8IY84 436 aa24.35■■□□□ 1.49
SF3A1-202ENST00000411423 GPC2Q8N158 579 aa24.35■■□□□ 1.49
SF3A1-202ENST00000411423 TTLL11Q8NHH1 800 aa24.35■■□□□ 1.49
SF3A1-202ENST00000411423 GPR101Q96P66 508 aaPredicted RBP24.35■■□□□ 1.49
SF3A1-202ENST00000411423 POLLQ9UGP5 575 aa24.35■■□□□ 1.49
SF3A1-202ENST00000411423 E9PSI1 815 aa24.34■■□□□ 1.49
SF3A1-202ENST00000411423 BEND3Q5T5X7 828 aa24.34■■□□□ 1.49
SF3A1-202ENST00000411423 MIER1Q8N108 512 aa24.34■■□□□ 1.49
SF3A1-202ENST00000411423 SUPT20HQ8NEM7 779 aa24.34■■□□□ 1.49
SF3A1-202ENST00000411423 LINS1Q8NG48 757 aa24.34■■□□□ 1.49
SF3A1-202ENST00000411423 VPS33BQ9H267 617 aa24.34■■□□□ 1.49
SF3A1-202ENST00000411423 NSFL1CQ9UNZ2 370 aaKnown RBP24.34■■□□□ 1.49
SF3A1-202ENST00000411423 GJA3Q9Y6H8 435 aa24.34■■□□□ 1.49
SF3A1-202ENST00000411423 EIF6P56537 245 aaKnown RBP24.33■■□□□ 1.49
SF3A1-202ENST00000411423 GREM2Q9H772 168 aa24.33■■□□□ 1.49
SF3A1-202ENST00000411423 MYH3P11055 1940 aa24.33■■□□□ 1.49
SF3A1-202ENST00000411423 ADAMTSL1Q8N6G6 1762 aa24.32■■□□□ 1.48
SF3A1-202ENST00000411423 YDJCA8MPS7 323 aa24.32■■□□□ 1.48
SF3A1-202ENST00000411423 SCNN1DP51172 638 aa24.32■■□□□ 1.48
SF3A1-202ENST00000411423 TRMT2AQ8IZ69 625 aaKnown RBP24.32■■□□□ 1.48
SF3A1-202ENST00000411423 IQCA1LA6NCM1 817 aa24.31■■□□□ 1.48
SF3A1-202ENST00000411423 HSP90B1P14625 803 aaKnown RBP24.31■■□□□ 1.48
SF3A1-202ENST00000411423 APLP1P51693 650 aa24.31■■□□□ 1.48
SF3A1-202ENST00000411423 CXCL9Q07325 125 aa24.31■■□□□ 1.48
SF3A1-202ENST00000411423 MRPL50Q8N5N7 158 aaKnown RBP24.31■■□□□ 1.48
SF3A1-202ENST00000411423 HACL1Q9UJ83 578 aa24.31■■□□□ 1.48
SF3A1-202ENST00000411423 TBC1D16Q8TBP0 767 aa24.3■■□□□ 1.48
SF3A1-202ENST00000411423 PLA2G12BQ9BX93 195 aa24.3■■□□□ 1.48
SF3A1-202ENST00000411423 ZNRF3Q9ULT6 936 aa24.3■■□□□ 1.48
SF3A1-202ENST00000411423 SPEF2Q9C093 1822 aa24.3■■□□□ 1.48
SF3A1-202ENST00000411423 WTIPA6NIX2 430 aaPredicted RBP24.29■■□□□ 1.48
SF3A1-202ENST00000411423 EPHX2P34913 555 aa24.29■■□□□ 1.48
SF3A1-202ENST00000411423 DIEXFQ68CQ4 756 aaKnown RBP24.29■■□□□ 1.48
SF3A1-202ENST00000411423 DNAJC5GQ8N7S2 189 aa24.29■■□□□ 1.48
SF3A1-202ENST00000411423 RTL9Q8NET4 1388 aa24.29■■□□□ 1.48
SF3A1-202ENST00000411423 RIMBP2O15034 1052 aa24.28■■□□□ 1.48
SF3A1-202ENST00000411423 EPS15P42566 896 aa24.28■■□□□ 1.48
SF3A1-202ENST00000411423 CHADLQ6NUI6 762 aa24.28■■□□□ 1.48
SF3A1-202ENST00000411423 ANKRD18AQ8IVF6 992 aa24.28■■□□□ 1.48
SF3A1-202ENST00000411423 SSH1Q8WYL5 1049 aa24.28■■□□□ 1.48
SF3A1-202ENST00000411423 PODXL2Q9NZ53 605 aa24.28■■□□□ 1.48
SF3A1-202ENST00000411423 C6orf229H3BNL8 230 aa24.27■■□□□ 1.48
SF3A1-202ENST00000411423 RAD17O75943 681 aa24.27■■□□□ 1.48
SF3A1-202ENST00000411423 CSF1RP07333 972 aa24.27■■□□□ 1.48
SF3A1-202ENST00000411423 WASHC4Q2M389 1173 aa24.27■■□□□ 1.48
SF3A1-202ENST00000411423 EAPPQ56P03 285 aaPredicted RBP24.27■■□□□ 1.48
SF3A1-202ENST00000411423 DBNDD1Q9H9R9 158 aa24.27■■□□□ 1.48
SF3A1-202ENST00000411423 FAM161AQ3B820 660 aa24.26■■□□□ 1.47
SF3A1-202ENST00000411423 EPHA10Q5JZY3 1008 aa24.26■■□□□ 1.47
SF3A1-202ENST00000411423 LDHDQ86WU2 507 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms