RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 PDIA4P13667 645 aaKnown RBP16.36■□□□□ 0.21
LIMS1-205ENST00000410093 FOXO4P98177 505 aa16.36■□□□□ 0.21
LIMS1-205ENST00000410093 TCIRG1Q13488 830 aa16.36■□□□□ 0.21
LIMS1-205ENST00000410093 TXNRD1Q16881 649 aa16.36■□□□□ 0.21
LIMS1-205ENST00000410093 TNNI3KQ59H18 835 aa16.36■□□□□ 0.21
LIMS1-205ENST00000410093 PLA2G12BQ9BX93 195 aa16.36■□□□□ 0.21
LIMS1-205ENST00000410093 FPGT-TNNI3KV9GXZ4 949 aa16.36■□□□□ 0.21
LIMS1-205ENST00000410093 ANKRD36CQ5JPF3 1778 aa16.36■□□□□ 0.21
LIMS1-205ENST00000410093 ATP5J2-PTCD1G3V325 749 aa16.35■□□□□ 0.21
LIMS1-205ENST00000410093 PTCD1O75127 700 aaKnown RBP16.35■□□□□ 0.21
LIMS1-205ENST00000410093 A1BGP04217 495 aa16.35■□□□□ 0.21
LIMS1-205ENST00000410093 RNF20Q5VTR2 975 aa16.35■□□□□ 0.21
LIMS1-205ENST00000410093 CWC27Q6UX04 472 aaKnown RBP16.35■□□□□ 0.21
LIMS1-205ENST00000410093 TMX3Q96JJ7 454 aa16.35■□□□□ 0.21
LIMS1-205ENST00000410093 RREB1Q92766 1687 aa16.35■□□□□ 0.21
LIMS1-205ENST00000410093 CICQ96RK0 1608 aaPredicted RBP16.35■□□□□ 0.21
LIMS1-205ENST00000410093 ZKSCAN1P17029 563 aaPredicted RBP16.35■□□□□ 0.21
LIMS1-205ENST00000410093 LMBR1LQ6UX01 489 aa16.35■□□□□ 0.21
LIMS1-205ENST00000410093 TTLL7Q6ZT98 887 aa16.35■□□□□ 0.21
LIMS1-205ENST00000410093 PIGBQ92521 554 aa16.35■□□□□ 0.21
LIMS1-205ENST00000410093 STK32BQ9NY57 414 aa16.35■□□□□ 0.21
LIMS1-205ENST00000410093 MAP4K4O95819 1239 aaPredicted RBP16.34■□□□□ 0.21
LIMS1-205ENST00000410093 PCCAP05165 728 aaPredicted RBP16.34■□□□□ 0.21
LIMS1-205ENST00000410093 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.34■□□□□ 0.21
LIMS1-205ENST00000410093 SIL1Q9H173 461 aa16.34■□□□□ 0.21
LIMS1-205ENST00000410093 PALD1Q9ULE6 856 aa16.34■□□□□ 0.21
LIMS1-205ENST00000410093 RGPD3A6NKT7 1758 aaPredicted RBP16.34■□□□□ 0.21
LIMS1-205ENST00000410093 RGPD4Q7Z3J3 1758 aa16.34■□□□□ 0.21
LIMS1-205ENST00000410093 CCDC171Q6TFL3 1326 aa16.33■□□□□ 0.2
LIMS1-205ENST00000410093 PSMA5P28066 241 aa16.33■□□□□ 0.2
LIMS1-205ENST00000410093 PRIM1P49642 420 aaKnown RBP16.33■□□□□ 0.2
LIMS1-205ENST00000410093 CCDC8Q9H0W5 538 aaPredicted RBP16.33■□□□□ 0.2
LIMS1-205ENST00000410093 HMG20BQ9P0W2 317 aa16.33■□□□□ 0.2
LIMS1-205ENST00000410093 SNX14Q9Y5W7 946 aa16.33■□□□□ 0.2
LIMS1-205ENST00000410093 NHSQ6T4R5 1651 aa16.32■□□□□ 0.2
LIMS1-205ENST00000410093 CDHR2Q9BYE9 1310 aa16.32■□□□□ 0.2
LIMS1-205ENST00000410093 LRRFIP1Q32MZ4 808 aaKnown RBP16.32■□□□□ 0.2
LIMS1-205ENST00000410093 PROM2Q8N271 834 aa16.32■□□□□ 0.2
LIMS1-205ENST00000410093 MAP4K1Q92918 833 aa16.32■□□□□ 0.2
LIMS1-205ENST00000410093 ZSCAN31Q96LW9 406 aaPredicted RBP16.32■□□□□ 0.2
LIMS1-205ENST00000410093 HAUS7Q99871 368 aa16.32■□□□□ 0.2
LIMS1-205ENST00000410093 FSD1Q9BTV5 496 aa16.32■□□□□ 0.2
LIMS1-205ENST00000410093 MAP3K15Q6ZN16 1313 aa16.32■□□□□ 0.2
LIMS1-205ENST00000410093 ERVV-1B6SEH8 477 aa16.31■□□□□ 0.2
LIMS1-205ENST00000410093 EYA2O00167 538 aa16.31■□□□□ 0.2
LIMS1-205ENST00000410093 BAG4O95429 457 aaKnown RBP16.31■□□□□ 0.2
LIMS1-205ENST00000410093 PIP4K2AP48426 406 aaPredicted RBP16.31■□□□□ 0.2
LIMS1-205ENST00000410093 TFCP2Q12800 502 aa16.31■□□□□ 0.2
LIMS1-205ENST00000410093 VPS53Q5VIR6 699 aa16.31■□□□□ 0.2
LIMS1-205ENST00000410093 GIGYF2Q6Y7W6 1299 aaKnown RBP16.31■□□□□ 0.2
LIMS1-205ENST00000410093 AKAP2Q9Y2D5 859 aa16.31■□□□□ 0.2
LIMS1-205ENST00000410093 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.31■□□□□ 0.2
LIMS1-205ENST00000410093 MED23Q9ULK4 1368 aa16.3■□□□□ 0.2
LIMS1-205ENST00000410093 NECTIN1Q15223 517 aa16.3■□□□□ 0.2
LIMS1-205ENST00000410093 TSGA10IPQ3SY00 556 aa16.3■□□□□ 0.2
LIMS1-205ENST00000410093 ZBTB38Q8NAP3 1195 aaPredicted RBP16.3■□□□□ 0.2
LIMS1-205ENST00000410093 AK7Q96M32 723 aa16.3■□□□□ 0.2
LIMS1-205ENST00000410093 TTC14Q96N46 770 aa16.3■□□□□ 0.2
LIMS1-205ENST00000410093 ALDH8A1Q9H2A2 487 aaPredicted RBP16.3■□□□□ 0.2
LIMS1-205ENST00000410093 ZBTB3Q9H5J0 574 aa16.3■□□□□ 0.2
LIMS1-205ENST00000410093 SPON1Q9HCB6 807 aa16.3■□□□□ 0.2
LIMS1-205ENST00000410093 SH2B1Q9NRF2 756 aaPredicted RBP16.3■□□□□ 0.2
LIMS1-205ENST00000410093 DBNLQ9UJU6 430 aaKnown RBP16.3■□□□□ 0.2
LIMS1-205ENST00000410093 ASAP1Q9ULH1 1129 aa16.3■□□□□ 0.2
LIMS1-205ENST00000410093 LIMCH1Q9UPQ0 1083 aa16.3■□□□□ 0.2
LIMS1-205ENST00000410093 MYH3P11055 1940 aa16.3■□□□□ 0.2
LIMS1-205ENST00000410093 ABCC12Q96J65 1359 aa16.3■□□□□ 0.2
LIMS1-205ENST00000410093 SSFA2P28290 1259 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 IL6STP40189 918 aaPredicted RBP16.29■□□□□ 0.2
LIMS1-205ENST00000410093 KRT32Q14532 448 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 ANKRD1Q15327 319 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 CCDC57Q2TAC2 916 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 DNAJC10Q8IXB1 793 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 IL25Q9H293 177 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 BOLA2Q9H3K6 86 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 ZSWIM6Q9HCJ5 1215 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 FOXD4L1Q9NU39 408 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 CYP46A1Q9Y6A2 500 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 DOT1LQ8TEK3 1739 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 LRP5O75197 1615 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 PALLDQ8WX93 1383 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 NMIQ13287 307 aaPredicted RBP16.29■□□□□ 0.2
LIMS1-205ENST00000410093 SLC15A2Q16348 729 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 SLC27A3Q5K4L6 730 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 KLHDC4Q8TBB5 520 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 ANO8Q9HCE9 1232 aaPredicted RBP16.29■□□□□ 0.2
LIMS1-205ENST00000410093 PPP1R1BQ9UD71 204 aaPredicted RBP16.29■□□□□ 0.2
LIMS1-205ENST00000410093 ZNF831Q5JPB2 1677 aa16.29■□□□□ 0.2
LIMS1-205ENST00000410093 NUP98P52948 1817 aa16.28■□□□□ 0.2
LIMS1-205ENST00000410093 GOLGA6L3A6NEY3 463 aa16.28■□□□□ 0.2
LIMS1-205ENST00000410093 CSF1RP07333 972 aa16.28■□□□□ 0.2
LIMS1-205ENST00000410093 CYP19A1P11511 503 aaPredicted RBP16.28■□□□□ 0.2
LIMS1-205ENST00000410093 HSP90B1P14625 803 aaKnown RBP16.28■□□□□ 0.2
LIMS1-205ENST00000410093 HMGB2P26583 209 aaKnown RBP16.28■□□□□ 0.2
LIMS1-205ENST00000410093 KLHL40Q2TBA0 621 aa16.28■□□□□ 0.2
LIMS1-205ENST00000410093 ATG9AQ7Z3C6 839 aa16.28■□□□□ 0.2
LIMS1-205ENST00000410093 TLR7Q9NYK1 1049 aaKnown RBP16.28■□□□□ 0.2
LIMS1-205ENST00000410093 CHMP3Q9Y3E7 222 aa16.28■□□□□ 0.2
LIMS1-205ENST00000410093 ZNF609O15014 1411 aa16.27■□□□□ 0.2
LIMS1-205ENST00000410093 KCNJ4P48050 445 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms